Wall clock time and date at job start Mon Mar 30 2020 07:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46952 * 2 1 4 4 C 1.53006 * 109.47095 * 240.00496 * 2 1 3 5 5 C 1.52997 * 109.47643 * 120.00251 * 2 1 3 6 6 C 1.53782 * 113.61411 * 63.54442 * 5 2 1 7 7 C 1.53776 * 87.17361 * 140.02567 * 6 5 2 8 8 C 1.50698 * 113.61226 * 89.07337 * 7 6 5 9 9 O 1.21289 * 120.00165 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00220 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00193 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47072 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47135 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47071 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00261 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00306 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99651 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00572 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46811 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47041 * 119.99865 * 18 16 14 21 21 H 1.48499 * 109.47291 * 240.00073 * 18 16 14 22 22 C 1.53779 * 87.08218 * 334.52801 * 7 6 5 23 23 H 1.09002 * 109.46842 * 299.99781 * 1 2 3 24 24 H 1.08993 * 109.47130 * 59.99817 * 1 2 3 25 25 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46932 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46938 * 299.99858 * 3 2 1 28 28 H 1.08994 * 109.47001 * 60.00153 * 3 2 1 29 29 H 1.09004 * 109.46549 * 293.51294 * 4 2 1 30 30 H 1.09000 * 109.46987 * 53.51023 * 4 2 1 31 31 H 1.09002 * 109.47099 * 173.51364 * 4 2 1 32 32 H 1.09001 * 112.90412 * 292.29822 * 5 2 1 33 33 H 1.09005 * 113.61349 * 25.43564 * 6 5 2 34 34 H 1.09004 * 113.61695 * 254.61914 * 6 5 2 35 35 H 1.08993 * 113.61376 * 219.97651 * 7 6 5 36 36 H 0.96998 * 119.99942 * 359.97438 * 10 8 7 37 37 H 1.08994 * 109.47159 * 300.00147 * 11 10 8 38 38 H 1.09005 * 109.46899 * 59.99860 * 11 10 8 39 39 H 1.09000 * 109.46771 * 299.99953 * 12 11 10 40 40 H 1.08994 * 109.46912 * 59.99883 * 12 11 10 41 41 H 1.09002 * 109.46688 * 300.00422 * 13 12 11 42 42 H 1.09005 * 109.47002 * 59.99945 * 13 12 11 43 43 H 0.97000 * 120.00184 * 180.02562 * 17 16 14 44 44 H 1.09004 * 113.61603 * 139.97825 * 22 7 6 45 45 H 1.08999 * 113.61472 * 270.79673 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2491 6 6 1.6537 -2.2088 1.3025 7 6 3.0632 -2.4767 1.8559 8 6 3.1483 -2.3910 3.3581 9 8 2.1576 -2.1312 4.0078 10 7 4.3252 -2.6031 3.9797 11 6 4.4078 -2.5204 5.4400 12 6 5.8440 -2.8014 5.8863 13 6 5.9301 -2.7157 7.4115 14 6 7.3449 -2.9918 7.8511 15 1 8.1064 -3.2074 7.1162 16 6 7.6670 -2.9703 9.1915 17 7 6.7395 -2.7083 10.0865 18 14 9.4204 -3.3133 9.7365 19 1 10.2662 -3.5785 8.5449 20 1 9.9508 -2.1350 10.4683 21 1 9.4382 -4.4998 10.6294 22 6 3.5038 -1.1892 1.1397 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.7745 -1.7769 -1.1932 30 1 1.5850 -0.2787 -2.1355 31 1 3.1238 -0.6217 -1.3093 32 1 1.8224 -0.1803 2.1700 33 1 1.4788 -2.6500 0.3212 34 1 0.8567 -2.4277 2.0132 35 1 3.5252 -3.3790 1.4556 36 1 5.1174 -2.8113 3.4601 37 1 4.1148 -1.5220 5.7645 38 1 3.7388 -3.2576 5.8840 39 1 6.1365 -3.8001 5.5618 40 1 6.5132 -2.0646 5.4422 41 1 5.6374 -1.7172 7.7363 42 1 5.2609 -3.4529 7.8552 43 1 6.9661 -2.6928 11.0295 44 1 4.2004 -0.5835 1.7193 45 1 3.8360 -1.3518 0.1144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457526727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:26 Heat of formation + Delta-G solvation = -55.903383 kcal Electronic energy + Delta-G solvation = -20323.374652 eV Core-core repulsion = 17340.079914 eV Total energy + Delta-G solvation = -2983.294738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.82551 -38.52782 -35.49334 -34.80397 -33.28792 -31.19455 -27.78204 -27.64259 -27.31986 -25.71533 -25.38701 -23.19684 -21.49222 -20.63809 -19.40514 -18.41039 -16.64655 -16.47076 -15.96780 -15.54792 -15.09080 -14.88058 -14.48952 -14.41366 -13.95940 -13.74636 -13.23792 -13.02709 -12.66260 -12.36796 -12.29156 -11.96351 -11.88786 -11.78956 -11.74172 -11.55712 -11.31519 -11.09375 -10.92353 -10.73818 -10.59981 -10.56968 -10.21237 -10.09043 -9.87125 -9.78026 -9.33073 -9.09934 -8.74414 -8.38112 -6.02506 -4.05589 2.78949 3.29425 3.36600 3.39208 3.42634 4.32954 4.41756 4.43569 4.48192 4.56923 4.77917 4.86721 4.98308 5.19273 5.32335 5.33323 5.40262 5.41518 5.47652 5.50533 5.63149 5.67475 5.69687 5.72664 5.74905 5.78411 5.84615 5.92711 6.00606 6.04243 6.16123 6.16776 6.19128 6.38712 6.51786 6.60073 6.84732 7.00668 7.63215 7.75631 7.76165 7.96432 8.37055 8.45451 9.01383 9.58693 11.08869 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042728 B = 0.002746 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.154302 B =10193.761945 C =10298.634150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.097 4.097 6 C -0.117 4.117 7 C -0.141 4.141 8 C 0.525 3.475 9 O -0.543 6.543 10 N -0.724 5.724 11 C 0.116 3.884 12 C -0.120 4.120 13 C 0.023 3.977 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.125 4.125 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.398 0.602 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.069 0.931 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.097 3.723 -23.733 25.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.060 4.060 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.115 4.115 6 C -0.154 4.154 7 C -0.162 4.162 8 C 0.310 3.690 9 O -0.420 6.420 10 N -0.375 5.375 11 C -0.007 4.007 12 C -0.158 4.158 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.162 4.162 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.232 0.768 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.837 3.931 -23.046 25.364 hybrid contribution 1.428 -0.337 0.279 1.493 sum -8.409 3.594 -22.766 24.534 Atomic orbital electron populations 1.21827 0.94568 1.01839 1.01463 1.20438 0.95545 0.95305 0.94691 1.21845 1.01042 0.95378 1.01519 1.22029 1.01013 1.00479 0.96769 1.22657 0.95241 0.95510 0.98104 1.22890 0.95639 0.96012 1.00896 1.22378 1.00747 1.00587 0.92516 1.20081 0.83250 0.76516 0.89138 1.90683 1.35837 1.48177 1.67320 1.46182 1.10875 1.71438 1.08978 1.21638 0.99536 1.01749 0.77730 1.21882 0.92280 1.00539 1.01126 1.19035 0.97243 0.97614 0.87540 1.21242 0.94830 1.47932 0.91977 0.92598 1.25039 0.97272 0.95326 0.96888 1.69980 1.32794 1.49297 1.01231 0.86525 0.84839 0.77896 0.78661 1.19757 1.20985 1.20990 1.23104 0.97296 0.95060 1.00777 0.92640 0.93006 0.92537 0.92638 0.92943 0.92675 0.92277 0.92938 0.92328 0.88858 0.89416 0.90186 0.88471 0.76830 0.91875 0.91852 0.92754 0.92757 0.96294 0.96286 0.92974 0.91220 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.31 37.16 0.31 -0.79 16 2 C -0.06 -0.48 0.68 -154.50 -0.11 -0.58 16 3 C -0.14 -1.10 8.43 37.16 0.31 -0.79 16 4 C -0.15 -0.98 7.48 37.16 0.28 -0.70 16 5 C -0.10 -0.95 2.70 -89.67 -0.24 -1.19 16 6 C -0.12 -1.17 6.01 -25.92 -0.16 -1.32 16 7 C -0.14 -1.48 4.34 -90.96 -0.40 -1.87 16 8 C 0.52 7.76 7.09 -10.99 -0.08 7.68 16 9 O -0.54 -10.19 15.75 5.55 0.09 -10.11 16 10 N -0.72 -10.49 5.56 -60.29 -0.33 -10.83 16 11 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 12 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 13 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 14 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 18 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.12 -1.12 6.89 -25.78 -0.18 -1.30 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 26 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.38 6.06 -51.93 -0.31 0.07 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.37 6.47 -51.93 -0.34 0.04 16 32 H 0.09 1.15 8.07 -51.93 -0.42 0.73 16 33 H 0.09 0.70 6.10 -51.93 -0.32 0.38 16 34 H 0.08 0.97 7.43 -51.93 -0.39 0.59 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.40 4.66 8.47 -40.82 -0.35 4.31 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 45 H 0.10 0.68 5.71 -51.93 -0.30 0.39 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -31.71 353.71 -8.43 -40.15 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.26 Total: -0.54 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -0.97 Total: -14.29 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.40 Total: -37.05 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.71 -8.43 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457526727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.757 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds