Wall clock time and date at job start Mon Mar 30 2020 07:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 C 1.52993 * 109.47239 * 240.00359 * 2 1 3 5 5 C 1.52998 * 109.46809 * 119.99904 * 2 1 3 6 6 C 1.52999 * 109.47303 * 60.00332 * 5 2 1 7 7 C 1.50698 * 109.47004 * 179.97438 * 6 5 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 H 1.09004 * 110.01965 * 325.33758 * 10 9 7 12 12 C 1.53869 * 110.03382 * 86.73307 * 10 9 7 13 13 C 1.54268 * 106.60150 * 119.28455 * 12 10 9 14 14 C 1.54886 * 104.19503 * 23.61168 * 13 12 10 15 15 H 1.09000 * 110.75812 * 80.55473 * 14 13 12 16 16 C 1.50701 * 110.75487 * 203.74446 * 14 13 12 17 17 H 1.08005 * 119.99858 * 118.54314 * 16 14 13 18 18 C 1.37875 * 120.00324 * 298.54567 * 16 14 13 19 19 N 1.31506 * 120.00248 * 180.02562 * 18 16 14 20 20 Si 1.86803 * 119.99508 * 359.97438 * 18 16 14 21 21 H 1.48501 * 109.46616 * 90.00355 * 20 18 16 22 22 H 1.48504 * 109.46984 * 209.99810 * 20 18 16 23 23 H 1.48495 * 109.47533 * 330.00338 * 20 18 16 24 24 C 1.54267 * 110.03152 * 203.89945 * 10 9 7 25 25 H 1.08995 * 109.47357 * 300.00207 * 1 2 3 26 26 H 1.09003 * 109.47092 * 60.00098 * 1 2 3 27 27 H 1.09001 * 109.46873 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47302 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47611 * 299.99858 * 3 2 1 30 30 H 1.09009 * 109.47378 * 59.99838 * 3 2 1 31 31 H 1.09001 * 109.47143 * 299.99779 * 4 2 1 32 32 H 1.08995 * 109.47584 * 59.99515 * 4 2 1 33 33 H 1.09001 * 109.47191 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47250 * 299.99648 * 5 2 1 35 35 H 1.09007 * 109.46897 * 180.02562 * 5 2 1 36 36 H 1.09003 * 109.46690 * 59.99829 * 6 5 2 37 37 H 1.08993 * 109.46773 * 300.00165 * 6 5 2 38 38 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 39 39 H 1.09004 * 110.03501 * 238.57198 * 12 10 9 40 40 H 1.09000 * 110.03348 * 359.97438 * 12 10 9 41 41 H 1.08998 * 110.48894 * 142.29197 * 13 12 10 42 42 H 1.08998 * 110.48548 * 264.79787 * 13 12 10 43 43 H 0.96999 * 120.00270 * 179.97438 * 19 18 16 44 44 H 1.08998 * 110.48824 * 335.78127 * 24 10 9 45 45 H 1.08999 * 110.48755 * 98.43112 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2493 7 6 2.0328 -2.8743 2.4794 8 8 2.7300 -2.2848 3.2779 9 7 1.7069 -4.1645 2.6929 10 6 2.2006 -4.8570 3.8857 11 1 3.1994 -4.5004 4.1376 12 6 1.2430 -4.6205 5.0667 13 6 0.7225 -6.0076 5.4967 14 6 1.8094 -6.9922 4.9987 15 1 2.6520 -7.0193 5.6896 16 6 1.2334 -8.3717 4.8079 17 1 1.2392 -8.8287 3.8294 18 6 0.6988 -9.0503 5.8825 19 7 0.1966 -10.2542 5.7161 20 14 0.6894 -8.2599 7.5751 21 1 -0.5672 -7.4891 7.7544 22 1 0.7746 -9.3165 8.6152 23 1 1.8530 -7.3461 7.7013 24 6 2.2286 -6.3796 3.6392 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7207 -1.2494 34 1 1.6766 -0.2074 2.1392 35 1 3.1300 -0.7208 1.2495 36 1 1.8934 -2.6775 0.3592 37 1 0.4401 -2.1637 1.2492 38 1 1.1490 -4.6359 2.0545 39 1 1.7772 -4.1498 5.8921 40 1 0.4112 -3.9901 4.7525 41 1 0.6281 -6.0602 6.5813 42 1 -0.2347 -6.2202 5.0208 43 1 -0.1791 -10.7317 6.4722 44 1 1.5157 -6.6533 2.8614 45 1 3.2334 -6.7037 3.3684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452562744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:53 Heat of formation + Delta-G solvation = -95.939054 kcal Electronic energy + Delta-G solvation = -20709.930488 eV Core-core repulsion = 17724.899673 eV Total energy + Delta-G solvation = -2985.030815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03493 -39.18929 -38.27197 -35.26811 -34.03057 -32.13802 -30.20401 -29.16213 -28.09392 -28.07829 -25.92757 -24.84517 -21.87212 -21.22213 -20.81378 -19.42807 -18.82969 -18.02693 -17.07955 -16.89091 -16.42842 -15.99896 -15.47914 -15.21793 -15.00886 -14.81305 -14.30728 -14.24197 -14.09119 -14.01622 -13.36718 -13.29086 -12.86556 -12.72603 -12.64004 -12.57756 -12.49202 -12.30720 -11.96884 -11.83900 -11.64125 -11.53826 -11.45187 -11.36932 -11.36717 -11.25225 -11.04785 -10.72947 -10.69312 -9.96846 -8.28423 -6.30907 1.32841 1.37067 1.46646 1.72836 2.31761 2.34512 3.07562 3.70134 3.84550 3.86343 3.88599 3.95964 4.08403 4.16923 4.34201 4.46505 4.60556 4.63976 4.69782 4.71932 4.73674 4.84034 4.87944 4.90143 4.93888 4.97395 4.97839 5.09576 5.10692 5.11645 5.15927 5.21865 5.25696 5.31019 5.40075 5.43578 5.57777 5.58852 5.62976 5.68451 5.78414 6.32704 6.67398 6.75683 7.34719 7.35934 8.88174 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042989 B = 0.003350 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.167133 B = 8357.098033 C = 8528.035115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.088 4.088 6 C -0.136 4.136 7 C 0.505 3.495 8 O -0.590 6.590 9 N -0.714 5.714 10 C 0.147 3.853 11 H 0.074 0.926 12 C -0.122 4.122 13 C -0.126 4.126 14 C 0.006 3.994 15 H 0.029 0.971 16 C -0.509 4.509 17 H 0.040 0.960 18 C 0.015 3.985 19 N -0.950 5.950 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.298 1.298 23 H -0.249 1.249 24 C -0.100 4.100 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.413 0.587 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.059 0.941 43 H 0.264 0.736 44 H 0.072 0.928 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 21.390 -12.964 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.126 4.126 6 C -0.175 4.175 7 C 0.294 3.706 8 O -0.470 6.470 9 N -0.365 5.365 10 C 0.042 3.958 11 H 0.093 0.907 12 C -0.160 4.160 13 C -0.164 4.164 14 C -0.014 4.014 15 H 0.047 0.953 16 C -0.547 4.547 17 H 0.058 0.942 18 C -0.182 4.182 19 N -0.591 5.591 20 Si 0.766 3.234 21 H -0.193 1.193 22 H -0.226 1.226 23 H -0.173 1.173 24 C -0.138 4.138 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.250 0.750 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.170 21.671 -12.328 24.960 hybrid contribution -0.348 -0.610 0.885 1.130 sum 0.822 21.061 -11.443 23.983 Atomic orbital electron populations 1.21961 0.93943 1.02458 1.01903 1.20556 0.96177 0.95476 0.94611 1.21867 1.00850 0.95272 1.01916 1.21955 1.00886 1.00762 0.96620 1.21330 1.00270 0.93380 0.97659 1.21868 1.03818 0.96577 0.95242 1.21476 0.79263 0.81692 0.88207 1.90665 1.40259 1.66867 1.49238 1.46230 1.53082 1.12034 1.25179 1.21476 0.97198 0.92057 0.85051 0.90744 1.22469 0.98998 0.96671 0.97889 1.22678 1.00019 0.94954 0.98779 1.20043 0.94231 0.92613 0.94479 0.95289 1.21277 1.37778 1.00264 0.95382 0.94205 1.25791 0.94650 0.95005 1.02793 1.70034 1.42256 1.14118 1.32691 0.85964 0.80055 0.77846 0.79516 1.19255 1.22571 1.17327 1.22421 1.01253 0.91777 0.98360 0.93126 0.91918 0.91654 0.93019 0.91695 0.93101 0.91621 0.91933 0.93028 0.92975 0.92854 0.86596 0.86751 0.75035 0.92062 0.91229 0.94134 0.92216 0.92653 0.90968 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.12 71.98 0.58 -1.14 16 2 C -0.07 -0.92 0.80 -52.18 -0.04 -0.96 16 3 C -0.14 -1.89 8.47 71.98 0.61 -1.28 16 4 C -0.15 -1.68 8.12 71.98 0.58 -1.10 16 5 C -0.09 -1.62 3.56 30.59 0.11 -1.51 16 6 C -0.14 -2.29 4.99 29.85 0.15 -2.14 16 7 C 0.50 13.15 7.82 87.66 0.69 13.83 16 8 O -0.59 -20.53 15.66 -3.04 -0.05 -20.58 16 9 N -0.71 -18.17 4.99 -439.11 -2.19 -20.36 16 10 C 0.15 4.72 3.23 45.71 0.15 4.86 16 11 H 0.07 2.55 7.60 -2.38 -0.02 2.53 16 12 C -0.12 -4.11 6.59 31.32 0.21 -3.91 16 13 C -0.13 -5.11 5.07 31.67 0.16 -4.95 16 14 C 0.01 0.25 2.30 -10.25 -0.02 0.22 16 15 H 0.03 1.33 7.37 -2.39 -0.02 1.31 16 16 C -0.51 -28.08 9.12 25.60 0.23 -27.84 16 17 H 0.04 2.40 8.03 -2.91 -0.02 2.38 16 18 C 0.01 0.83 5.46 84.66 0.46 1.30 16 19 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 20 Si 0.94 44.67 24.46 68.60 1.68 46.35 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 23 H -0.25 -11.12 6.48 99.48 0.64 -10.48 16 24 C -0.10 -3.59 5.94 31.67 0.19 -3.41 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.69 6.43 -2.39 -0.02 0.67 16 28 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.06 0.67 6.43 -2.39 -0.02 0.65 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 36 H 0.12 1.48 6.43 -2.39 -0.02 1.46 16 37 H 0.11 1.50 6.43 -2.39 -0.02 1.49 16 38 H 0.41 8.30 8.34 -92.71 -0.77 7.52 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 2.18 7.92 -2.39 -0.02 2.16 16 41 H 0.04 1.67 4.91 -2.39 -0.01 1.66 16 42 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 43 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.07 2.52 7.63 -2.39 -0.02 2.50 16 45 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -67.88 342.69 3.91 -63.98 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.11 Total: 17.09 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 4.06 Total: -28.01 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -1.89 Total: -78.84 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.05 Total: -20.58 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.68 Total: 46.35 kcal Total: -67.88 3.91 -63.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452562744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.963 kcal (2) G-P(sol) polarization free energy of solvation -67.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds