Wall clock time and date at job start Mon Mar 30 2020 07:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47066 * 2 1 4 4 C 1.53001 * 109.47256 * 119.99896 * 2 1 3 5 5 C 1.53000 * 109.47120 * 175.00086 * 4 2 1 6 6 C 1.52993 * 109.46907 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47424 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99651 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00392 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99894 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.01868 * 325.70649 * 10 9 7 12 12 C 1.53873 * 110.03147 * 87.09634 * 10 9 7 13 13 C 1.54269 * 106.59646 * 119.33268 * 12 10 9 14 14 C 1.54882 * 104.19831 * 23.61137 * 13 12 10 15 15 H 1.08994 * 110.75597 * 80.55637 * 14 13 12 16 16 C 1.50702 * 110.75854 * 203.74430 * 14 13 12 17 17 H 1.08003 * 120.00527 * 118.54176 * 16 14 13 18 18 C 1.37878 * 119.99656 * 298.54724 * 16 14 13 19 19 N 1.31514 * 120.00160 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99758 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47200 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46832 * 119.99800 * 20 18 16 23 23 H 1.48498 * 109.47104 * 239.99860 * 20 18 16 24 24 C 1.54273 * 110.07287 * 204.28551 * 10 9 7 25 25 H 1.08991 * 109.47391 * 300.00011 * 1 2 3 26 26 H 1.09006 * 109.47324 * 60.00158 * 1 2 3 27 27 H 1.09007 * 109.46803 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47381 * 240.00188 * 2 1 3 29 29 H 1.09000 * 109.46867 * 59.99873 * 3 2 1 30 30 H 1.08991 * 109.47059 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.46920 * 300.00090 * 3 2 1 32 32 H 1.09000 * 109.46933 * 55.00042 * 4 2 1 33 33 H 1.09000 * 109.47168 * 295.00687 * 4 2 1 34 34 H 1.09003 * 109.46771 * 59.99966 * 5 4 2 35 35 H 1.09003 * 109.47251 * 299.99956 * 5 4 2 36 36 H 1.09003 * 109.47345 * 60.00425 * 6 5 4 37 37 H 1.08997 * 109.47838 * 300.00390 * 6 5 4 38 38 H 0.97002 * 120.00266 * 0.02562 * 9 7 6 39 39 H 1.08996 * 110.03511 * 238.61506 * 12 10 9 40 40 H 1.09002 * 110.03221 * 0.02562 * 12 10 9 41 41 H 1.09000 * 110.48429 * 142.29450 * 13 12 10 42 42 H 1.08998 * 110.48673 * 264.79629 * 13 12 10 43 43 H 0.97004 * 120.00181 * 179.97438 * 19 18 16 44 44 H 1.09001 * 110.48533 * 335.76640 * 24 10 9 45 45 H 1.08999 * 110.48202 * 98.40568 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 6 4.0749 -1.5516 2.4375 7 6 5.5767 -1.6603 2.3769 8 8 6.1798 -1.2057 1.4279 9 7 6.2498 -2.2618 3.3777 10 6 7.7098 -2.3670 3.3190 11 1 8.0332 -2.4992 2.2865 12 6 8.3537 -1.1029 3.9151 13 6 9.2029 -1.5659 5.1170 14 6 9.5116 -3.0530 4.8136 15 1 10.3387 -3.1399 4.1092 16 6 9.8132 -3.8058 6.0839 17 1 9.1856 -4.6319 6.3841 18 6 10.8903 -3.4399 6.8628 19 7 11.6549 -2.4342 6.4971 20 14 11.2638 -4.3725 8.4377 21 1 10.2618 -5.4527 8.6228 22 1 12.6217 -4.9674 8.3505 23 1 11.2053 -3.4393 9.5914 24 6 8.1902 -3.5539 4.1794 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9994 0.1676 1.1420 35 1 3.8532 -1.3939 0.3002 36 1 3.6403 -2.5502 2.4838 37 1 3.7865 -0.9884 3.3250 38 1 5.7675 -2.6251 4.1369 39 1 8.9895 -0.6218 3.1720 40 1 7.5798 -0.4115 4.2486 41 1 10.1258 -0.9891 5.1767 42 1 8.6357 -1.4731 6.0432 43 1 12.4125 -2.1765 7.0453 44 1 7.4586 -3.7845 4.9538 45 1 8.3742 -4.4280 3.5548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452556915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:36 Heat of formation + Delta-G solvation = -89.248876 kcal Electronic energy + Delta-G solvation = -20210.013464 eV Core-core repulsion = 17225.272757 eV Total energy + Delta-G solvation = -2984.740707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.64530 -37.46643 -36.79775 -33.61294 -32.89920 -31.86983 -28.24828 -27.90816 -27.39461 -26.38248 -23.87910 -22.36160 -20.29083 -20.16291 -19.53817 -19.01427 -16.74838 -16.56210 -15.97421 -15.42118 -15.03433 -14.65242 -14.42773 -14.22624 -13.98742 -13.40749 -13.32218 -12.63781 -12.48782 -12.32626 -12.25638 -11.92870 -11.78061 -11.73096 -11.17304 -11.09978 -10.98179 -10.93274 -10.84886 -10.78806 -10.57846 -10.55035 -10.30045 -9.94221 -9.52443 -9.47819 -9.19365 -8.80103 -8.55863 -8.37499 -6.01367 -4.04981 2.91517 3.28518 3.36873 3.39822 3.53157 4.42885 4.53387 4.64588 4.67723 4.91819 5.01555 5.13037 5.30741 5.35474 5.37404 5.42627 5.49734 5.55892 5.61094 5.64197 5.68441 5.70734 5.74785 5.84952 5.94907 5.97386 6.04029 6.22402 6.29449 6.33923 6.38644 6.61209 6.67965 6.75951 6.91648 6.96075 7.27457 7.34354 7.72119 7.85970 7.89574 8.02521 8.42148 8.54793 8.97418 9.59281 11.07750 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.050465 B = 0.002806 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.706500 B = 9977.007411 C =10171.288632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.142 4.142 7 C 0.506 3.494 8 O -0.549 6.549 9 N -0.720 5.720 10 C 0.137 3.863 11 H 0.078 0.922 12 C -0.134 4.134 13 C -0.100 4.100 14 C 0.051 3.949 15 H 0.032 0.968 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.121 4.121 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.397 0.603 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.259 0.741 44 H 0.060 0.940 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.506 3.749 -8.776 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.153 4.153 5 C -0.143 4.143 6 C -0.182 4.182 7 C 0.292 3.708 8 O -0.427 6.427 9 N -0.371 5.371 10 C 0.033 3.967 11 H 0.096 0.904 12 C -0.173 4.173 13 C -0.138 4.138 14 C 0.032 3.968 15 H 0.050 0.950 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.159 4.159 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.231 0.769 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.902 4.174 -9.406 21.521 hybrid contribution 0.057 -0.602 1.364 1.492 sum -18.845 3.572 -8.042 20.798 Atomic orbital electron populations 1.21848 0.95464 1.01549 1.01603 1.21116 0.95387 0.96577 0.98572 1.21908 1.01667 0.95811 1.01423 1.21681 0.95447 1.00365 0.97800 1.21388 0.94442 1.01483 0.96954 1.21705 0.92613 1.02911 1.00976 1.20703 0.89929 0.77732 0.82446 1.90674 1.70553 1.47801 1.33629 1.46391 1.08560 1.59083 1.23022 1.21851 0.77625 0.96873 1.00333 0.90361 1.22645 0.98973 0.96185 0.99480 1.22302 0.98027 0.99459 0.94035 1.19551 0.90416 0.91598 0.95217 0.95000 1.21135 1.11881 1.15628 1.06557 0.92610 1.24987 0.96060 0.95084 0.97844 1.69973 1.17128 1.27269 1.38293 0.86582 0.78176 0.79892 0.83598 1.19838 1.21077 1.21100 1.22753 1.00600 0.95130 0.97417 0.92778 0.92886 0.92814 0.91219 0.92815 0.92059 0.93023 0.92020 0.91962 0.90986 0.91349 0.89272 0.89207 0.76903 0.92684 0.93303 0.91272 0.93542 0.93112 0.92099 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.19 37.16 0.34 -0.64 16 2 C -0.10 -0.76 2.92 -90.62 -0.26 -1.03 16 3 C -0.15 -1.20 8.95 37.16 0.33 -0.87 16 4 C -0.12 -0.92 4.68 -26.73 -0.13 -1.05 16 5 C -0.10 -1.08 4.26 -26.73 -0.11 -1.19 16 6 C -0.14 -1.47 5.70 -27.89 -0.16 -1.62 16 7 C 0.51 7.58 7.82 -10.99 -0.09 7.49 16 8 O -0.55 -10.41 15.65 5.56 0.09 -10.32 16 9 N -0.72 -10.83 4.99 -52.72 -0.26 -11.09 16 10 C 0.14 2.52 3.23 -66.81 -0.22 2.30 16 11 H 0.08 1.53 7.59 -51.93 -0.39 1.14 16 12 C -0.13 -2.66 6.59 -25.61 -0.17 -2.83 16 13 C -0.10 -2.32 5.56 -25.07 -0.14 -2.45 16 14 C 0.05 1.24 2.82 -89.78 -0.25 0.99 16 15 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.51 -13.78 8.54 -34.44 -0.29 -14.08 16 17 H 0.06 1.47 7.78 -52.48 -0.41 1.06 16 18 C 0.06 1.70 5.33 -17.82 -0.10 1.60 16 19 N -0.89 -25.33 12.02 55.43 0.67 -24.66 16 20 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.12 -2.39 5.94 -25.07 -0.15 -2.54 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.83 6.52 -51.93 -0.34 0.49 16 35 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 4.95 8.35 -40.82 -0.34 4.61 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.92 7.92 -51.93 -0.41 0.51 16 41 H 0.07 1.76 7.37 -51.93 -0.38 1.38 16 42 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -29.96 355.10 -9.05 -39.01 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.48 Total: 1.65 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -1.39 Total: -15.93 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.40 Total: -35.75 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.96 -9.05 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452556915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.235 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds