Wall clock time and date at job start Mon Mar 30 2020 07:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47382 * 2 1 4 4 C 1.52999 * 109.46979 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46963 * 299.99975 * 3 2 1 6 6 C 1.52995 * 109.47157 * 299.99793 * 5 3 2 7 7 C 1.50695 * 109.47170 * 59.99817 * 3 2 1 8 8 O 1.21280 * 120.00331 * 239.99867 * 7 3 2 9 9 N 1.34776 * 119.99936 * 60.00013 * 7 3 2 10 10 C 1.46503 * 120.00122 * 180.02562 * 9 7 3 11 11 H 1.09006 * 110.43216 * 323.91118 * 10 9 7 12 12 C 1.54268 * 110.48773 * 86.44967 * 10 9 7 13 13 C 1.53880 * 106.59650 * 142.28933 * 12 10 9 14 14 C 1.54265 * 106.59959 * 0.02562 * 13 12 10 15 15 H 1.09003 * 110.48675 * 95.20047 * 14 13 12 16 16 C 1.50701 * 110.49026 * 217.70987 * 14 13 12 17 17 H 1.08002 * 119.99761 * 118.54174 * 16 14 13 18 18 C 1.37871 * 119.99694 * 298.82737 * 16 14 13 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 14 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 14 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 C 1.54887 * 104.19682 * 336.39067 * 14 13 12 25 25 H 1.09003 * 109.46641 * 59.99694 * 1 2 3 26 26 H 1.08993 * 109.47475 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47192 * 300.00469 * 1 2 3 28 28 H 1.09007 * 109.46778 * 239.99643 * 2 1 3 29 29 H 1.09003 * 109.46641 * 120.00306 * 2 1 3 30 30 H 1.08996 * 109.47568 * 299.99958 * 4 3 2 31 31 H 1.09003 * 109.47157 * 60.00177 * 4 3 2 32 32 H 1.09004 * 109.46681 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.47350 * 60.00018 * 5 3 2 34 34 H 1.09002 * 109.46781 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47249 * 60.00017 * 6 5 3 36 36 H 1.09004 * 109.47295 * 180.02562 * 6 5 3 37 37 H 1.09003 * 109.47326 * 300.00590 * 6 5 3 38 38 H 0.96993 * 120.00174 * 359.97438 * 9 7 3 39 39 H 1.09002 * 110.03123 * 23.00825 * 12 10 9 40 40 H 1.08997 * 110.07468 * 261.59459 * 12 10 9 41 41 H 1.09001 * 110.03328 * 240.71486 * 13 12 10 42 42 H 1.08996 * 110.03144 * 119.28542 * 13 12 10 43 43 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 44 44 H 1.09006 * 110.75769 * 156.25769 * 24 14 13 45 45 H 1.08997 * 110.75812 * 279.62568 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 6 1.5301 2.1637 -1.2493 6 6 2.0401 1.4425 -2.4985 7 6 1.5378 2.1529 1.2304 8 8 0.8406 3.1390 1.1192 9 7 1.8633 1.6924 2.4545 10 6 1.3746 2.3827 3.6507 11 1 1.3495 3.4598 3.4850 12 6 -0.0251 1.8636 4.0396 13 6 -0.0650 1.8169 5.5772 14 6 1.3116 2.3098 6.0689 15 1 1.2759 3.3748 6.2982 16 6 1.7515 1.5257 7.2784 17 1 2.6565 0.9375 7.2408 18 6 0.9954 1.5547 8.4310 19 7 1.3764 0.8660 9.4848 20 14 -0.5699 2.5720 8.4960 21 1 -1.7196 1.7399 8.0589 22 1 -0.7984 3.0406 9.8865 23 1 -0.4362 3.7443 7.5943 24 6 2.2602 2.0411 4.8744 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9331 0.9287 0.8908 31 1 3.9338 0.9284 -0.8891 32 1 3.9334 2.4700 0.0011 33 1 0.4402 2.1638 -1.2493 34 1 1.8939 3.1912 -1.2495 35 1 1.6768 0.4148 -2.4985 36 1 1.6772 1.9566 -3.3885 37 1 3.1301 1.4424 -2.4984 38 1 2.4206 0.9036 2.5436 39 1 -0.1796 0.8648 3.6316 40 1 -0.7926 2.5418 3.6667 41 1 -0.2388 0.7953 5.9153 42 1 -0.8512 2.4730 5.9504 43 1 0.8447 0.8867 10.2958 44 1 3.1302 2.6966 4.9169 45 1 2.5644 0.9948 4.8504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590771927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:58 Heat of formation + Delta-G solvation = -72.280784 kcal Electronic energy + Delta-G solvation = -21568.956838 eV Core-core repulsion = 18584.951923 eV Total energy + Delta-G solvation = -2984.004915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.42093 -37.80712 -36.40516 -33.80782 -32.13738 -31.38934 -29.93003 -28.45174 -27.50400 -25.26590 -23.61164 -23.45886 -21.71234 -20.05383 -19.38527 -18.50956 -16.94015 -16.57712 -15.87553 -15.59789 -15.08741 -14.99471 -14.45179 -13.95969 -13.74193 -13.27305 -13.06657 -12.89891 -12.66892 -12.49309 -12.31812 -12.26329 -12.06764 -11.78391 -11.61939 -11.41297 -11.16843 -10.99036 -10.91999 -10.61910 -10.54820 -10.45004 -10.10070 -10.05745 -9.77357 -9.50252 -9.36149 -8.98701 -8.67851 -8.54070 -6.07806 -4.06855 2.83761 3.30411 3.38244 3.40889 3.42011 4.42797 4.45691 4.55383 4.67520 4.97669 5.05066 5.19586 5.19986 5.23935 5.33874 5.36029 5.44534 5.47947 5.52944 5.60271 5.64049 5.69386 5.78385 5.80971 5.95583 5.98431 6.06522 6.11331 6.13215 6.16860 6.28632 6.33652 6.46725 6.48475 6.62015 6.71600 6.88805 7.01289 7.11031 7.51921 7.74435 7.80213 8.44981 8.51871 8.95198 9.55390 11.05347 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037791 B = 0.004241 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.742874 B = 6600.065694 C = 6739.213757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 C -0.081 4.081 4 C -0.143 4.143 5 C -0.101 4.101 6 C -0.155 4.155 7 C 0.522 3.478 8 O -0.546 6.546 9 N -0.718 5.718 10 C 0.135 3.865 11 H 0.085 0.915 12 C -0.127 4.127 13 C -0.132 4.132 14 C 0.015 3.985 15 H 0.033 0.967 16 C -0.510 4.510 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.278 1.278 22 H -0.295 1.295 23 H -0.264 1.264 24 C -0.108 4.108 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.397 0.603 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.263 0.737 44 H 0.058 0.942 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.694 -1.501 -21.356 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.150 4.150 3 C -0.084 4.084 4 C -0.201 4.201 5 C -0.139 4.139 6 C -0.212 4.212 7 C 0.308 3.692 8 O -0.423 6.423 9 N -0.367 5.367 10 C 0.031 3.969 11 H 0.103 0.897 12 C -0.166 4.166 13 C -0.170 4.170 14 C -0.005 4.005 15 H 0.051 0.949 16 C -0.548 4.548 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.541 5.541 20 Si 0.709 3.291 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.189 1.189 24 C -0.146 4.146 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.232 0.768 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.142 -0.830 -21.231 21.278 hybrid contribution -0.707 0.060 0.329 0.782 sum 0.436 -0.769 -20.902 20.921 Atomic orbital electron populations 1.21870 0.95367 1.01752 1.02553 1.21626 0.96607 0.93977 1.02777 1.20889 0.96971 0.96460 0.94063 1.21912 0.92755 1.02697 1.02690 1.21373 1.01538 0.99048 0.91910 1.21918 1.01279 1.00681 0.97364 1.20465 0.79885 0.84267 0.84612 1.90669 1.38112 1.26647 1.86854 1.46201 1.53117 1.31737 1.05689 1.22051 0.94482 0.96835 0.83566 0.89706 1.22485 0.96334 1.00268 0.97503 1.22640 0.99853 1.01732 0.92760 1.19897 0.90205 0.96955 0.93400 0.94885 1.20997 1.10286 1.28741 0.94770 0.90836 1.24989 0.97640 0.94934 0.95496 1.69904 1.39387 1.41585 1.03231 0.86924 0.84155 0.81524 0.76537 1.20361 1.22152 1.18910 1.22670 0.97620 1.01083 0.93245 0.92191 0.92515 0.92437 0.90663 0.91480 0.92035 0.91230 0.92074 0.90996 0.91466 0.92394 0.92747 0.92449 0.76843 0.92365 0.92724 0.91291 0.93863 0.92700 0.92296 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.31 37.16 0.35 -1.26 16 2 C -0.11 -1.01 4.54 -26.73 -0.12 -1.13 16 3 C -0.08 -0.84 0.43 -155.66 -0.07 -0.90 16 4 C -0.14 -1.24 8.02 37.16 0.30 -0.94 16 5 C -0.10 -1.04 3.93 -26.73 -0.10 -1.14 16 6 C -0.16 -1.18 9.21 37.15 0.34 -0.84 16 7 C 0.52 7.46 5.21 -10.99 -0.06 7.40 16 8 O -0.55 -9.92 15.69 5.56 0.09 -9.83 16 9 N -0.72 -10.06 4.90 -52.21 -0.26 -10.32 16 10 C 0.13 2.30 3.16 -66.28 -0.21 2.09 16 11 H 0.08 1.56 7.66 -51.93 -0.40 1.16 16 12 C -0.13 -2.30 6.53 -25.61 -0.17 -2.47 16 13 C -0.13 -2.80 4.64 -25.61 -0.12 -2.92 16 14 C 0.01 0.34 2.30 -90.11 -0.21 0.13 16 15 H 0.03 0.78 7.32 -51.93 -0.38 0.40 16 16 C -0.51 -13.96 8.98 -34.44 -0.31 -14.27 16 17 H 0.07 2.16 8.02 -52.49 -0.42 1.74 16 18 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 19 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 20 Si 0.88 21.80 24.66 -169.99 -4.19 17.61 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.26 -6.32 6.37 56.52 0.36 -5.96 16 24 C -0.11 -2.02 5.88 -24.75 -0.15 -2.17 16 25 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.72 7.22 -51.93 -0.37 0.35 16 28 H 0.07 0.55 6.43 -51.92 -0.33 0.22 16 29 H 0.07 0.58 7.56 -51.93 -0.39 0.19 16 30 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 31 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.82 6.39 -51.93 -0.33 0.49 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 38 H 0.40 4.68 7.37 -40.82 -0.30 4.38 16 39 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.54 7.82 -51.93 -0.41 1.14 16 42 H 0.04 0.93 5.73 -51.93 -0.30 0.63 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -31.08 335.26 -7.06 -38.14 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.90 Total: 2.45 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -0.62 Total: -16.50 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.52 Total: -36.93 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.19 Total: 17.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.08 -7.06 -38.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590771927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.140 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds