Wall clock time and date at job start Mon Mar 30 2020 07:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47382 * 2 1 4 4 C 1.52999 * 109.46979 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46963 * 299.99975 * 3 2 1 6 6 C 1.52995 * 109.47157 * 299.99793 * 5 3 2 7 7 C 1.50695 * 109.47170 * 59.99817 * 3 2 1 8 8 O 1.21280 * 120.00331 * 239.99867 * 7 3 2 9 9 N 1.34776 * 119.99936 * 60.00013 * 7 3 2 10 10 C 1.46503 * 120.00122 * 180.02562 * 9 7 3 11 11 H 1.09006 * 110.43216 * 323.91118 * 10 9 7 12 12 C 1.54268 * 110.48773 * 86.44967 * 10 9 7 13 13 C 1.53880 * 106.59650 * 142.28933 * 12 10 9 14 14 C 1.54265 * 106.59959 * 0.02562 * 13 12 10 15 15 H 1.09003 * 110.48675 * 95.20047 * 14 13 12 16 16 C 1.50701 * 110.49026 * 217.70987 * 14 13 12 17 17 H 1.08002 * 119.99761 * 118.54174 * 16 14 13 18 18 C 1.37871 * 119.99694 * 298.82737 * 16 14 13 19 19 N 1.31523 * 119.99908 * 179.72112 * 18 16 14 20 20 Si 1.86800 * 120.00405 * 359.71709 * 18 16 14 21 21 H 1.48500 * 109.47210 * 90.00069 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00300 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00390 * 20 18 16 24 24 C 1.54887 * 104.19682 * 336.39067 * 14 13 12 25 25 H 1.09003 * 109.46641 * 59.99694 * 1 2 3 26 26 H 1.08993 * 109.47475 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47192 * 300.00469 * 1 2 3 28 28 H 1.09007 * 109.46778 * 239.99643 * 2 1 3 29 29 H 1.09003 * 109.46641 * 120.00306 * 2 1 3 30 30 H 1.08996 * 109.47568 * 299.99958 * 4 3 2 31 31 H 1.09003 * 109.47157 * 60.00177 * 4 3 2 32 32 H 1.09004 * 109.46681 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.47350 * 60.00018 * 5 3 2 34 34 H 1.09002 * 109.46781 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47249 * 60.00017 * 6 5 3 36 36 H 1.09004 * 109.47295 * 180.02562 * 6 5 3 37 37 H 1.09003 * 109.47326 * 300.00590 * 6 5 3 38 38 H 0.96993 * 120.00174 * 359.97438 * 9 7 3 39 39 H 1.09002 * 110.03123 * 23.00825 * 12 10 9 40 40 H 1.08997 * 110.07468 * 261.59459 * 12 10 9 41 41 H 1.09001 * 110.03328 * 240.71486 * 13 12 10 42 42 H 1.08996 * 110.03144 * 119.28542 * 13 12 10 43 43 H 0.96995 * 120.00181 * 179.97438 * 19 18 16 44 44 H 1.09006 * 110.75769 * 156.25769 * 24 14 13 45 45 H 1.08997 * 110.75812 * 279.62568 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 6 1.5301 2.1637 -1.2493 6 6 2.0401 1.4425 -2.4985 7 6 1.5378 2.1529 1.2304 8 8 0.8406 3.1390 1.1192 9 7 1.8633 1.6924 2.4545 10 6 1.3746 2.3827 3.6507 11 1 1.3495 3.4598 3.4850 12 6 -0.0251 1.8636 4.0396 13 6 -0.0650 1.8169 5.5772 14 6 1.3116 2.3098 6.0689 15 1 1.2759 3.3748 6.2982 16 6 1.7515 1.5257 7.2784 17 1 2.6565 0.9375 7.2408 18 6 0.9954 1.5547 8.4310 19 7 1.3764 0.8660 9.4848 20 14 -0.5699 2.5720 8.4960 21 1 -1.7196 1.7399 8.0589 22 1 -0.7984 3.0406 9.8865 23 1 -0.4362 3.7443 7.5943 24 6 2.2602 2.0411 4.8744 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9331 0.9287 0.8908 31 1 3.9338 0.9284 -0.8891 32 1 3.9334 2.4700 0.0011 33 1 0.4402 2.1638 -1.2493 34 1 1.8939 3.1912 -1.2495 35 1 1.6768 0.4148 -2.4985 36 1 1.6772 1.9566 -3.3885 37 1 3.1301 1.4424 -2.4984 38 1 2.4206 0.9036 2.5436 39 1 -0.1796 0.8648 3.6316 40 1 -0.7926 2.5418 3.6667 41 1 -0.2388 0.7953 5.9153 42 1 -0.8512 2.4730 5.9504 43 1 0.8447 0.8867 10.2958 44 1 3.1302 2.6966 4.9169 45 1 2.5644 0.9948 4.8504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590771927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:58 Heat of formation + Delta-G solvation = -91.723836 kcal Electronic energy + Delta-G solvation = -21569.799952 eV Core-core repulsion = 18584.951923 eV Total energy + Delta-G solvation = -2984.848029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51326 -39.23170 -37.50596 -35.35202 -34.04446 -32.14401 -30.85583 -30.10325 -29.00406 -26.15488 -25.36023 -24.22841 -22.84209 -21.52596 -21.04954 -19.62051 -18.75127 -17.66727 -17.28271 -16.77993 -16.45797 -16.21939 -15.73760 -15.34551 -14.82640 -14.68628 -14.36678 -14.07553 -14.02734 -13.76097 -13.45218 -13.41420 -12.94288 -12.81344 -12.72771 -12.58365 -12.46949 -12.25719 -12.16375 -11.91525 -11.85368 -11.70697 -11.58528 -11.37358 -11.31210 -11.24111 -10.98456 -10.72269 -10.54917 -9.97269 -8.28948 -6.31267 1.32544 1.36049 1.45352 1.71804 2.25842 2.33964 3.06658 3.62336 3.69963 3.80557 3.89004 3.92483 4.05276 4.19686 4.34304 4.49973 4.54071 4.56397 4.65478 4.67179 4.69835 4.73968 4.82414 4.87132 4.90852 4.96184 4.98691 5.00875 5.08585 5.12994 5.14751 5.23938 5.24878 5.31769 5.33977 5.39602 5.42212 5.57299 5.62332 5.68270 5.77718 6.32293 6.64906 6.75267 7.33079 7.34445 8.87555 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037791 B = 0.004241 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.742874 B = 6600.065694 C = 6739.213757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C -0.074 4.074 4 C -0.142 4.142 5 C -0.100 4.100 6 C -0.149 4.149 7 C 0.519 3.481 8 O -0.587 6.587 9 N -0.709 5.709 10 C 0.147 3.853 11 H 0.074 0.926 12 C -0.118 4.118 13 C -0.128 4.128 14 C 0.006 3.994 15 H 0.027 0.973 16 C -0.509 4.509 17 H 0.041 0.959 18 C 0.016 3.984 19 N -0.949 5.949 20 Si 0.936 3.064 21 H -0.267 1.267 22 H -0.296 1.296 23 H -0.250 1.250 24 C -0.098 4.098 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.041 0.959 43 H 0.265 0.735 44 H 0.067 0.933 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -2.020 -23.821 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.077 4.077 4 C -0.199 4.199 5 C -0.138 4.138 6 C -0.206 4.206 7 C 0.307 3.693 8 O -0.468 6.468 9 N -0.360 5.360 10 C 0.042 3.958 11 H 0.092 0.908 12 C -0.157 4.157 13 C -0.166 4.166 14 C -0.013 4.013 15 H 0.046 0.954 16 C -0.547 4.547 17 H 0.059 0.941 18 C -0.181 4.181 19 N -0.590 5.590 20 Si 0.762 3.238 21 H -0.192 1.192 22 H -0.223 1.223 23 H -0.174 1.174 24 C -0.136 4.136 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.248 0.752 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.248 -1.366 -23.724 23.796 hybrid contribution -0.675 0.206 1.092 1.300 sum 0.574 -1.160 -22.631 22.668 Atomic orbital electron populations 1.21871 0.96388 1.02143 1.01158 1.21676 0.95630 0.92942 1.04454 1.20916 0.98228 0.96826 0.91718 1.21947 0.90982 1.02646 1.04363 1.21357 1.00538 0.98602 0.93350 1.21885 1.01998 1.00894 0.95833 1.21236 0.78858 0.83703 0.85469 1.90651 1.40016 1.28658 1.87431 1.46044 1.53128 1.31953 1.04860 1.21676 0.93515 0.96470 0.84131 0.90818 1.22393 0.97054 1.01188 0.95052 1.22494 0.98496 1.00630 0.95018 1.19883 0.92410 0.95755 0.93246 0.95446 1.21296 1.08872 1.28032 0.96497 0.94085 1.25774 1.00942 0.96189 0.95218 1.70038 1.41129 1.43780 1.04075 0.86008 0.80581 0.80576 0.76627 1.19241 1.22265 1.17419 1.22516 0.97282 1.01575 0.92201 0.92157 0.91202 0.95300 0.88004 0.90764 0.91233 0.88753 0.93026 0.92677 0.93246 0.91215 0.92341 0.91204 0.75243 0.91067 0.92558 0.92674 0.94028 0.92648 0.91453 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.31 71.98 0.67 -2.22 16 2 C -0.11 -1.62 4.54 30.60 0.14 -1.49 16 3 C -0.07 -1.37 0.43 -52.93 -0.02 -1.39 16 4 C -0.14 -2.02 8.02 71.98 0.58 -1.44 16 5 C -0.10 -1.91 3.93 30.59 0.12 -1.79 16 6 C -0.15 -1.81 9.21 71.98 0.66 -1.15 16 7 C 0.52 14.17 5.21 87.66 0.46 14.63 16 8 O -0.59 -21.18 15.69 -3.03 -0.05 -21.22 16 9 N -0.71 -18.64 4.90 -437.48 -2.14 -20.78 16 10 C 0.15 4.83 3.16 46.06 0.15 4.98 16 11 H 0.07 2.64 7.66 -2.38 -0.02 2.62 16 12 C -0.12 -4.11 6.53 31.32 0.20 -3.90 16 13 C -0.13 -5.32 4.64 31.32 0.15 -5.17 16 14 C 0.01 0.29 2.30 -10.47 -0.02 0.26 16 15 H 0.03 1.28 7.32 -2.39 -0.02 1.26 16 16 C -0.51 -28.27 8.98 25.60 0.23 -28.04 16 17 H 0.04 2.48 8.02 -2.91 -0.02 2.46 16 18 C 0.02 0.91 5.45 84.65 0.46 1.37 16 19 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 20 Si 0.94 44.97 24.66 68.60 1.69 46.66 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.25 -11.34 6.37 99.48 0.63 -10.71 16 24 C -0.10 -3.55 5.88 31.88 0.19 -3.36 16 25 H 0.06 1.08 6.43 -2.39 -0.02 1.06 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.03 0.68 7.22 -2.39 -0.02 0.66 16 28 H 0.10 1.03 6.43 -2.38 -0.02 1.02 16 29 H 0.07 1.02 7.56 -2.39 -0.02 1.01 16 30 H 0.07 0.89 7.56 -2.39 -0.02 0.87 16 31 H 0.09 0.90 6.43 -2.39 -0.02 0.89 16 32 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.05 1.22 6.39 -2.39 -0.02 1.21 16 34 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.07 0.70 6.43 -2.38 -0.02 0.68 16 36 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.07 0.69 6.43 -2.39 -0.02 0.67 16 38 H 0.41 8.65 7.37 -92.71 -0.68 7.97 16 39 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.05 2.42 7.82 -2.39 -0.02 2.41 16 42 H 0.04 1.72 5.73 -2.39 -0.01 1.71 16 43 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.07 2.32 8.14 -2.38 -0.02 2.31 16 45 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 Total: -1.00 -68.55 335.26 3.96 -64.60 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.20 Total: 18.09 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 3.95 Total: -28.71 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.84 Total: -79.40 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.69 Total: 46.66 kcal Total: -68.55 3.96 -64.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590771927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.127 kcal (2) G-P(sol) polarization free energy of solvation -68.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds