Wall clock time and date at job start Mon Mar 30 2020 07:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46952 * 2 1 4 4 C 1.53006 * 109.47095 * 240.00496 * 2 1 3 5 5 C 1.52997 * 109.47643 * 120.00251 * 2 1 3 6 6 C 1.53782 * 113.61411 * 63.54442 * 5 2 1 7 7 C 1.53776 * 87.17361 * 140.02567 * 6 5 2 8 8 C 1.50698 * 113.61226 * 89.07337 * 7 6 5 9 9 O 1.21289 * 120.00165 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00220 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00193 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47072 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47135 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47071 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00261 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00306 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99651 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00572 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46811 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47041 * 119.99865 * 18 16 14 21 21 H 1.48499 * 109.47291 * 240.00073 * 18 16 14 22 22 C 1.53779 * 87.08218 * 334.52801 * 7 6 5 23 23 H 1.09002 * 109.46842 * 299.99781 * 1 2 3 24 24 H 1.08993 * 109.47130 * 59.99817 * 1 2 3 25 25 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46932 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46938 * 299.99858 * 3 2 1 28 28 H 1.08994 * 109.47001 * 60.00153 * 3 2 1 29 29 H 1.09004 * 109.46549 * 293.51294 * 4 2 1 30 30 H 1.09000 * 109.46987 * 53.51023 * 4 2 1 31 31 H 1.09002 * 109.47099 * 173.51364 * 4 2 1 32 32 H 1.09001 * 112.90412 * 292.29822 * 5 2 1 33 33 H 1.09005 * 113.61349 * 25.43564 * 6 5 2 34 34 H 1.09004 * 113.61695 * 254.61914 * 6 5 2 35 35 H 1.08993 * 113.61376 * 219.97651 * 7 6 5 36 36 H 0.96998 * 119.99942 * 359.97438 * 10 8 7 37 37 H 1.08994 * 109.47159 * 300.00147 * 11 10 8 38 38 H 1.09005 * 109.46899 * 59.99860 * 11 10 8 39 39 H 1.09000 * 109.46771 * 299.99953 * 12 11 10 40 40 H 1.08994 * 109.46912 * 59.99883 * 12 11 10 41 41 H 1.09002 * 109.46688 * 300.00422 * 13 12 11 42 42 H 1.09005 * 109.47002 * 59.99945 * 13 12 11 43 43 H 0.97000 * 120.00184 * 180.02562 * 17 16 14 44 44 H 1.09004 * 113.61603 * 139.97825 * 22 7 6 45 45 H 1.08999 * 113.61472 * 270.79673 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2491 6 6 1.6537 -2.2088 1.3025 7 6 3.0632 -2.4767 1.8559 8 6 3.1483 -2.3910 3.3581 9 8 2.1576 -2.1312 4.0078 10 7 4.3252 -2.6031 3.9797 11 6 4.4078 -2.5204 5.4400 12 6 5.8440 -2.8014 5.8863 13 6 5.9301 -2.7157 7.4115 14 6 7.3449 -2.9918 7.8511 15 1 8.1064 -3.2074 7.1162 16 6 7.6670 -2.9703 9.1915 17 7 6.7395 -2.7083 10.0865 18 14 9.4204 -3.3133 9.7365 19 1 10.2662 -3.5785 8.5449 20 1 9.9508 -2.1350 10.4683 21 1 9.4382 -4.4998 10.6294 22 6 3.5038 -1.1892 1.1397 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.7745 -1.7769 -1.1932 30 1 1.5850 -0.2787 -2.1355 31 1 3.1238 -0.6217 -1.3093 32 1 1.8224 -0.1803 2.1700 33 1 1.4788 -2.6500 0.3212 34 1 0.8567 -2.4277 2.0132 35 1 3.5252 -3.3790 1.4556 36 1 5.1174 -2.8113 3.4601 37 1 4.1148 -1.5220 5.7645 38 1 3.7388 -3.2576 5.8840 39 1 6.1365 -3.8001 5.5618 40 1 6.5132 -2.0646 5.4422 41 1 5.6374 -1.7172 7.7363 42 1 5.2609 -3.4529 7.8552 43 1 6.9661 -2.6928 11.0295 44 1 4.2004 -0.5835 1.7193 45 1 3.8360 -1.3518 0.1144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457526727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:25 Heat of formation + Delta-G solvation = -74.684389 kcal Electronic energy + Delta-G solvation = -20324.189058 eV Core-core repulsion = 17340.079914 eV Total energy + Delta-G solvation = -2984.109143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76729 -39.58609 -36.98697 -35.64596 -35.19410 -33.01381 -29.03318 -28.41511 -28.11995 -26.93098 -26.16181 -24.86622 -22.61848 -22.33003 -20.44541 -19.28326 -18.54533 -17.61407 -16.97479 -16.85390 -16.46206 -16.30152 -15.84729 -15.30782 -14.92611 -14.89629 -14.33015 -14.13033 -13.78362 -13.69848 -13.59297 -13.31441 -13.02132 -12.78943 -12.57615 -12.57306 -12.47128 -12.36565 -12.29354 -12.04653 -11.77084 -11.70004 -11.59583 -11.33576 -11.22100 -10.94990 -10.80763 -10.68076 -10.57792 -10.09835 -8.21036 -6.32809 1.41071 1.41309 1.54688 1.61563 2.20912 2.41928 3.12788 3.56042 3.65491 3.69337 3.80090 3.98507 4.12077 4.18016 4.18637 4.35306 4.44693 4.52382 4.63186 4.76107 4.78095 4.84526 4.86435 4.91334 4.93608 4.98770 5.00821 5.08818 5.10796 5.14506 5.18767 5.26269 5.28797 5.41161 5.44053 5.49795 5.51922 5.55532 5.68107 5.69958 5.82327 6.20411 6.60366 6.85048 7.28294 7.37090 8.91466 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042728 B = 0.002746 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.154302 B =10193.761945 C =10298.634150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.101 4.101 6 C -0.113 4.113 7 C -0.137 4.137 8 C 0.519 3.481 9 O -0.590 6.590 10 N -0.714 5.714 11 C 0.129 3.871 12 C -0.100 4.100 13 C 0.023 3.977 14 C -0.540 4.540 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.112 4.112 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.117 0.883 34 H 0.051 0.949 35 H 0.129 0.871 36 H 0.416 0.584 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.068 0.932 41 H -0.010 1.010 42 H -0.009 1.009 43 H 0.263 0.737 44 H 0.061 0.939 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.249 3.022 -26.690 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.057 4.057 3 C -0.198 4.198 4 C -0.200 4.200 5 C -0.119 4.119 6 C -0.151 4.151 7 C -0.158 4.158 8 C 0.307 3.693 9 O -0.470 6.470 10 N -0.365 5.365 11 C 0.005 3.995 12 C -0.138 4.138 13 C -0.015 4.015 14 C -0.578 4.578 15 H 0.086 0.914 16 C -0.202 4.202 17 N -0.577 5.577 18 Si 0.793 3.207 19 H -0.181 1.181 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.149 4.149 23 H 0.058 0.942 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.069 0.931 35 H 0.147 0.853 36 H 0.253 0.747 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.009 0.991 42 H 0.009 0.991 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.965 3.223 -26.045 27.425 hybrid contribution 0.772 -0.086 1.228 1.452 sum -7.193 3.138 -24.817 26.028 Atomic orbital electron populations 1.21838 0.94798 1.01845 1.01288 1.20423 0.95388 0.95308 0.94568 1.21850 1.01203 0.95395 1.01364 1.22014 1.01556 1.00612 0.95863 1.22578 0.96396 0.95402 0.97552 1.22937 0.94418 0.96199 1.01497 1.22384 1.01678 1.02834 0.88926 1.20937 0.82250 0.74999 0.91090 1.90668 1.37452 1.50119 1.68805 1.45976 1.11901 1.71242 1.07394 1.21206 0.98018 1.00184 0.80074 1.21586 0.93530 1.01832 0.96863 1.18952 0.95907 0.94996 0.91621 1.21707 0.95906 1.47570 0.92586 0.91448 1.26056 1.02096 0.94994 0.97100 1.70126 1.35391 1.50474 1.01691 0.85341 0.79075 0.77722 0.78548 1.18092 1.20551 1.20553 1.23140 0.96273 0.93508 1.01974 0.94223 0.91782 0.92452 0.92346 0.91810 0.94147 0.91608 0.92133 0.91447 0.92529 0.86481 0.93053 0.85279 0.74736 0.93664 0.93512 0.91268 0.91339 0.99117 0.99065 0.92795 0.92030 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.31 71.98 0.60 -1.49 16 2 C -0.06 -0.82 0.68 -52.18 -0.04 -0.85 16 3 C -0.14 -2.04 8.43 71.98 0.61 -1.43 16 4 C -0.14 -1.42 7.48 71.98 0.54 -0.88 16 5 C -0.10 -1.90 2.70 -10.18 -0.03 -1.93 16 6 C -0.11 -2.10 6.01 31.12 0.19 -1.92 16 7 C -0.14 -2.58 4.34 -11.02 -0.05 -2.63 16 8 C 0.52 15.21 7.09 87.66 0.62 15.84 16 9 O -0.59 -23.06 15.75 -3.06 -0.05 -23.11 16 10 N -0.71 -20.05 5.56 -463.05 -2.57 -22.62 16 11 C 0.13 4.72 5.67 86.38 0.49 5.21 16 12 C -0.10 -3.91 5.27 30.60 0.16 -3.75 16 13 C 0.02 1.21 4.97 29.85 0.15 1.36 16 14 C -0.54 -30.32 9.11 25.60 0.23 -30.08 16 15 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 16 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 17 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16 18 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 C -0.11 -1.73 6.89 31.21 0.22 -1.51 16 23 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.83 7.56 -2.39 -0.02 0.81 16 26 H 0.06 0.80 8.12 -2.38 -0.02 0.78 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.58 6.06 -2.38 -0.01 0.56 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.57 6.47 -2.39 -0.02 0.55 16 32 H 0.06 1.49 8.07 -2.39 -0.02 1.47 16 33 H 0.12 1.49 6.10 -2.38 -0.01 1.48 16 34 H 0.05 1.27 7.43 -2.38 -0.02 1.25 16 35 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.42 8.73 8.47 -92.71 -0.79 7.94 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 42 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 43 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.06 1.09 8.09 -2.38 -0.02 1.07 16 45 H 0.13 1.24 5.71 -2.39 -0.01 1.22 16 Total: -1.00 -71.15 353.71 4.00 -67.15 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.16 Total: 13.95 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 4.15 Total: -23.91 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -2.29 Total: -80.04 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.15 4.00 -67.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457526727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.537 kcal (2) G-P(sol) polarization free energy of solvation -71.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds