Wall clock time and date at job start Mon Mar 30 2020 07:00:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53002 * 109.46952 * 2 1
4 4 C 1.53006 * 109.47095 * 240.00496 * 2 1 3
5 5 C 1.52997 * 109.47643 * 120.00251 * 2 1 3
6 6 C 1.53782 * 113.61411 * 63.54442 * 5 2 1
7 7 C 1.53776 * 87.17361 * 140.02567 * 6 5 2
8 8 C 1.50698 * 113.61226 * 89.07337 * 7 6 5
9 9 O 1.21289 * 120.00165 * 0.02562 * 8 7 6
10 10 N 1.34779 * 120.00220 * 180.02562 * 8 7 6
11 11 C 1.46498 * 120.00193 * 180.02562 * 10 8 7
12 12 C 1.53006 * 109.47072 * 179.97438 * 11 10 8
13 13 C 1.53001 * 109.47135 * 180.02562 * 12 11 10
14 14 C 1.50694 * 109.47071 * 180.02562 * 13 12 11
15 15 H 1.08004 * 120.00261 * 359.97438 * 14 13 12
16 16 C 1.37877 * 120.00306 * 180.02562 * 14 13 12
17 17 N 1.31521 * 119.99651 * 359.97438 * 16 14 13
18 18 Si 1.86796 * 120.00572 * 179.97438 * 16 14 13
19 19 H 1.48506 * 109.46811 * 359.97438 * 18 16 14
20 20 H 1.48503 * 109.47041 * 119.99865 * 18 16 14
21 21 H 1.48499 * 109.47291 * 240.00073 * 18 16 14
22 22 C 1.53779 * 87.08218 * 334.52801 * 7 6 5
23 23 H 1.09002 * 109.46842 * 299.99781 * 1 2 3
24 24 H 1.08993 * 109.47130 * 59.99817 * 1 2 3
25 25 H 1.09001 * 109.46973 * 179.97438 * 1 2 3
26 26 H 1.09005 * 109.46932 * 180.02562 * 3 2 1
27 27 H 1.08998 * 109.46938 * 299.99858 * 3 2 1
28 28 H 1.08994 * 109.47001 * 60.00153 * 3 2 1
29 29 H 1.09004 * 109.46549 * 293.51294 * 4 2 1
30 30 H 1.09000 * 109.46987 * 53.51023 * 4 2 1
31 31 H 1.09002 * 109.47099 * 173.51364 * 4 2 1
32 32 H 1.09001 * 112.90412 * 292.29822 * 5 2 1
33 33 H 1.09005 * 113.61349 * 25.43564 * 6 5 2
34 34 H 1.09004 * 113.61695 * 254.61914 * 6 5 2
35 35 H 1.08993 * 113.61376 * 219.97651 * 7 6 5
36 36 H 0.96998 * 119.99942 * 359.97438 * 10 8 7
37 37 H 1.08994 * 109.47159 * 300.00147 * 11 10 8
38 38 H 1.09005 * 109.46899 * 59.99860 * 11 10 8
39 39 H 1.09000 * 109.46771 * 299.99953 * 12 11 10
40 40 H 1.08994 * 109.46912 * 59.99883 * 12 11 10
41 41 H 1.09002 * 109.46688 * 300.00422 * 13 12 11
42 42 H 1.09005 * 109.47002 * 59.99945 * 13 12 11
43 43 H 0.97000 * 120.00184 * 180.02562 * 17 16 14
44 44 H 1.09004 * 113.61603 * 139.97825 * 22 7 6
45 45 H 1.08999 * 113.61472 * 270.79673 * 22 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2494
5 6 2.0401 -0.7213 1.2491
6 6 1.6537 -2.2088 1.3025
7 6 3.0632 -2.4767 1.8559
8 6 3.1483 -2.3910 3.3581
9 8 2.1576 -2.1312 4.0078
10 7 4.3252 -2.6031 3.9797
11 6 4.4078 -2.5204 5.4400
12 6 5.8440 -2.8014 5.8863
13 6 5.9301 -2.7157 7.4115
14 6 7.3449 -2.9918 7.8511
15 1 8.1064 -3.2074 7.1162
16 6 7.6670 -2.9703 9.1915
17 7 6.7395 -2.7083 10.0865
18 14 9.4204 -3.3133 9.7365
19 1 10.2662 -3.5785 8.5449
20 1 9.9508 -2.1350 10.4683
21 1 9.4382 -4.4998 10.6294
22 6 3.5038 -1.1892 1.1397
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8899
25 1 -0.3633 -1.0277 -0.0005
26 1 3.1300 1.4425 -0.0005
27 1 1.6766 1.9563 -0.8900
28 1 1.6767 1.9563 0.8900
29 1 1.7745 -1.7769 -1.1932
30 1 1.5850 -0.2787 -2.1355
31 1 3.1238 -0.6217 -1.3093
32 1 1.8224 -0.1803 2.1700
33 1 1.4788 -2.6500 0.3212
34 1 0.8567 -2.4277 2.0132
35 1 3.5252 -3.3790 1.4556
36 1 5.1174 -2.8113 3.4601
37 1 4.1148 -1.5220 5.7645
38 1 3.7388 -3.2576 5.8840
39 1 6.1365 -3.8001 5.5618
40 1 6.5132 -2.0646 5.4422
41 1 5.6374 -1.7172 7.7363
42 1 5.2609 -3.4529 7.8552
43 1 6.9661 -2.6928 11.0295
44 1 4.2004 -0.5835 1.7193
45 1 3.8360 -1.3518 0.1144
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000457526727.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:00:25
Heat of formation + Delta-G solvation = -74.684389 kcal
Electronic energy + Delta-G solvation = -20324.189058 eV
Core-core repulsion = 17340.079914 eV
Total energy + Delta-G solvation = -2984.109143 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 267.194 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.76729 -39.58609 -36.98697 -35.64596 -35.19410 -33.01381 -29.03318 -28.41511
-28.11995 -26.93098 -26.16181 -24.86622 -22.61848 -22.33003 -20.44541 -19.28326
-18.54533 -17.61407 -16.97479 -16.85390 -16.46206 -16.30152 -15.84729 -15.30782
-14.92611 -14.89629 -14.33015 -14.13033 -13.78362 -13.69848 -13.59297 -13.31441
-13.02132 -12.78943 -12.57615 -12.57306 -12.47128 -12.36565 -12.29354 -12.04653
-11.77084 -11.70004 -11.59583 -11.33576 -11.22100 -10.94990 -10.80763 -10.68076
-10.57792 -10.09835 -8.21036 -6.32809 1.41071 1.41309 1.54688 1.61563
2.20912 2.41928 3.12788 3.56042 3.65491 3.69337 3.80090 3.98507
4.12077 4.18016 4.18637 4.35306 4.44693 4.52382 4.63186 4.76107
4.78095 4.84526 4.86435 4.91334 4.93608 4.98770 5.00821 5.08818
5.10796 5.14506 5.18767 5.26269 5.28797 5.41161 5.44053 5.49795
5.51922 5.55532 5.68107 5.69958 5.82327 6.20411 6.60366 6.85048
7.28294 7.37090 8.91466
Molecular weight = 267.19amu
Principal moments of inertia in cm(-1)
A = 0.042728 B = 0.002746 C = 0.002718
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 655.154302 B =10193.761945 C =10298.634150
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.057 4.057
3 C -0.141 4.141
4 C -0.144 4.144
5 C -0.101 4.101
6 C -0.113 4.113
7 C -0.137 4.137
8 C 0.519 3.481
9 O -0.590 6.590
10 N -0.714 5.714
11 C 0.129 3.871
12 C -0.100 4.100
13 C 0.023 3.977
14 C -0.540 4.540
15 H 0.067 0.933
16 C -0.005 4.005
17 N -0.936 5.936
18 Si 0.969 3.031
19 H -0.257 1.257
20 H -0.280 1.280
21 H -0.280 1.280
22 C -0.112 4.112
23 H 0.039 0.961
24 H 0.063 0.937
25 H 0.056 0.944
26 H 0.057 0.943
27 H 0.063 0.937
28 H 0.039 0.961
29 H 0.065 0.935
30 H 0.060 0.940
31 H 0.067 0.933
32 H 0.056 0.944
33 H 0.117 0.883
34 H 0.051 0.949
35 H 0.129 0.871
36 H 0.416 0.584
37 H 0.045 0.955
38 H 0.046 0.954
39 H 0.069 0.931
40 H 0.068 0.932
41 H -0.010 1.010
42 H -0.009 1.009
43 H 0.263 0.737
44 H 0.061 0.939
45 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.249 3.022 -26.690 27.821
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.057 4.057
3 C -0.198 4.198
4 C -0.200 4.200
5 C -0.119 4.119
6 C -0.151 4.151
7 C -0.158 4.158
8 C 0.307 3.693
9 O -0.470 6.470
10 N -0.365 5.365
11 C 0.005 3.995
12 C -0.138 4.138
13 C -0.015 4.015
14 C -0.578 4.578
15 H 0.086 0.914
16 C -0.202 4.202
17 N -0.577 5.577
18 Si 0.793 3.207
19 H -0.181 1.181
20 H -0.206 1.206
21 H -0.206 1.206
22 C -0.149 4.149
23 H 0.058 0.942
24 H 0.082 0.918
25 H 0.075 0.925
26 H 0.077 0.923
27 H 0.082 0.918
28 H 0.059 0.941
29 H 0.084 0.916
30 H 0.079 0.921
31 H 0.086 0.914
32 H 0.075 0.925
33 H 0.135 0.865
34 H 0.069 0.931
35 H 0.147 0.853
36 H 0.253 0.747
37 H 0.063 0.937
38 H 0.065 0.935
39 H 0.087 0.913
40 H 0.087 0.913
41 H 0.009 0.991
42 H 0.009 0.991
43 H 0.072 0.928
44 H 0.080 0.920
45 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -7.965 3.223 -26.045 27.425
hybrid contribution 0.772 -0.086 1.228 1.452
sum -7.193 3.138 -24.817 26.028
Atomic orbital electron populations
1.21838 0.94798 1.01845 1.01288 1.20423 0.95388 0.95308 0.94568
1.21850 1.01203 0.95395 1.01364 1.22014 1.01556 1.00612 0.95863
1.22578 0.96396 0.95402 0.97552 1.22937 0.94418 0.96199 1.01497
1.22384 1.01678 1.02834 0.88926 1.20937 0.82250 0.74999 0.91090
1.90668 1.37452 1.50119 1.68805 1.45976 1.11901 1.71242 1.07394
1.21206 0.98018 1.00184 0.80074 1.21586 0.93530 1.01832 0.96863
1.18952 0.95907 0.94996 0.91621 1.21707 0.95906 1.47570 0.92586
0.91448 1.26056 1.02096 0.94994 0.97100 1.70126 1.35391 1.50474
1.01691 0.85341 0.79075 0.77722 0.78548 1.18092 1.20551 1.20553
1.23140 0.96273 0.93508 1.01974 0.94223 0.91782 0.92452 0.92346
0.91810 0.94147 0.91608 0.92133 0.91447 0.92529 0.86481 0.93053
0.85279 0.74736 0.93664 0.93512 0.91268 0.91339 0.99117 0.99065
0.92795 0.92030 0.85542
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.09 8.31 71.98 0.60 -1.49 16
2 C -0.06 -0.82 0.68 -52.18 -0.04 -0.85 16
3 C -0.14 -2.04 8.43 71.98 0.61 -1.43 16
4 C -0.14 -1.42 7.48 71.98 0.54 -0.88 16
5 C -0.10 -1.90 2.70 -10.18 -0.03 -1.93 16
6 C -0.11 -2.10 6.01 31.12 0.19 -1.92 16
7 C -0.14 -2.58 4.34 -11.02 -0.05 -2.63 16
8 C 0.52 15.21 7.09 87.66 0.62 15.84 16
9 O -0.59 -23.06 15.75 -3.06 -0.05 -23.11 16
10 N -0.71 -20.05 5.56 -463.05 -2.57 -22.62 16
11 C 0.13 4.72 5.67 86.38 0.49 5.21 16
12 C -0.10 -3.91 5.27 30.60 0.16 -3.75 16
13 C 0.02 1.21 4.97 29.85 0.15 1.36 16
14 C -0.54 -30.32 9.11 25.60 0.23 -30.08 16
15 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16
16 C -0.01 -0.29 5.46 84.65 0.46 0.18 16
17 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16
18 Si 0.97 43.94 29.54 68.60 2.03 45.97 16
19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16
20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16
21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16
22 C -0.11 -1.73 6.89 31.21 0.22 -1.51 16
23 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16
24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
25 H 0.06 0.83 7.56 -2.39 -0.02 0.81 16
26 H 0.06 0.80 8.12 -2.38 -0.02 0.78 16
27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16
29 H 0.07 0.58 6.06 -2.38 -0.01 0.56 16
30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16
31 H 0.07 0.57 6.47 -2.39 -0.02 0.55 16
32 H 0.06 1.49 8.07 -2.39 -0.02 1.47 16
33 H 0.12 1.49 6.10 -2.38 -0.01 1.48 16
34 H 0.05 1.27 7.43 -2.38 -0.02 1.25 16
35 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16
36 H 0.42 8.73 8.47 -92.71 -0.79 7.94 16
37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16
38 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16
39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16
40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16
41 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16
42 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16
43 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16
44 H 0.06 1.09 8.09 -2.38 -0.02 1.07 16
45 H 0.13 1.24 5.71 -2.39 -0.01 1.22 16
Total: -1.00 -71.15 353.71 4.00 -67.15
By element:
Atomic # 1 Polarization: 13.79 SS G_CDS: 0.16 Total: 13.95 kcal
Atomic # 6 Polarization: -28.06 SS G_CDS: 4.15 Total: -23.91 kcal
Atomic # 7 Polarization: -77.76 SS G_CDS: -2.29 Total: -80.04 kcal
Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal
Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal
Total: -71.15 4.00 -67.15 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000457526727.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.537 kcal
(2) G-P(sol) polarization free energy of solvation -71.147 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.684 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.148 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.684 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds