Wall clock time and date at job start Mon Mar 30 2020 07:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47184 * 2 1 4 4 C 1.53006 * 109.47126 * 301.54880 * 3 2 1 5 5 C 1.53000 * 109.46744 * 294.97504 * 4 3 2 6 6 C 1.53005 * 109.47306 * 61.54957 * 3 2 1 7 7 C 1.50695 * 109.46927 * 64.99820 * 6 3 2 8 8 O 1.21281 * 120.00121 * 359.97438 * 7 6 3 9 9 N 1.34779 * 119.99474 * 180.02562 * 7 6 3 10 10 C 1.46504 * 119.99488 * 179.72584 * 9 7 6 11 11 H 1.08997 * 110.01912 * 325.96849 * 10 9 7 12 12 C 1.53871 * 110.03443 * 87.37120 * 10 9 7 13 13 C 1.54266 * 106.59986 * 119.28110 * 12 10 9 14 14 C 1.54893 * 104.19585 * 23.61164 * 13 12 10 15 15 H 1.08993 * 110.75743 * 80.55881 * 14 13 12 16 16 C 1.50700 * 110.75210 * 203.74308 * 14 13 12 17 17 H 1.08003 * 119.99758 * 118.54780 * 16 14 13 18 18 C 1.37877 * 120.00258 * 298.54224 * 16 14 13 19 19 N 1.31510 * 120.00206 * 180.02562 * 18 16 14 20 20 Si 1.86802 * 119.99809 * 0.02562 * 18 16 14 21 21 H 1.48501 * 109.47170 * 89.99741 * 20 18 16 22 22 H 1.48497 * 109.47263 * 209.99948 * 20 18 16 23 23 H 1.48503 * 109.47328 * 329.99760 * 20 18 16 24 24 C 1.54275 * 110.03062 * 204.58578 * 10 9 7 25 25 H 1.09004 * 109.47369 * 181.88812 * 1 2 3 26 26 H 1.08999 * 109.47166 * 301.89113 * 1 2 3 27 27 H 1.08998 * 109.47165 * 61.88455 * 1 2 3 28 28 H 1.08994 * 109.47187 * 239.99852 * 2 1 3 29 29 H 1.08996 * 109.46760 * 119.99978 * 2 1 3 30 30 H 1.09002 * 109.47580 * 181.55040 * 3 2 1 31 31 H 1.08994 * 109.47074 * 54.97555 * 4 3 2 32 32 H 1.09000 * 109.46816 * 174.97955 * 4 3 2 33 33 H 1.09006 * 109.46876 * 185.79866 * 5 4 3 34 34 H 1.08997 * 109.47362 * 305.80101 * 5 4 3 35 35 H 1.09001 * 109.47171 * 65.80231 * 5 4 3 36 36 H 1.09007 * 109.46786 * 304.99780 * 6 3 2 37 37 H 1.08994 * 109.47055 * 185.00212 * 6 3 2 38 38 H 0.96998 * 120.00234 * 0.02562 * 9 7 6 39 39 H 1.08999 * 110.03205 * 238.56552 * 12 10 9 40 40 H 1.09001 * 110.02880 * 359.97438 * 12 10 9 41 41 H 1.09001 * 110.48776 * 142.29248 * 13 12 10 42 42 H 1.09007 * 110.48520 * 264.79720 * 13 12 10 43 43 H 0.97000 * 119.99982 * 179.97438 * 19 18 16 44 44 H 1.08998 * 110.48151 * 335.78513 * 24 10 9 45 45 H 1.08998 * 110.48612 * 98.42279 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4984 2.1749 -1.2293 5 6 2.0769 1.5416 -2.4962 6 6 1.5621 2.1524 1.2683 7 6 2.1940 1.5061 2.4741 8 8 2.9515 0.5696 2.3330 9 7 1.9164 1.9683 3.7094 10 6 2.5260 1.3361 4.8820 11 1 2.6436 0.2662 4.7103 12 6 3.8941 1.9767 5.1747 13 6 3.8018 2.5864 6.5887 14 6 2.6702 1.7824 7.2760 15 1 3.0428 0.8249 7.6397 16 6 2.0578 2.5769 8.4006 17 1 1.0121 2.8447 8.3655 18 6 2.8323 2.9618 9.4743 19 7 2.2977 3.6547 10.4559 20 14 4.6411 2.4991 9.5347 21 1 5.4469 3.5661 8.8887 22 1 5.0659 2.3459 10.9493 23 1 4.8485 1.2173 8.8141 24 6 1.6494 1.5779 6.1283 25 1 -0.3634 -1.0271 0.0339 26 1 -0.3633 0.5429 0.8725 27 1 -0.3633 0.4843 -0.9064 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.1296 1.4427 -0.0278 31 1 0.4113 2.0979 -1.2485 32 1 1.7876 3.2248 -1.1834 33 1 1.7741 2.1257 -3.3653 34 1 3.1648 1.5256 -2.4303 35 1 1.7040 0.5222 -2.5957 36 1 0.4772 2.0750 1.3412 37 1 1.8493 3.2030 1.2267 38 1 1.3096 2.7166 3.8222 39 1 4.6757 1.2175 5.1457 40 1 4.1046 2.7576 4.4440 41 1 4.7425 2.4544 7.1232 42 1 3.5414 3.6434 6.5321 43 1 2.8426 3.9252 11.2115 44 1 1.0386 2.4712 5.9975 45 1 1.0202 0.7101 6.3263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452561611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:44 Heat of formation + Delta-G solvation = -93.071502 kcal Electronic energy + Delta-G solvation = -20930.155508 eV Core-core repulsion = 17945.249040 eV Total energy + Delta-G solvation = -2984.906468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12180 -39.18995 -37.69943 -35.24593 -34.01594 -32.06888 -31.13344 -30.12368 -29.01284 -26.13169 -25.19987 -24.27143 -21.98363 -21.24448 -20.86594 -19.80677 -18.82370 -17.90609 -16.99462 -16.92129 -16.76098 -16.21225 -15.87766 -15.12329 -14.95544 -14.77447 -14.37627 -14.17028 -14.08524 -13.69462 -13.48651 -13.33147 -12.88559 -12.82720 -12.78731 -12.55385 -12.36475 -12.18492 -11.93427 -11.82510 -11.63837 -11.53876 -11.35820 -11.30542 -11.25345 -11.18419 -11.04655 -10.69974 -10.54290 -9.91794 -8.28610 -6.31075 1.32657 1.36852 1.46436 1.76641 2.34003 2.34332 3.07370 3.73226 3.85329 3.88151 3.91710 4.00243 4.09261 4.26976 4.44928 4.48033 4.60896 4.60978 4.65619 4.67677 4.72374 4.73800 4.83858 4.90210 4.94234 4.97424 4.98512 5.02917 5.10944 5.13300 5.19165 5.25351 5.35264 5.37828 5.40072 5.44714 5.53470 5.63350 5.69664 5.72693 5.79201 6.32579 6.70253 6.75574 7.34660 7.39730 8.88008 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044197 B = 0.003528 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.380398 B = 7934.168330 C = 8096.931918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.068 4.068 4 C -0.118 4.118 5 C -0.153 4.153 6 C -0.135 4.135 7 C 0.506 3.494 8 O -0.580 6.580 9 N -0.715 5.715 10 C 0.149 3.851 11 H 0.075 0.925 12 C -0.121 4.121 13 C -0.126 4.126 14 C 0.006 3.994 15 H 0.029 0.971 16 C -0.509 4.509 17 H 0.039 0.961 18 C 0.014 3.986 19 N -0.950 5.950 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.298 1.298 23 H -0.249 1.249 24 C -0.100 4.100 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.412 0.588 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.059 0.941 43 H 0.264 0.736 44 H 0.071 0.929 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 -2.576 -24.475 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.087 4.087 4 C -0.155 4.155 5 C -0.210 4.210 6 C -0.175 4.175 7 C 0.295 3.705 8 O -0.460 6.460 9 N -0.367 5.367 10 C 0.044 3.956 11 H 0.093 0.907 12 C -0.160 4.160 13 C -0.164 4.164 14 C -0.013 4.013 15 H 0.047 0.953 16 C -0.547 4.547 17 H 0.058 0.942 18 C -0.183 4.183 19 N -0.591 5.591 20 Si 0.766 3.234 21 H -0.193 1.193 22 H -0.226 1.226 23 H -0.173 1.173 24 C -0.138 4.138 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.248 0.752 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.630 -3.160 -24.425 24.682 hybrid contribution 0.622 0.261 1.016 1.220 sum -1.008 -2.899 -23.409 23.609 Atomic orbital electron populations 1.21885 0.95214 1.01539 1.02311 1.21617 0.96462 0.96598 1.01676 1.20902 0.99684 0.94893 0.93267 1.21618 1.01388 0.99383 0.93106 1.21794 1.00626 1.01051 0.97560 1.21895 1.02999 1.01581 0.90998 1.21373 0.80870 0.83023 0.85242 1.90639 1.38332 1.30366 1.86649 1.46245 1.48766 1.36364 1.05338 1.21451 0.92415 0.96979 0.84785 0.90723 1.22466 0.97165 0.99891 0.96468 1.22679 0.98297 1.00202 0.95261 1.20050 0.93337 0.94983 0.92974 0.95324 1.21279 0.96604 1.33228 1.03596 0.94239 1.25795 1.02774 0.94629 0.95063 1.70037 1.38274 1.40236 1.10561 0.85959 0.80800 0.80359 0.76235 1.19253 1.22562 1.17334 1.22433 0.97342 1.01422 0.92644 0.93344 0.92699 0.91040 0.92122 0.93128 0.92662 0.90402 0.91215 0.91869 0.93496 0.92724 0.86696 0.86936 0.75174 0.92065 0.91221 0.94153 0.92255 0.92654 0.91052 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.21 71.98 0.66 -1.73 16 2 C -0.13 -2.49 5.18 30.59 0.16 -2.33 16 3 C -0.07 -1.21 1.81 -10.79 -0.02 -1.23 16 4 C -0.12 -1.47 5.15 30.60 0.16 -1.32 16 5 C -0.15 -1.92 9.52 71.98 0.69 -1.24 16 6 C -0.14 -2.25 4.99 29.85 0.15 -2.10 16 7 C 0.51 12.90 7.53 87.66 0.66 13.56 16 8 O -0.58 -19.38 13.63 -3.03 -0.04 -19.43 16 9 N -0.72 -18.09 4.99 -439.09 -2.19 -20.28 16 10 C 0.15 4.74 3.24 45.72 0.15 4.89 16 11 H 0.07 2.54 7.58 -2.39 -0.02 2.52 16 12 C -0.12 -4.08 6.59 31.32 0.21 -3.88 16 13 C -0.13 -5.11 5.07 31.67 0.16 -4.95 16 14 C 0.01 0.26 2.30 -10.22 -0.02 0.23 16 15 H 0.03 1.32 7.37 -2.39 -0.02 1.30 16 16 C -0.51 -28.13 9.13 25.60 0.23 -27.90 16 17 H 0.04 2.39 8.03 -2.91 -0.02 2.36 16 18 C 0.01 0.82 5.46 84.66 0.46 1.28 16 19 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 20 Si 0.94 44.73 24.46 68.60 1.68 46.41 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.25 -11.14 6.48 99.48 0.64 -10.49 16 24 C -0.10 -3.61 5.95 31.70 0.19 -3.42 16 25 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.05 0.84 6.27 -2.39 -0.01 0.83 16 27 H 0.07 0.88 6.39 -2.39 -0.02 0.86 16 28 H 0.06 1.14 6.77 -2.39 -0.02 1.12 16 29 H 0.05 1.34 5.92 -2.39 -0.01 1.33 16 30 H 0.05 1.22 7.96 -2.39 -0.02 1.20 16 31 H 0.08 0.82 6.17 -2.39 -0.01 0.81 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 0.70 6.89 -2.39 -0.02 0.68 16 36 H 0.12 1.48 6.18 -2.38 -0.01 1.47 16 37 H 0.11 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.41 8.33 8.35 -92.71 -0.77 7.56 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.07 2.17 7.92 -2.39 -0.02 2.15 16 41 H 0.04 1.66 4.90 -2.39 -0.01 1.65 16 42 H 0.06 2.47 8.04 -2.38 -0.02 2.45 16 43 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.07 2.50 7.63 -2.39 -0.02 2.49 16 45 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -67.30 336.54 3.70 -63.60 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.13 Total: 18.40 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 3.83 Total: -30.13 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -1.89 Total: -78.84 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.04 Total: -19.43 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.68 Total: 46.41 kcal Total: -67.30 3.70 -63.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452561611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.475 kcal (2) G-P(sol) polarization free energy of solvation -67.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds