Wall clock time and date at job start Mon Mar 30 2020 07:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 C 1.52993 * 109.47239 * 240.00359 * 2 1 3 5 5 C 1.52998 * 109.46809 * 119.99904 * 2 1 3 6 6 C 1.52999 * 109.47303 * 60.00332 * 5 2 1 7 7 C 1.50698 * 109.47004 * 179.97438 * 6 5 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 H 1.09004 * 110.01965 * 325.33758 * 10 9 7 12 12 C 1.53869 * 110.03382 * 86.73307 * 10 9 7 13 13 C 1.54268 * 106.60150 * 119.28455 * 12 10 9 14 14 C 1.54886 * 104.19503 * 23.61168 * 13 12 10 15 15 H 1.09000 * 110.75812 * 80.55473 * 14 13 12 16 16 C 1.50701 * 110.75487 * 203.74446 * 14 13 12 17 17 H 1.08005 * 119.99858 * 118.54314 * 16 14 13 18 18 C 1.37875 * 120.00324 * 298.54567 * 16 14 13 19 19 N 1.31506 * 120.00248 * 180.02562 * 18 16 14 20 20 Si 1.86803 * 119.99508 * 359.97438 * 18 16 14 21 21 H 1.48501 * 109.46616 * 90.00355 * 20 18 16 22 22 H 1.48504 * 109.46984 * 209.99810 * 20 18 16 23 23 H 1.48495 * 109.47533 * 330.00338 * 20 18 16 24 24 C 1.54267 * 110.03152 * 203.89945 * 10 9 7 25 25 H 1.08995 * 109.47357 * 300.00207 * 1 2 3 26 26 H 1.09003 * 109.47092 * 60.00098 * 1 2 3 27 27 H 1.09001 * 109.46873 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47302 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47611 * 299.99858 * 3 2 1 30 30 H 1.09009 * 109.47378 * 59.99838 * 3 2 1 31 31 H 1.09001 * 109.47143 * 299.99779 * 4 2 1 32 32 H 1.08995 * 109.47584 * 59.99515 * 4 2 1 33 33 H 1.09001 * 109.47191 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47250 * 299.99648 * 5 2 1 35 35 H 1.09007 * 109.46897 * 180.02562 * 5 2 1 36 36 H 1.09003 * 109.46690 * 59.99829 * 6 5 2 37 37 H 1.08993 * 109.46773 * 300.00165 * 6 5 2 38 38 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 39 39 H 1.09004 * 110.03501 * 238.57198 * 12 10 9 40 40 H 1.09000 * 110.03348 * 359.97438 * 12 10 9 41 41 H 1.08998 * 110.48894 * 142.29197 * 13 12 10 42 42 H 1.08998 * 110.48548 * 264.79787 * 13 12 10 43 43 H 0.96999 * 120.00270 * 179.97438 * 19 18 16 44 44 H 1.08998 * 110.48824 * 335.78127 * 24 10 9 45 45 H 1.08999 * 110.48755 * 98.43112 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2493 7 6 2.0328 -2.8743 2.4794 8 8 2.7300 -2.2848 3.2779 9 7 1.7069 -4.1645 2.6929 10 6 2.2006 -4.8570 3.8857 11 1 3.1994 -4.5004 4.1376 12 6 1.2430 -4.6205 5.0667 13 6 0.7225 -6.0076 5.4967 14 6 1.8094 -6.9922 4.9987 15 1 2.6520 -7.0193 5.6896 16 6 1.2334 -8.3717 4.8079 17 1 1.2392 -8.8287 3.8294 18 6 0.6988 -9.0503 5.8825 19 7 0.1966 -10.2542 5.7161 20 14 0.6894 -8.2599 7.5751 21 1 -0.5672 -7.4891 7.7544 22 1 0.7746 -9.3165 8.6152 23 1 1.8530 -7.3461 7.7013 24 6 2.2286 -6.3796 3.6392 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7207 -1.2494 34 1 1.6766 -0.2074 2.1392 35 1 3.1300 -0.7208 1.2495 36 1 1.8934 -2.6775 0.3592 37 1 0.4401 -2.1637 1.2492 38 1 1.1490 -4.6359 2.0545 39 1 1.7772 -4.1498 5.8921 40 1 0.4112 -3.9901 4.7525 41 1 0.6281 -6.0602 6.5813 42 1 -0.2347 -6.2202 5.0208 43 1 -0.1791 -10.7317 6.4722 44 1 1.5157 -6.6533 2.8614 45 1 3.2334 -6.7037 3.3684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452562744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:54 Heat of formation + Delta-G solvation = -76.827406 kcal Electronic energy + Delta-G solvation = -20709.101744 eV Core-core repulsion = 17724.899673 eV Total energy + Delta-G solvation = -2984.202071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87414 -38.13450 -37.08965 -33.70472 -32.18287 -31.20531 -28.49867 -27.66413 -27.54496 -27.52393 -24.62093 -23.35562 -20.59607 -19.77806 -19.20413 -18.76582 -16.98407 -16.87203 -15.79692 -15.46711 -15.11187 -14.66725 -14.52938 -14.38409 -13.97534 -13.32675 -13.23784 -12.79105 -12.70014 -12.54028 -12.39581 -12.13889 -12.01024 -11.91948 -11.64848 -11.32148 -11.10028 -10.96854 -10.78879 -10.75248 -10.69115 -10.47774 -10.13289 -9.98407 -9.78213 -9.52911 -9.44994 -9.03293 -8.70054 -8.54365 -6.08650 -4.07811 2.82910 3.29215 3.38682 3.40932 3.43313 4.41809 4.51862 4.52443 4.58729 4.94152 5.03300 5.13108 5.20551 5.29449 5.36421 5.38307 5.40138 5.45577 5.51819 5.53406 5.59094 5.67451 5.67669 5.80784 5.82168 5.96039 6.05123 6.12191 6.14607 6.18553 6.22610 6.30779 6.42928 6.49174 6.57340 6.69593 6.83775 7.02485 7.08604 7.50891 7.73816 7.78408 8.44808 8.50771 8.94314 9.54583 11.04563 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042989 B = 0.003350 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.167133 B = 8357.098033 C = 8528.035115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.091 4.091 6 C -0.146 4.146 7 C 0.507 3.493 8 O -0.549 6.549 9 N -0.721 5.721 10 C 0.137 3.863 11 H 0.082 0.918 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.015 3.985 15 H 0.035 0.965 16 C -0.510 4.510 17 H 0.073 0.927 18 C 0.071 3.929 19 N -0.903 5.903 20 Si 0.882 3.118 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.264 1.264 24 C -0.110 4.110 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.399 0.601 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.263 0.737 44 H 0.068 0.932 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.100 19.432 -12.129 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.202 4.202 5 C -0.129 4.129 6 C -0.185 4.185 7 C 0.293 3.707 8 O -0.426 6.426 9 N -0.372 5.372 10 C 0.033 3.967 11 H 0.100 0.900 12 C -0.169 4.169 13 C -0.168 4.168 14 C -0.005 4.005 15 H 0.053 0.947 16 C -0.548 4.548 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.541 5.541 20 Si 0.712 3.288 21 H -0.205 1.205 22 H -0.223 1.223 23 H -0.189 1.189 24 C -0.148 4.148 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.233 0.767 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.521 19.699 -11.459 22.840 hybrid contribution -0.483 0.031 0.704 0.854 sum 1.039 19.729 -10.755 22.494 Atomic orbital electron populations 1.21955 0.94656 1.01968 1.01673 1.20590 0.95677 0.95568 0.95389 1.21853 1.01048 0.95288 1.01597 1.21950 1.01098 1.00381 0.96794 1.21374 1.01269 0.93084 0.97195 1.21836 1.02675 0.97247 0.96777 1.20750 0.80269 0.82087 0.87574 1.90676 1.38388 1.66042 1.47536 1.46361 1.53066 1.11881 1.25843 1.21820 0.97588 0.93212 0.84130 0.90025 1.22543 0.98458 0.98465 0.97388 1.22819 1.01017 0.93733 0.99250 1.20060 0.94016 0.94398 0.91983 0.94742 1.20972 1.38642 0.98273 0.96931 0.90845 1.24988 0.94677 0.94593 0.98810 1.69896 1.40362 1.12347 1.31477 0.86898 0.79103 0.78539 0.84299 1.20464 1.22288 1.18944 1.22568 1.00890 0.90758 1.00545 0.92604 0.92825 0.92293 0.92635 0.92787 0.92638 0.92297 0.92829 0.92610 0.91258 0.91255 0.88896 0.88883 0.76698 0.92351 0.92544 0.93611 0.91497 0.92681 0.91379 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.12 37.16 0.30 -0.75 16 2 C -0.07 -0.56 0.80 -154.51 -0.12 -0.69 16 3 C -0.14 -1.04 8.47 37.16 0.31 -0.73 16 4 C -0.15 -1.03 8.12 37.15 0.30 -0.73 16 5 C -0.09 -0.91 3.56 -26.73 -0.10 -1.00 16 6 C -0.15 -1.43 4.99 -27.88 -0.14 -1.57 16 7 C 0.51 7.15 7.82 -10.99 -0.09 7.06 16 8 O -0.55 -9.88 15.66 5.55 0.09 -9.79 16 9 N -0.72 -10.09 4.99 -52.72 -0.26 -10.35 16 10 C 0.14 2.32 3.23 -66.82 -0.22 2.11 16 11 H 0.08 1.47 7.60 -51.93 -0.39 1.08 16 12 C -0.13 -2.35 6.59 -25.62 -0.17 -2.52 16 13 C -0.13 -2.74 5.07 -25.07 -0.13 -2.87 16 14 C 0.01 0.33 2.30 -89.78 -0.21 0.13 16 15 H 0.03 0.81 7.37 -51.93 -0.38 0.43 16 16 C -0.51 -13.92 9.12 -34.44 -0.31 -14.24 16 17 H 0.07 2.15 8.03 -52.48 -0.42 1.73 16 18 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 19 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 20 Si 0.88 21.77 24.46 -169.99 -4.16 17.61 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.26 -6.28 6.48 56.52 0.37 -5.92 16 24 C -0.11 -2.04 5.94 -25.07 -0.15 -2.19 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 31 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.09 0.76 6.43 -51.93 -0.33 0.43 16 37 H 0.09 0.78 6.43 -51.93 -0.33 0.45 16 38 H 0.40 4.62 8.34 -40.82 -0.34 4.28 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.96 7.92 -51.93 -0.41 0.55 16 41 H 0.05 0.99 4.91 -51.93 -0.25 0.74 16 42 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.07 1.24 7.63 -51.93 -0.40 0.84 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 342.69 15.07 5.16 5.16 Total: -1.00 -31.21 342.69 -7.37 -38.58 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.17 Total: 1.41 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -0.80 Total: -16.07 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.51 Total: -36.90 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.16 Total: 17.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.21 -7.37 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452562744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.247 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds