Wall clock time and date at job start Mon Mar 30 2020 07:00:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53002 * 109.46952 * 2 1
4 4 C 1.53006 * 109.47095 * 240.00496 * 2 1 3
5 5 C 1.52997 * 109.47643 * 120.00251 * 2 1 3
6 6 C 1.53782 * 113.61411 * 63.54442 * 5 2 1
7 7 C 1.53776 * 87.17361 * 140.02567 * 6 5 2
8 8 C 1.50698 * 113.61226 * 89.07337 * 7 6 5
9 9 O 1.21289 * 120.00165 * 0.02562 * 8 7 6
10 10 N 1.34779 * 120.00220 * 180.02562 * 8 7 6
11 11 C 1.46498 * 120.00193 * 180.02562 * 10 8 7
12 12 C 1.53006 * 109.47072 * 179.97438 * 11 10 8
13 13 C 1.53001 * 109.47135 * 180.02562 * 12 11 10
14 14 C 1.50694 * 109.47071 * 180.02562 * 13 12 11
15 15 H 1.08004 * 120.00261 * 359.97438 * 14 13 12
16 16 C 1.37877 * 120.00306 * 180.02562 * 14 13 12
17 17 N 1.31521 * 119.99651 * 359.97438 * 16 14 13
18 18 Si 1.86796 * 120.00572 * 179.97438 * 16 14 13
19 19 H 1.48506 * 109.46811 * 359.97438 * 18 16 14
20 20 H 1.48503 * 109.47041 * 119.99865 * 18 16 14
21 21 H 1.48499 * 109.47291 * 240.00073 * 18 16 14
22 22 C 1.53779 * 87.08218 * 334.52801 * 7 6 5
23 23 H 1.09002 * 109.46842 * 299.99781 * 1 2 3
24 24 H 1.08993 * 109.47130 * 59.99817 * 1 2 3
25 25 H 1.09001 * 109.46973 * 179.97438 * 1 2 3
26 26 H 1.09005 * 109.46932 * 180.02562 * 3 2 1
27 27 H 1.08998 * 109.46938 * 299.99858 * 3 2 1
28 28 H 1.08994 * 109.47001 * 60.00153 * 3 2 1
29 29 H 1.09004 * 109.46549 * 293.51294 * 4 2 1
30 30 H 1.09000 * 109.46987 * 53.51023 * 4 2 1
31 31 H 1.09002 * 109.47099 * 173.51364 * 4 2 1
32 32 H 1.09001 * 112.90412 * 292.29822 * 5 2 1
33 33 H 1.09005 * 113.61349 * 25.43564 * 6 5 2
34 34 H 1.09004 * 113.61695 * 254.61914 * 6 5 2
35 35 H 1.08993 * 113.61376 * 219.97651 * 7 6 5
36 36 H 0.96998 * 119.99942 * 359.97438 * 10 8 7
37 37 H 1.08994 * 109.47159 * 300.00147 * 11 10 8
38 38 H 1.09005 * 109.46899 * 59.99860 * 11 10 8
39 39 H 1.09000 * 109.46771 * 299.99953 * 12 11 10
40 40 H 1.08994 * 109.46912 * 59.99883 * 12 11 10
41 41 H 1.09002 * 109.46688 * 300.00422 * 13 12 11
42 42 H 1.09005 * 109.47002 * 59.99945 * 13 12 11
43 43 H 0.97000 * 120.00184 * 180.02562 * 17 16 14
44 44 H 1.09004 * 113.61603 * 139.97825 * 22 7 6
45 45 H 1.08999 * 113.61472 * 270.79673 * 22 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2494
5 6 2.0401 -0.7213 1.2491
6 6 1.6537 -2.2088 1.3025
7 6 3.0632 -2.4767 1.8559
8 6 3.1483 -2.3910 3.3581
9 8 2.1576 -2.1312 4.0078
10 7 4.3252 -2.6031 3.9797
11 6 4.4078 -2.5204 5.4400
12 6 5.8440 -2.8014 5.8863
13 6 5.9301 -2.7157 7.4115
14 6 7.3449 -2.9918 7.8511
15 1 8.1064 -3.2074 7.1162
16 6 7.6670 -2.9703 9.1915
17 7 6.7395 -2.7083 10.0865
18 14 9.4204 -3.3133 9.7365
19 1 10.2662 -3.5785 8.5449
20 1 9.9508 -2.1350 10.4683
21 1 9.4382 -4.4998 10.6294
22 6 3.5038 -1.1892 1.1397
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8899
25 1 -0.3633 -1.0277 -0.0005
26 1 3.1300 1.4425 -0.0005
27 1 1.6766 1.9563 -0.8900
28 1 1.6767 1.9563 0.8900
29 1 1.7745 -1.7769 -1.1932
30 1 1.5850 -0.2787 -2.1355
31 1 3.1238 -0.6217 -1.3093
32 1 1.8224 -0.1803 2.1700
33 1 1.4788 -2.6500 0.3212
34 1 0.8567 -2.4277 2.0132
35 1 3.5252 -3.3790 1.4556
36 1 5.1174 -2.8113 3.4601
37 1 4.1148 -1.5220 5.7645
38 1 3.7388 -3.2576 5.8840
39 1 6.1365 -3.8001 5.5618
40 1 6.5132 -2.0646 5.4422
41 1 5.6374 -1.7172 7.7363
42 1 5.2609 -3.4529 7.8552
43 1 6.9661 -2.6928 11.0295
44 1 4.2004 -0.5835 1.7193
45 1 3.8360 -1.3518 0.1144
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000457526727.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:00:26
Heat of formation + Delta-G solvation = -55.903383 kcal
Electronic energy + Delta-G solvation = -20323.374652 eV
Core-core repulsion = 17340.079914 eV
Total energy + Delta-G solvation = -2983.294738 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 267.194 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.82551 -38.52782 -35.49334 -34.80397 -33.28792 -31.19455 -27.78204 -27.64259
-27.31986 -25.71533 -25.38701 -23.19684 -21.49222 -20.63809 -19.40514 -18.41039
-16.64655 -16.47076 -15.96780 -15.54792 -15.09080 -14.88058 -14.48952 -14.41366
-13.95940 -13.74636 -13.23792 -13.02709 -12.66260 -12.36796 -12.29156 -11.96351
-11.88786 -11.78956 -11.74172 -11.55712 -11.31519 -11.09375 -10.92353 -10.73818
-10.59981 -10.56968 -10.21237 -10.09043 -9.87125 -9.78026 -9.33073 -9.09934
-8.74414 -8.38112 -6.02506 -4.05589 2.78949 3.29425 3.36600 3.39208
3.42634 4.32954 4.41756 4.43569 4.48192 4.56923 4.77917 4.86721
4.98308 5.19273 5.32335 5.33323 5.40262 5.41518 5.47652 5.50533
5.63149 5.67475 5.69687 5.72664 5.74905 5.78411 5.84615 5.92711
6.00606 6.04243 6.16123 6.16776 6.19128 6.38712 6.51786 6.60073
6.84732 7.00668 7.63215 7.75631 7.76165 7.96432 8.37055 8.45451
9.01383 9.58693 11.08869
Molecular weight = 267.19amu
Principal moments of inertia in cm(-1)
A = 0.042728 B = 0.002746 C = 0.002718
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 655.154302 B =10193.761945 C =10298.634150
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.060 4.060
3 C -0.141 4.141
4 C -0.146 4.146
5 C -0.097 4.097
6 C -0.117 4.117
7 C -0.141 4.141
8 C 0.525 3.475
9 O -0.543 6.543
10 N -0.724 5.724
11 C 0.116 3.884
12 C -0.120 4.120
13 C 0.023 3.977
14 C -0.521 4.521
15 H 0.056 0.944
16 C 0.056 3.944
17 N -0.894 5.894
18 Si 0.893 3.107
19 H -0.273 1.273
20 H -0.284 1.284
21 H -0.284 1.284
22 C -0.125 4.125
23 H 0.054 0.946
24 H 0.051 0.949
25 H 0.056 0.944
26 H 0.055 0.945
27 H 0.051 0.949
28 H 0.054 0.946
29 H 0.058 0.942
30 H 0.052 0.948
31 H 0.058 0.942
32 H 0.093 0.907
33 H 0.088 0.912
34 H 0.079 0.921
35 H 0.097 0.903
36 H 0.398 0.602
37 H 0.063 0.937
38 H 0.063 0.937
39 H 0.054 0.946
40 H 0.054 0.946
41 H 0.019 0.981
42 H 0.019 0.981
43 H 0.261 0.739
44 H 0.069 0.931
45 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.097 3.723 -23.733 25.688
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.060 4.060
3 C -0.198 4.198
4 C -0.203 4.203
5 C -0.115 4.115
6 C -0.154 4.154
7 C -0.162 4.162
8 C 0.310 3.690
9 O -0.420 6.420
10 N -0.375 5.375
11 C -0.007 4.007
12 C -0.158 4.158
13 C -0.014 4.014
14 C -0.560 4.560
15 H 0.074 0.926
16 C -0.145 4.145
17 N -0.533 5.533
18 Si 0.721 3.279
19 H -0.198 1.198
20 H -0.210 1.210
21 H -0.210 1.210
22 C -0.162 4.162
23 H 0.074 0.926
24 H 0.070 0.930
25 H 0.075 0.925
26 H 0.074 0.926
27 H 0.071 0.929
28 H 0.073 0.927
29 H 0.077 0.923
30 H 0.071 0.929
31 H 0.077 0.923
32 H 0.111 0.889
33 H 0.106 0.894
34 H 0.098 0.902
35 H 0.115 0.885
36 H 0.232 0.768
37 H 0.081 0.919
38 H 0.081 0.919
39 H 0.072 0.928
40 H 0.072 0.928
41 H 0.037 0.963
42 H 0.037 0.963
43 H 0.070 0.930
44 H 0.088 0.912
45 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -9.837 3.931 -23.046 25.364
hybrid contribution 1.428 -0.337 0.279 1.493
sum -8.409 3.594 -22.766 24.534
Atomic orbital electron populations
1.21827 0.94568 1.01839 1.01463 1.20438 0.95545 0.95305 0.94691
1.21845 1.01042 0.95378 1.01519 1.22029 1.01013 1.00479 0.96769
1.22657 0.95241 0.95510 0.98104 1.22890 0.95639 0.96012 1.00896
1.22378 1.00747 1.00587 0.92516 1.20081 0.83250 0.76516 0.89138
1.90683 1.35837 1.48177 1.67320 1.46182 1.10875 1.71438 1.08978
1.21638 0.99536 1.01749 0.77730 1.21882 0.92280 1.00539 1.01126
1.19035 0.97243 0.97614 0.87540 1.21242 0.94830 1.47932 0.91977
0.92598 1.25039 0.97272 0.95326 0.96888 1.69980 1.32794 1.49297
1.01231 0.86525 0.84839 0.77896 0.78661 1.19757 1.20985 1.20990
1.23104 0.97296 0.95060 1.00777 0.92640 0.93006 0.92537 0.92638
0.92943 0.92675 0.92277 0.92938 0.92328 0.88858 0.89416 0.90186
0.88471 0.76830 0.91875 0.91852 0.92754 0.92757 0.96294 0.96286
0.92974 0.91220 0.88639
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.10 8.31 37.16 0.31 -0.79 16
2 C -0.06 -0.48 0.68 -154.50 -0.11 -0.58 16
3 C -0.14 -1.10 8.43 37.16 0.31 -0.79 16
4 C -0.15 -0.98 7.48 37.16 0.28 -0.70 16
5 C -0.10 -0.95 2.70 -89.67 -0.24 -1.19 16
6 C -0.12 -1.17 6.01 -25.92 -0.16 -1.32 16
7 C -0.14 -1.48 4.34 -90.96 -0.40 -1.87 16
8 C 0.52 7.76 7.09 -10.99 -0.08 7.68 16
9 O -0.54 -10.19 15.75 5.55 0.09 -10.11 16
10 N -0.72 -10.49 5.56 -60.29 -0.33 -10.83 16
11 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16
12 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16
13 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16
14 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16
15 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16
16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
17 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16
18 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16
19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16
20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
22 C -0.12 -1.12 6.89 -25.78 -0.18 -1.30 16
23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
25 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16
26 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16
27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16
28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.06 0.38 6.06 -51.93 -0.31 0.07 16
30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16
31 H 0.06 0.37 6.47 -51.93 -0.34 0.04 16
32 H 0.09 1.15 8.07 -51.93 -0.42 0.73 16
33 H 0.09 0.70 6.10 -51.93 -0.32 0.38 16
34 H 0.08 0.97 7.43 -51.93 -0.39 0.59 16
35 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16
36 H 0.40 4.66 8.47 -40.82 -0.35 4.31 16
37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16
40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16
41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
44 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16
45 H 0.10 0.68 5.71 -51.93 -0.30 0.39 16
LS Contribution 353.71 15.07 5.33 5.33
Total: -1.00 -31.71 353.71 -8.43 -40.15
By element:
Atomic # 1 Polarization: 7.72 SS G_CDS: -8.26 Total: -0.54 kcal
Atomic # 6 Polarization: -13.33 SS G_CDS: -0.97 Total: -14.29 kcal
Atomic # 7 Polarization: -37.45 SS G_CDS: 0.40 Total: -37.05 kcal
Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.11 kcal
Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -31.71 -8.43 -40.15 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000457526727.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.757 kcal
(2) G-P(sol) polarization free energy of solvation -31.715 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.472 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.903 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds