Wall clock time and date at job start Mon Mar 30 2020 07:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47197 * 2 1 4 4 C 1.53003 * 109.47045 * 120.00311 * 2 1 3 5 5 C 1.53002 * 109.46869 * 299.99253 * 4 2 1 6 6 C 1.53004 * 109.47045 * 179.97438 * 4 2 1 7 7 C 1.50694 * 109.47539 * 59.99697 * 4 2 1 8 8 O 1.21285 * 120.00099 * 359.97438 * 7 4 2 9 9 N 1.34772 * 120.00133 * 180.02562 * 7 4 2 10 10 C 1.46506 * 120.00070 * 179.97438 * 9 7 4 11 11 H 1.08993 * 110.01627 * 326.39144 * 10 9 7 12 12 C 1.53877 * 110.02810 * 87.83732 * 10 9 7 13 13 C 1.54263 * 106.60015 * 119.28538 * 12 10 9 14 14 C 1.54892 * 104.19410 * 23.60484 * 13 12 10 15 15 H 1.09000 * 110.91517 * 80.45207 * 14 13 12 16 16 C 1.50706 * 110.75421 * 203.74160 * 14 13 12 17 17 H 1.08005 * 119.99758 * 113.33233 * 16 14 13 18 18 C 1.37871 * 120.00102 * 293.33118 * 16 14 13 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 C 1.54270 * 110.03126 * 205.00183 * 10 9 7 25 25 H 1.09003 * 109.46988 * 299.99947 * 1 2 3 26 26 H 1.08995 * 109.47026 * 60.00275 * 1 2 3 27 27 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46483 * 239.99520 * 2 1 3 29 29 H 1.09002 * 109.46901 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46831 * 299.99770 * 3 2 1 31 31 H 1.08994 * 109.47689 * 59.99966 * 3 2 1 32 32 H 1.08995 * 109.47357 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47358 * 300.00565 * 5 4 2 34 34 H 1.09002 * 109.47015 * 60.00365 * 5 4 2 35 35 H 1.08999 * 109.46548 * 299.99532 * 6 4 2 36 36 H 1.09002 * 109.47191 * 59.99430 * 6 4 2 37 37 H 1.08995 * 109.47026 * 179.97438 * 6 4 2 38 38 H 0.97004 * 119.99911 * 0.02562 * 9 7 4 39 39 H 1.09002 * 110.02743 * 238.56791 * 12 10 9 40 40 H 1.08994 * 110.03285 * 359.97438 * 12 10 9 41 41 H 1.09000 * 110.48823 * 264.93184 * 13 12 10 42 42 H 1.09002 * 110.48773 * 142.28431 * 13 12 10 43 43 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 44 44 H 1.08992 * 110.48675 * 98.42870 * 24 10 9 45 45 H 1.09005 * 110.59729 * 335.83812 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 0.0000 2.4985 6 6 3.5701 -0.7219 1.2489 7 6 1.5377 -2.1421 1.2493 8 8 0.8400 -2.5387 0.3399 9 7 1.8629 -2.9718 2.2603 10 6 1.3740 -4.3529 2.2606 11 1 0.3848 -4.3986 1.8053 12 6 2.3520 -5.2582 1.4914 13 6 2.8546 -6.3168 2.4947 14 6 1.7442 -6.3756 3.5729 15 1 0.9087 -6.9903 3.2379 16 6 2.2939 -6.8909 4.8781 17 1 2.3441 -6.2391 5.7379 18 6 2.7328 -8.1943 4.9747 19 7 2.6722 -8.9879 3.9277 20 14 3.4148 -8.8327 6.5923 21 1 3.8145 -10.2542 6.4344 22 1 4.5985 -8.0257 6.9834 23 1 2.3731 -8.7260 7.6453 24 6 1.3166 -4.8928 3.7046 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6768 1.9563 0.8899 32 1 1.8938 -0.5135 3.3885 33 1 1.8935 1.0277 2.4984 34 1 0.4401 0.0001 2.4985 35 1 3.9329 -1.2360 0.3589 36 1 3.9338 0.3057 1.2486 37 1 3.9334 -1.2354 2.1391 38 1 2.4200 -2.6543 2.9882 39 1 1.8374 -5.7442 0.6624 40 1 3.1899 -4.6700 1.1175 41 1 3.8002 -6.0039 2.9376 42 1 2.9632 -7.2848 2.0056 43 1 2.3184 -8.6562 3.0876 44 1 0.3028 -4.8216 4.0985 45 1 2.0125 -4.3505 4.3448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452558864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:40 Heat of formation + Delta-G solvation = -93.040471 kcal Electronic energy + Delta-G solvation = -21515.958981 eV Core-core repulsion = 18531.053858 eV Total energy + Delta-G solvation = -2984.905123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60817 -39.35560 -37.57150 -35.61834 -33.98006 -32.07360 -29.98625 -28.84749 -28.46190 -27.57172 -25.81018 -24.80048 -22.41429 -21.70345 -20.91250 -19.62984 -18.90798 -17.74135 -17.41810 -16.63606 -15.94693 -15.80360 -15.61183 -15.34638 -15.20663 -14.75230 -14.21829 -14.06637 -13.97085 -13.72247 -13.09813 -13.07047 -12.88298 -12.79695 -12.74539 -12.56185 -12.53596 -12.35546 -12.14186 -11.94560 -11.91660 -11.75063 -11.62685 -11.43303 -11.36089 -11.29310 -10.53841 -10.45487 -10.43838 -9.98499 -8.54645 -6.28059 1.55701 1.63232 1.67657 1.81842 2.22548 2.61222 3.23942 3.57671 3.68228 3.83333 3.84732 3.90281 4.02904 4.19923 4.36398 4.43672 4.52981 4.59363 4.60182 4.70710 4.75284 4.82971 4.86165 4.88093 4.90348 4.91842 4.95378 4.96714 5.07657 5.10221 5.12699 5.15069 5.18988 5.28952 5.35041 5.43015 5.53232 5.59520 5.64128 5.71796 6.13313 6.27609 6.61540 6.68596 7.30952 7.52899 8.83713 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039578 B = 0.003918 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.288548 B = 7145.335781 C = 7347.222550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.070 4.070 3 C -0.145 4.145 4 C -0.072 4.072 5 C -0.143 4.143 6 C -0.142 4.142 7 C 0.514 3.486 8 O -0.578 6.578 9 N -0.709 5.709 10 C 0.151 3.849 11 H 0.069 0.931 12 C -0.121 4.121 13 C -0.104 4.104 14 C 0.022 3.978 15 H -0.005 1.005 16 C -0.604 4.604 17 H 0.051 0.949 18 C -0.033 4.033 19 N -0.941 5.941 20 Si 1.112 2.888 21 H -0.289 1.289 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.099 4.099 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.409 0.591 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.030 0.970 43 H 0.261 0.739 44 H 0.058 0.942 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 22.001 -3.417 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.089 4.089 3 C -0.201 4.201 4 C -0.075 4.075 5 C -0.200 4.200 6 C -0.199 4.199 7 C 0.302 3.698 8 O -0.458 6.458 9 N -0.360 5.360 10 C 0.046 3.954 11 H 0.087 0.913 12 C -0.159 4.159 13 C -0.142 4.142 14 C 0.003 3.997 15 H 0.013 0.987 16 C -0.642 4.642 17 H 0.069 0.931 18 C -0.231 4.231 19 N -0.579 5.579 20 Si 0.935 3.065 21 H -0.215 1.215 22 H -0.194 1.194 23 H -0.198 1.198 24 C -0.137 4.137 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.246 0.754 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.227 20.394 -3.326 20.700 hybrid contribution -0.676 0.657 -0.842 1.264 sum 0.550 21.051 -4.169 21.467 Atomic orbital electron populations 1.22078 0.95642 1.02207 1.01651 1.20875 0.95861 0.96786 0.95400 1.21946 1.01707 0.93787 1.02708 1.20850 0.97979 0.89654 0.98982 1.21999 1.01443 1.01925 0.94667 1.21954 0.91266 1.04396 1.02329 1.21320 0.79034 0.88552 0.80859 1.90605 1.39708 1.78262 1.37242 1.46176 1.53119 1.11206 1.25502 1.21411 0.96753 0.80822 0.96419 0.91327 1.22472 0.98727 0.97130 0.97618 1.22338 0.99284 0.96280 0.96315 1.19721 0.93057 0.92522 0.94399 0.98664 1.22308 1.45096 0.99381 0.97373 0.93052 1.27191 0.95411 0.94418 1.06073 1.70906 1.44906 1.39286 1.02813 0.82989 0.76772 0.75557 0.71219 1.21511 1.19409 1.19751 1.22436 1.00765 0.96522 0.93998 0.92001 0.92645 0.93141 0.92924 0.91289 0.92267 0.91072 0.91467 0.88770 0.92590 0.93318 0.88658 0.91462 0.75378 0.92975 0.91564 0.93422 0.95082 0.92847 0.92298 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 8.52 71.98 0.61 -2.91 16 2 C -0.07 -1.40 1.92 -10.79 -0.02 -1.42 16 3 C -0.14 -1.90 8.49 71.98 0.61 -1.29 16 4 C -0.07 -1.41 0.43 -52.93 -0.02 -1.43 16 5 C -0.14 -2.18 7.67 71.98 0.55 -1.63 16 6 C -0.14 -2.29 8.02 71.98 0.58 -1.71 16 7 C 0.51 14.73 6.18 87.66 0.54 15.27 16 8 O -0.58 -21.23 13.31 -3.04 -0.04 -21.27 16 9 N -0.71 -20.08 4.77 -439.10 -2.09 -22.17 16 10 C 0.15 5.39 3.25 45.72 0.15 5.53 16 11 H 0.07 2.65 7.56 -2.39 -0.02 2.63 16 12 C -0.12 -4.66 6.59 31.32 0.21 -4.45 16 13 C -0.10 -4.78 5.69 31.67 0.18 -4.60 16 14 C 0.02 1.08 2.37 -10.25 -0.02 1.06 16 15 H 0.00 -0.26 7.91 -2.39 -0.02 -0.28 16 16 C -0.60 -32.97 8.49 25.60 0.22 -32.75 16 17 H 0.05 2.72 7.77 -2.91 -0.02 2.69 16 18 C -0.03 -1.85 5.36 84.65 0.45 -1.39 16 19 N -0.94 -57.27 13.49 21.45 0.29 -56.98 16 20 Si 1.11 49.37 29.90 68.60 2.05 51.42 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 C -0.10 -3.87 5.94 31.67 0.19 -3.68 16 25 H 0.06 1.18 6.43 -2.39 -0.02 1.17 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 1.48 5.51 -2.39 -0.01 1.47 16 28 H 0.05 1.27 8.10 -2.38 -0.02 1.25 16 29 H 0.07 0.76 6.43 -2.39 -0.02 0.74 16 30 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.77 6.43 -2.39 -0.02 0.75 16 32 H 0.07 0.94 7.56 -2.39 -0.02 0.92 16 33 H 0.09 0.99 6.43 -2.39 -0.02 0.98 16 34 H 0.06 0.96 6.43 -2.39 -0.02 0.95 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.06 6.43 -2.39 -0.02 1.05 16 37 H 0.07 1.01 7.57 -2.39 -0.02 0.99 16 38 H 0.41 9.52 7.20 -92.71 -0.67 8.86 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.07 2.37 7.92 -2.39 -0.02 2.35 16 41 H 0.05 2.23 8.04 -2.39 -0.02 2.21 16 42 H 0.03 1.55 6.66 -2.39 -0.02 1.54 16 43 H 0.26 15.99 5.56 -92.71 -0.52 15.48 16 44 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.07 2.71 7.63 -2.38 -0.02 2.69 16 Total: -1.00 -67.22 335.98 4.98 -62.24 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.55 Total: 22.17 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 4.22 Total: -35.40 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -1.80 Total: -79.15 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.04 Total: -21.27 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.05 Total: 51.42 kcal Total: -67.22 4.98 -62.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452558864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.803 kcal (2) G-P(sol) polarization free energy of solvation -67.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds