Wall clock time and date at job start Mon Mar 30 2020 07:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47066 * 2 1 4 4 C 1.53001 * 109.47256 * 119.99896 * 2 1 3 5 5 C 1.53000 * 109.47120 * 175.00086 * 4 2 1 6 6 C 1.52993 * 109.46907 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47424 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99651 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00392 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99894 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.01868 * 325.70649 * 10 9 7 12 12 C 1.53873 * 110.03147 * 87.09634 * 10 9 7 13 13 C 1.54269 * 106.59646 * 119.33268 * 12 10 9 14 14 C 1.54882 * 104.19831 * 23.61137 * 13 12 10 15 15 H 1.08994 * 110.75597 * 80.55637 * 14 13 12 16 16 C 1.50702 * 110.75854 * 203.74430 * 14 13 12 17 17 H 1.08003 * 120.00527 * 118.54176 * 16 14 13 18 18 C 1.37878 * 119.99656 * 298.54724 * 16 14 13 19 19 N 1.31514 * 120.00160 * 359.97438 * 18 16 14 20 20 Si 1.86805 * 119.99758 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47200 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46832 * 119.99800 * 20 18 16 23 23 H 1.48498 * 109.47104 * 239.99860 * 20 18 16 24 24 C 1.54273 * 110.07287 * 204.28551 * 10 9 7 25 25 H 1.08991 * 109.47391 * 300.00011 * 1 2 3 26 26 H 1.09006 * 109.47324 * 60.00158 * 1 2 3 27 27 H 1.09007 * 109.46803 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47381 * 240.00188 * 2 1 3 29 29 H 1.09000 * 109.46867 * 59.99873 * 3 2 1 30 30 H 1.08991 * 109.47059 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.46920 * 300.00090 * 3 2 1 32 32 H 1.09000 * 109.46933 * 55.00042 * 4 2 1 33 33 H 1.09000 * 109.47168 * 295.00687 * 4 2 1 34 34 H 1.09003 * 109.46771 * 59.99966 * 5 4 2 35 35 H 1.09003 * 109.47251 * 299.99956 * 5 4 2 36 36 H 1.09003 * 109.47345 * 60.00425 * 6 5 4 37 37 H 1.08997 * 109.47838 * 300.00390 * 6 5 4 38 38 H 0.97002 * 120.00266 * 0.02562 * 9 7 6 39 39 H 1.08996 * 110.03511 * 238.61506 * 12 10 9 40 40 H 1.09002 * 110.03221 * 0.02562 * 12 10 9 41 41 H 1.09000 * 110.48429 * 142.29450 * 13 12 10 42 42 H 1.08998 * 110.48673 * 264.79629 * 13 12 10 43 43 H 0.97004 * 120.00181 * 179.97438 * 19 18 16 44 44 H 1.09001 * 110.48533 * 335.76640 * 24 10 9 45 45 H 1.08999 * 110.48202 * 98.40568 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 6 4.0749 -1.5516 2.4375 7 6 5.5767 -1.6603 2.3769 8 8 6.1798 -1.2057 1.4279 9 7 6.2498 -2.2618 3.3777 10 6 7.7098 -2.3670 3.3190 11 1 8.0332 -2.4992 2.2865 12 6 8.3537 -1.1029 3.9151 13 6 9.2029 -1.5659 5.1170 14 6 9.5116 -3.0530 4.8136 15 1 10.3387 -3.1399 4.1092 16 6 9.8132 -3.8058 6.0839 17 1 9.1856 -4.6319 6.3841 18 6 10.8903 -3.4399 6.8628 19 7 11.6549 -2.4342 6.4971 20 14 11.2638 -4.3725 8.4377 21 1 10.2618 -5.4527 8.6228 22 1 12.6217 -4.9674 8.3505 23 1 11.2053 -3.4393 9.5914 24 6 8.1902 -3.5539 4.1794 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9994 0.1676 1.1420 35 1 3.8532 -1.3939 0.3002 36 1 3.6403 -2.5502 2.4838 37 1 3.7865 -0.9884 3.3250 38 1 5.7675 -2.6251 4.1369 39 1 8.9895 -0.6218 3.1720 40 1 7.5798 -0.4115 4.2486 41 1 10.1258 -0.9891 5.1767 42 1 8.6357 -1.4731 6.0432 43 1 12.4125 -2.1765 7.0453 44 1 7.4586 -3.7845 4.9538 45 1 8.3742 -4.4280 3.5548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452556915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:36 Heat of formation + Delta-G solvation = -105.499197 kcal Electronic energy + Delta-G solvation = -20210.718131 eV Core-core repulsion = 17225.272757 eV Total energy + Delta-G solvation = -2985.445374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.92971 -38.81777 -37.75097 -35.26776 -33.97566 -33.42861 -30.01564 -29.21378 -27.99434 -27.62241 -25.74134 -23.29349 -21.62762 -21.06286 -20.85998 -20.64817 -18.48174 -17.91570 -17.00807 -16.74218 -16.57486 -16.11223 -15.70245 -15.27099 -14.88418 -14.63079 -14.31263 -14.14492 -13.96594 -13.63292 -13.07893 -13.03372 -13.00556 -12.82446 -12.59872 -12.50433 -12.45379 -12.35587 -12.10675 -11.84862 -11.67512 -11.51212 -11.41442 -11.39049 -11.27419 -11.09918 -10.80867 -10.68690 -10.46885 -9.94717 -8.09928 -6.20580 1.42106 1.44288 1.55221 1.74251 2.33132 2.45936 3.20920 3.77345 3.87476 3.97392 4.00678 4.04054 4.16962 4.20080 4.29386 4.42844 4.66171 4.71074 4.74468 4.79127 4.80369 4.86957 4.91614 4.93718 5.02241 5.03483 5.06130 5.07143 5.13668 5.15773 5.26910 5.30286 5.35117 5.41548 5.43522 5.56897 5.59470 5.66519 5.71028 5.93469 5.99550 6.37090 6.69701 6.90570 7.38010 7.47488 8.98769 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.050465 B = 0.002806 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.706500 B = 9977.007411 C =10171.288632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.151 4.151 4 C -0.108 4.108 5 C -0.102 4.102 6 C -0.131 4.131 7 C 0.502 3.498 8 O -0.593 6.593 9 N -0.712 5.712 10 C 0.149 3.851 11 H 0.066 0.934 12 C -0.124 4.124 13 C -0.089 4.089 14 C 0.039 3.961 15 H -0.002 1.002 16 C -0.527 4.527 17 H 0.060 0.940 18 C 0.009 3.991 19 N -0.922 5.922 20 Si 0.955 3.045 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.282 1.282 24 C -0.106 4.106 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.413 0.587 39 H 0.046 0.954 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.259 0.741 44 H 0.076 0.924 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.173 2.901 -7.920 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.208 4.208 4 C -0.145 4.145 5 C -0.140 4.140 6 C -0.171 4.171 7 C 0.291 3.709 8 O -0.474 6.474 9 N -0.363 5.363 10 C 0.044 3.956 11 H 0.084 0.916 12 C -0.163 4.163 13 C -0.128 4.128 14 C 0.020 3.980 15 H 0.016 0.984 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.190 4.190 19 N -0.561 5.561 20 Si 0.781 3.219 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.208 1.208 24 C -0.144 4.144 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.250 0.750 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.607 3.308 -8.535 23.466 hybrid contribution 0.920 -0.317 1.051 1.432 sum -20.687 2.991 -7.484 22.202 Atomic orbital electron populations 1.21817 0.94329 1.02050 1.01967 1.21136 0.96310 0.96158 0.98312 1.21905 1.00687 0.96332 1.01889 1.21629 0.93452 1.01275 0.98181 1.21346 0.96118 1.00171 0.96404 1.21746 0.88586 1.04941 1.01823 1.21571 0.91819 0.76273 0.81268 1.90666 1.71862 1.49535 1.35318 1.46219 1.06962 1.59237 1.23922 1.21431 0.79874 0.95273 0.99028 0.91621 1.22520 0.98743 0.97173 0.97820 1.22072 0.97031 0.98513 0.95137 1.19541 0.91742 0.92536 0.94180 0.98415 1.21516 1.11931 1.15761 1.07302 0.92178 1.25808 0.96081 0.95956 1.01130 1.70115 1.17632 1.28764 1.39589 0.85547 0.77969 0.78778 0.79598 1.18643 1.21083 1.20830 1.22555 0.98407 0.95695 0.97774 0.92328 0.92658 0.92239 0.91990 0.92335 0.93564 0.92609 0.90746 0.90994 0.92807 0.93059 0.86433 0.86740 0.74971 0.93474 0.91927 0.94473 0.94197 0.93212 0.90550 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.10 -1.41 2.92 -10.79 -0.03 -1.44 16 3 C -0.15 -2.27 8.95 71.98 0.64 -1.62 16 4 C -0.11 -1.45 4.68 30.59 0.14 -1.31 16 5 C -0.10 -1.94 4.26 30.59 0.13 -1.81 16 6 C -0.13 -2.30 5.70 29.85 0.17 -2.13 16 7 C 0.50 14.11 7.82 87.66 0.69 14.79 16 8 O -0.59 -22.27 15.65 -3.03 -0.05 -22.32 16 9 N -0.71 -19.77 4.99 -439.09 -2.19 -21.96 16 10 C 0.15 5.35 3.23 45.72 0.15 5.50 16 11 H 0.07 2.56 7.59 -2.39 -0.02 2.55 16 12 C -0.12 -4.90 6.59 31.32 0.21 -4.69 16 13 C -0.09 -4.21 5.56 31.67 0.18 -4.03 16 14 C 0.04 1.92 2.82 -10.25 -0.03 1.89 16 15 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 16 C -0.53 -28.29 8.54 25.60 0.22 -28.07 16 17 H 0.06 3.10 7.78 -2.91 -0.02 3.08 16 18 C 0.01 0.48 5.33 84.65 0.45 0.93 16 19 N -0.92 -53.75 12.02 21.45 0.26 -53.49 16 20 Si 0.96 43.03 29.54 68.60 2.03 45.05 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 24 C -0.11 -4.09 5.94 31.67 0.19 -3.91 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.82 6.56 -2.39 -0.02 0.81 16 31 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 1.22 6.52 -2.39 -0.02 1.20 16 35 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 36 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.41 8.89 8.35 -92.71 -0.77 8.12 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 2.29 7.92 -2.39 -0.02 2.27 16 41 H 0.04 1.96 7.37 -2.39 -0.02 1.94 16 42 H 0.04 1.89 8.04 -2.39 -0.02 1.88 16 43 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.08 2.70 7.63 -2.39 -0.02 2.69 16 45 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -65.89 355.10 3.97 -61.92 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.16 Total: 17.64 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 3.76 Total: -26.84 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -1.93 Total: -75.46 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -65.89 3.97 -61.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452556915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.577 kcal (2) G-P(sol) polarization free energy of solvation -65.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds