Wall clock time and date at job start Mon Mar 30 2020 07:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47184 * 2 1 4 4 C 1.53006 * 109.47126 * 301.54880 * 3 2 1 5 5 C 1.53000 * 109.46744 * 294.97504 * 4 3 2 6 6 C 1.53005 * 109.47306 * 61.54957 * 3 2 1 7 7 C 1.50695 * 109.46927 * 64.99820 * 6 3 2 8 8 O 1.21281 * 120.00121 * 359.97438 * 7 6 3 9 9 N 1.34779 * 119.99474 * 180.02562 * 7 6 3 10 10 C 1.46504 * 119.99488 * 179.72584 * 9 7 6 11 11 H 1.08997 * 110.01912 * 325.96849 * 10 9 7 12 12 C 1.53871 * 110.03443 * 87.37120 * 10 9 7 13 13 C 1.54266 * 106.59986 * 119.28110 * 12 10 9 14 14 C 1.54893 * 104.19585 * 23.61164 * 13 12 10 15 15 H 1.08993 * 110.75743 * 80.55881 * 14 13 12 16 16 C 1.50700 * 110.75210 * 203.74308 * 14 13 12 17 17 H 1.08003 * 119.99758 * 118.54780 * 16 14 13 18 18 C 1.37877 * 120.00258 * 298.54224 * 16 14 13 19 19 N 1.31510 * 120.00206 * 180.02562 * 18 16 14 20 20 Si 1.86802 * 119.99809 * 0.02562 * 18 16 14 21 21 H 1.48501 * 109.47170 * 89.99741 * 20 18 16 22 22 H 1.48497 * 109.47263 * 209.99948 * 20 18 16 23 23 H 1.48503 * 109.47328 * 329.99760 * 20 18 16 24 24 C 1.54275 * 110.03062 * 204.58578 * 10 9 7 25 25 H 1.09004 * 109.47369 * 181.88812 * 1 2 3 26 26 H 1.08999 * 109.47166 * 301.89113 * 1 2 3 27 27 H 1.08998 * 109.47165 * 61.88455 * 1 2 3 28 28 H 1.08994 * 109.47187 * 239.99852 * 2 1 3 29 29 H 1.08996 * 109.46760 * 119.99978 * 2 1 3 30 30 H 1.09002 * 109.47580 * 181.55040 * 3 2 1 31 31 H 1.08994 * 109.47074 * 54.97555 * 4 3 2 32 32 H 1.09000 * 109.46816 * 174.97955 * 4 3 2 33 33 H 1.09006 * 109.46876 * 185.79866 * 5 4 3 34 34 H 1.08997 * 109.47362 * 305.80101 * 5 4 3 35 35 H 1.09001 * 109.47171 * 65.80231 * 5 4 3 36 36 H 1.09007 * 109.46786 * 304.99780 * 6 3 2 37 37 H 1.08994 * 109.47055 * 185.00212 * 6 3 2 38 38 H 0.96998 * 120.00234 * 0.02562 * 9 7 6 39 39 H 1.08999 * 110.03205 * 238.56552 * 12 10 9 40 40 H 1.09001 * 110.02880 * 359.97438 * 12 10 9 41 41 H 1.09001 * 110.48776 * 142.29248 * 13 12 10 42 42 H 1.09007 * 110.48520 * 264.79720 * 13 12 10 43 43 H 0.97000 * 119.99982 * 179.97438 * 19 18 16 44 44 H 1.08998 * 110.48151 * 335.78513 * 24 10 9 45 45 H 1.08998 * 110.48612 * 98.42279 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4984 2.1749 -1.2293 5 6 2.0769 1.5416 -2.4962 6 6 1.5621 2.1524 1.2683 7 6 2.1940 1.5061 2.4741 8 8 2.9515 0.5696 2.3330 9 7 1.9164 1.9683 3.7094 10 6 2.5260 1.3361 4.8820 11 1 2.6436 0.2662 4.7103 12 6 3.8941 1.9767 5.1747 13 6 3.8018 2.5864 6.5887 14 6 2.6702 1.7824 7.2760 15 1 3.0428 0.8249 7.6397 16 6 2.0578 2.5769 8.4006 17 1 1.0121 2.8447 8.3655 18 6 2.8323 2.9618 9.4743 19 7 2.2977 3.6547 10.4559 20 14 4.6411 2.4991 9.5347 21 1 5.4469 3.5661 8.8887 22 1 5.0659 2.3459 10.9493 23 1 4.8485 1.2173 8.8141 24 6 1.6494 1.5779 6.1283 25 1 -0.3634 -1.0271 0.0339 26 1 -0.3633 0.5429 0.8725 27 1 -0.3633 0.4843 -0.9064 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.1296 1.4427 -0.0278 31 1 0.4113 2.0979 -1.2485 32 1 1.7876 3.2248 -1.1834 33 1 1.7741 2.1257 -3.3653 34 1 3.1648 1.5256 -2.4303 35 1 1.7040 0.5222 -2.5957 36 1 0.4772 2.0750 1.3412 37 1 1.8493 3.2030 1.2267 38 1 1.3096 2.7166 3.8222 39 1 4.6757 1.2175 5.1457 40 1 4.1046 2.7576 4.4440 41 1 4.7425 2.4544 7.1232 42 1 3.5414 3.6434 6.5321 43 1 2.8426 3.9252 11.2115 44 1 1.0386 2.4712 5.9975 45 1 1.0202 0.7101 6.3263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452561611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:45 Heat of formation + Delta-G solvation = -74.414521 kcal Electronic energy + Delta-G solvation = -20929.346480 eV Core-core repulsion = 17945.249040 eV Total energy + Delta-G solvation = -2984.097441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.00592 -37.90218 -36.65370 -33.70949 -32.14312 -31.40688 -30.15111 -28.47330 -27.57428 -25.10449 -23.71616 -23.38527 -20.76440 -19.81055 -19.31219 -18.93860 -16.88584 -16.82930 -16.05637 -15.54733 -15.50268 -14.99732 -14.24982 -14.22584 -13.73583 -13.51438 -13.04175 -12.84113 -12.70026 -12.53827 -12.39309 -12.15564 -12.08872 -11.66447 -11.56660 -11.30271 -11.08634 -10.97103 -10.58203 -10.57363 -10.48964 -10.45780 -10.11712 -9.98029 -9.78248 -9.46787 -9.41786 -9.03406 -8.68127 -8.54381 -6.08760 -4.07904 2.83003 3.29069 3.38566 3.40702 3.43487 4.41659 4.60400 4.65963 4.70346 5.02397 5.08137 5.16728 5.20382 5.27233 5.33354 5.38413 5.44273 5.46212 5.54064 5.59159 5.61367 5.69273 5.75543 5.87563 5.96560 6.04373 6.11228 6.14129 6.16723 6.28968 6.30846 6.42056 6.46737 6.49007 6.57721 6.69984 6.83693 7.02505 7.08598 7.50761 7.73919 7.78627 8.45614 8.50751 8.94252 9.54465 11.04455 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044197 B = 0.003528 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.380398 B = 7934.168330 C = 8096.931918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.127 4.127 3 C -0.070 4.070 4 C -0.123 4.123 5 C -0.152 4.152 6 C -0.143 4.143 7 C 0.509 3.491 8 O -0.544 6.544 9 N -0.721 5.721 10 C 0.137 3.863 11 H 0.082 0.918 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.015 3.985 15 H 0.034 0.966 16 C -0.510 4.510 17 H 0.073 0.927 18 C 0.071 3.929 19 N -0.903 5.903 20 Si 0.882 3.118 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.265 1.265 24 C -0.110 4.110 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.398 0.602 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.263 0.737 44 H 0.067 0.933 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -2.803 -22.074 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.165 4.165 3 C -0.089 4.089 4 C -0.161 4.161 5 C -0.209 4.209 6 C -0.183 4.183 7 C 0.295 3.705 8 O -0.422 6.422 9 N -0.372 5.372 10 C 0.033 3.967 11 H 0.100 0.900 12 C -0.168 4.168 13 C -0.168 4.168 14 C -0.004 4.004 15 H 0.052 0.948 16 C -0.548 4.548 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.541 5.541 20 Si 0.712 3.288 21 H -0.205 1.205 22 H -0.223 1.223 23 H -0.189 1.189 24 C -0.148 4.148 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.233 0.767 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.739 -3.395 -21.994 22.322 hybrid contribution 0.742 0.350 0.275 0.866 sum -0.996 -3.045 -21.718 21.953 Atomic orbital electron populations 1.21908 0.96608 1.01341 1.01450 1.21678 0.95280 0.96303 1.03196 1.20930 1.00884 0.95006 0.92087 1.21653 1.00852 0.99246 0.94338 1.21784 1.01071 1.00901 0.97148 1.21846 1.02160 1.00907 0.93345 1.20669 0.81543 0.83645 0.84602 1.90640 1.36651 1.28700 1.86171 1.46370 1.48667 1.36092 1.06041 1.21815 0.93242 0.97204 0.84440 0.89986 1.22542 0.96430 0.99601 0.98277 1.22821 0.99603 1.00805 0.93598 1.20068 0.91510 0.95892 0.92969 0.94759 1.20973 0.97939 1.33689 1.02216 0.90850 1.24990 0.98317 0.94456 0.95314 1.69899 1.36466 1.38183 1.09532 0.86897 0.85940 0.79731 0.76260 1.20467 1.22289 1.18949 1.22581 0.97974 1.00951 0.93277 0.93135 0.92793 0.92750 0.92285 0.89887 0.90534 0.91554 0.92179 0.93051 0.92751 0.92534 0.88805 0.89212 0.76730 0.92358 0.92546 0.93617 0.91506 0.92683 0.91402 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.21 37.16 0.34 -1.05 16 2 C -0.13 -1.33 5.18 -26.73 -0.14 -1.47 16 3 C -0.07 -0.69 1.81 -90.62 -0.16 -0.85 16 4 C -0.12 -0.96 5.15 -26.73 -0.14 -1.10 16 5 C -0.15 -1.12 9.52 37.16 0.35 -0.77 16 6 C -0.14 -1.40 4.99 -27.88 -0.14 -1.54 16 7 C 0.51 6.99 7.53 -10.99 -0.08 6.91 16 8 O -0.54 -9.33 13.63 5.56 0.08 -9.26 16 9 N -0.72 -9.95 4.99 -52.72 -0.26 -10.22 16 10 C 0.14 2.30 3.24 -66.81 -0.22 2.09 16 11 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 12 C -0.13 -2.33 6.59 -25.62 -0.17 -2.50 16 13 C -0.13 -2.74 5.07 -25.07 -0.13 -2.86 16 14 C 0.01 0.34 2.30 -89.74 -0.21 0.13 16 15 H 0.03 0.81 7.37 -51.93 -0.38 0.42 16 16 C -0.51 -13.91 9.13 -34.44 -0.31 -14.22 16 17 H 0.07 2.15 8.03 -52.48 -0.42 1.73 16 18 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 19 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 20 Si 0.88 21.75 24.46 -169.99 -4.16 17.59 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.26 -6.27 6.48 56.52 0.37 -5.91 16 24 C -0.11 -2.04 5.95 -25.03 -0.15 -2.19 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.49 6.27 -51.93 -0.33 0.16 16 27 H 0.05 0.42 6.39 -51.93 -0.33 0.09 16 28 H 0.06 0.58 6.77 -51.93 -0.35 0.23 16 29 H 0.08 1.11 5.92 -51.93 -0.31 0.80 16 30 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 31 H 0.07 0.48 6.17 -51.93 -0.32 0.16 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.42 6.89 -51.93 -0.36 0.06 16 36 H 0.09 0.78 6.18 -51.92 -0.32 0.46 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.40 4.60 8.35 -40.82 -0.34 4.26 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.96 7.92 -51.93 -0.41 0.54 16 41 H 0.05 0.99 4.90 -51.93 -0.25 0.74 16 42 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.07 1.23 7.63 -51.93 -0.40 0.83 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -30.68 336.54 -7.62 -38.30 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.88 Total: 2.56 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -1.24 Total: -17.51 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.51 Total: -36.76 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.16 Total: 17.59 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.68 -7.62 -38.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452561611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.113 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds