Wall clock time and date at job start Mon Mar 30 2020 07:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47197 * 2 1 4 4 C 1.53003 * 109.47045 * 120.00311 * 2 1 3 5 5 C 1.53002 * 109.46869 * 299.99253 * 4 2 1 6 6 C 1.53004 * 109.47045 * 179.97438 * 4 2 1 7 7 C 1.50694 * 109.47539 * 59.99697 * 4 2 1 8 8 O 1.21285 * 120.00099 * 359.97438 * 7 4 2 9 9 N 1.34772 * 120.00133 * 180.02562 * 7 4 2 10 10 C 1.46506 * 120.00070 * 179.97438 * 9 7 4 11 11 H 1.08993 * 110.01627 * 326.39144 * 10 9 7 12 12 C 1.53877 * 110.02810 * 87.83732 * 10 9 7 13 13 C 1.54263 * 106.60015 * 119.28538 * 12 10 9 14 14 C 1.54892 * 104.19410 * 23.60484 * 13 12 10 15 15 H 1.09000 * 110.91517 * 80.45207 * 14 13 12 16 16 C 1.50706 * 110.75421 * 203.74160 * 14 13 12 17 17 H 1.08005 * 119.99758 * 113.33233 * 16 14 13 18 18 C 1.37871 * 120.00102 * 293.33118 * 16 14 13 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 C 1.54270 * 110.03126 * 205.00183 * 10 9 7 25 25 H 1.09003 * 109.46988 * 299.99947 * 1 2 3 26 26 H 1.08995 * 109.47026 * 60.00275 * 1 2 3 27 27 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46483 * 239.99520 * 2 1 3 29 29 H 1.09002 * 109.46901 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46831 * 299.99770 * 3 2 1 31 31 H 1.08994 * 109.47689 * 59.99966 * 3 2 1 32 32 H 1.08995 * 109.47357 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47358 * 300.00565 * 5 4 2 34 34 H 1.09002 * 109.47015 * 60.00365 * 5 4 2 35 35 H 1.08999 * 109.46548 * 299.99532 * 6 4 2 36 36 H 1.09002 * 109.47191 * 59.99430 * 6 4 2 37 37 H 1.08995 * 109.47026 * 179.97438 * 6 4 2 38 38 H 0.97004 * 119.99911 * 0.02562 * 9 7 4 39 39 H 1.09002 * 110.02743 * 238.56791 * 12 10 9 40 40 H 1.08994 * 110.03285 * 359.97438 * 12 10 9 41 41 H 1.09000 * 110.48823 * 264.93184 * 13 12 10 42 42 H 1.09002 * 110.48773 * 142.28431 * 13 12 10 43 43 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 44 44 H 1.08992 * 110.48675 * 98.42870 * 24 10 9 45 45 H 1.09005 * 110.59729 * 335.83812 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 0.0000 2.4985 6 6 3.5701 -0.7219 1.2489 7 6 1.5377 -2.1421 1.2493 8 8 0.8400 -2.5387 0.3399 9 7 1.8629 -2.9718 2.2603 10 6 1.3740 -4.3529 2.2606 11 1 0.3848 -4.3986 1.8053 12 6 2.3520 -5.2582 1.4914 13 6 2.8546 -6.3168 2.4947 14 6 1.7442 -6.3756 3.5729 15 1 0.9087 -6.9903 3.2379 16 6 2.2939 -6.8909 4.8781 17 1 2.3441 -6.2391 5.7379 18 6 2.7328 -8.1943 4.9747 19 7 2.6722 -8.9879 3.9277 20 14 3.4148 -8.8327 6.5923 21 1 3.8145 -10.2542 6.4344 22 1 4.5985 -8.0257 6.9834 23 1 2.3731 -8.7260 7.6453 24 6 1.3166 -4.8928 3.7046 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6768 1.9563 0.8899 32 1 1.8938 -0.5135 3.3885 33 1 1.8935 1.0277 2.4984 34 1 0.4401 0.0001 2.4985 35 1 3.9329 -1.2360 0.3589 36 1 3.9338 0.3057 1.2486 37 1 3.9334 -1.2354 2.1391 38 1 2.4200 -2.6543 2.9882 39 1 1.8374 -5.7442 0.6624 40 1 3.1899 -4.6700 1.1175 41 1 3.8002 -6.0039 2.9376 42 1 2.9632 -7.2848 2.0056 43 1 2.3184 -8.6562 3.0876 44 1 0.3028 -4.8216 4.0985 45 1 2.0125 -4.3505 4.3448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452558864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:41 Heat of formation + Delta-G solvation = -75.797512 kcal Electronic energy + Delta-G solvation = -21515.211270 eV Core-core repulsion = 18531.053858 eV Total energy + Delta-G solvation = -2984.157412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.46779 -37.86255 -36.38650 -34.01651 -32.31707 -31.00418 -28.20863 -28.03956 -27.00107 -26.68277 -24.04564 -23.59775 -21.26312 -20.01149 -19.27067 -18.54166 -16.93772 -16.70489 -16.02157 -15.33660 -14.68875 -14.51499 -14.39399 -14.11780 -13.74404 -13.29598 -12.99113 -12.85739 -12.54628 -12.33522 -12.20800 -12.07564 -11.97412 -11.77045 -11.44872 -11.28549 -10.97933 -10.92658 -10.72283 -10.65093 -10.59625 -10.50148 -10.12484 -10.06495 -9.78449 -9.47964 -9.24276 -8.64800 -8.45906 -8.33543 -6.32726 -4.05205 2.84413 3.42191 3.43948 3.44382 3.63295 4.45627 4.53294 4.63918 4.68152 5.04219 5.12363 5.17782 5.33403 5.34757 5.42791 5.43509 5.55761 5.57799 5.62690 5.66140 5.68251 5.75548 5.80019 5.81253 5.89407 6.04661 6.11768 6.18807 6.22293 6.33687 6.42891 6.46716 6.54951 6.59578 6.72488 6.80320 7.01030 7.13214 7.32837 7.64245 7.80091 8.23917 8.43881 8.48630 8.89205 9.66965 11.05386 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039578 B = 0.003918 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.288548 B = 7145.335781 C = 7347.222550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.069 4.069 3 C -0.151 4.151 4 C -0.079 4.079 5 C -0.144 4.144 6 C -0.143 4.143 7 C 0.519 3.481 8 O -0.541 6.541 9 N -0.716 5.716 10 C 0.138 3.862 11 H 0.080 0.920 12 C -0.131 4.131 13 C -0.115 4.115 14 C 0.035 3.965 15 H 0.026 0.974 16 C -0.594 4.594 17 H 0.048 0.952 18 C 0.020 3.980 19 N -0.912 5.912 20 Si 1.066 2.934 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.289 1.289 24 C -0.113 4.113 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.396 0.604 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.272 0.728 44 H 0.053 0.947 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 19.194 -4.652 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.088 4.088 3 C -0.208 4.208 4 C -0.082 4.082 5 C -0.202 4.202 6 C -0.201 4.201 7 C 0.305 3.695 8 O -0.419 6.419 9 N -0.366 5.366 10 C 0.034 3.966 11 H 0.098 0.902 12 C -0.170 4.170 13 C -0.154 4.154 14 C 0.017 3.983 15 H 0.044 0.956 16 C -0.633 4.633 17 H 0.066 0.934 18 C -0.185 4.185 19 N -0.549 5.549 20 Si 0.895 3.105 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.215 1.215 24 C -0.151 4.151 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.231 0.769 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.214 17.542 -4.570 18.129 hybrid contribution -0.305 1.531 -0.409 1.614 sum -0.091 19.073 -4.978 19.712 Atomic orbital electron populations 1.22131 0.94815 1.04182 1.00648 1.20863 0.96530 0.95076 0.96330 1.21987 1.00998 0.96007 1.01788 1.20823 0.96938 0.92576 0.97867 1.21965 1.01915 1.00659 0.95632 1.21920 0.92770 1.02750 1.02612 1.20498 0.79981 0.87116 0.81909 1.90604 1.38146 1.77286 1.35878 1.46343 1.52978 1.12599 1.24712 1.21829 0.97566 0.79180 0.98056 0.90167 1.22585 0.98114 0.97778 0.98537 1.22565 1.00151 0.96444 0.96196 1.19707 0.93556 0.90119 0.94958 0.95635 1.21912 1.45907 0.99188 0.96243 0.93353 1.25767 0.95349 0.93589 1.03773 1.70793 1.42968 1.38621 1.02481 0.83585 0.76255 0.76253 0.74443 1.20841 1.21544 1.21529 1.22621 1.00330 0.99495 0.92657 0.93279 0.93353 0.89781 0.90805 0.92481 0.92708 0.92403 0.92188 0.91287 0.91761 0.92112 0.91243 0.92044 0.76922 0.92526 0.92929 0.92721 0.92615 0.91590 0.92787 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.52 37.16 0.32 -1.54 16 2 C -0.07 -0.75 1.92 -90.62 -0.17 -0.92 16 3 C -0.15 -1.24 8.49 37.16 0.32 -0.93 16 4 C -0.08 -0.87 0.43 -155.66 -0.07 -0.93 16 5 C -0.14 -1.34 7.67 37.16 0.28 -1.06 16 6 C -0.14 -1.37 8.02 37.16 0.30 -1.07 16 7 C 0.52 7.70 6.18 -10.99 -0.07 7.63 16 8 O -0.54 -9.86 13.31 5.55 0.07 -9.79 16 9 N -0.72 -10.67 4.77 -52.72 -0.25 -10.92 16 10 C 0.14 2.48 3.25 -66.81 -0.22 2.26 16 11 H 0.08 1.54 7.56 -51.93 -0.39 1.14 16 12 C -0.13 -2.53 6.59 -25.61 -0.17 -2.70 16 13 C -0.12 -2.60 5.69 -25.07 -0.14 -2.74 16 14 C 0.04 0.86 2.37 -89.78 -0.21 0.65 16 15 H 0.03 0.67 7.91 -51.93 -0.41 0.26 16 16 C -0.59 -16.18 8.49 -34.44 -0.29 -16.47 16 17 H 0.05 1.30 7.77 -52.48 -0.41 0.89 16 18 C 0.02 0.55 5.36 -17.82 -0.10 0.46 16 19 N -0.91 -27.07 13.49 55.43 0.75 -26.32 16 20 Si 1.07 24.74 29.90 -169.99 -5.08 19.65 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.11 -2.24 5.94 -25.07 -0.15 -2.39 16 25 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.22 5.51 -51.93 -0.29 0.94 16 28 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 29 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 32 H 0.06 0.53 7.56 -51.93 -0.39 0.14 16 33 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 34 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.54 6.43 -51.93 -0.33 0.20 16 37 H 0.06 0.57 7.57 -51.93 -0.39 0.17 16 38 H 0.40 5.11 7.20 -40.82 -0.29 4.82 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 41 H 0.05 1.27 8.04 -51.93 -0.42 0.85 16 42 H 0.06 1.34 6.66 -51.93 -0.35 1.00 16 43 H 0.27 7.99 5.56 -40.82 -0.23 7.77 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.19 7.63 -51.93 -0.40 0.79 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -30.33 335.98 -7.53 -37.86 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.71 Total: 4.20 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -0.37 Total: -19.75 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.50 Total: -37.24 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.07 Total: -9.79 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.33 -7.53 -37.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452558864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.934 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds