Wall clock time and date at job start Mon Mar 30 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46783 * 2 1 4 4 N 1.46496 * 109.46959 * 240.00453 * 2 1 3 5 5 C 1.34776 * 120.00404 * 61.45196 * 4 2 1 6 6 O 1.21286 * 119.99917 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00189 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47237 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47118 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46763 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46882 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99999 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00076 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99672 * 180.02562 * 13 11 10 15 15 Si 1.86791 * 119.99957 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47091 * 90.00022 * 15 13 11 17 17 H 1.48495 * 109.47438 * 209.99898 * 15 13 11 18 18 H 1.48499 * 109.47315 * 330.00377 * 15 13 11 19 19 C 1.52995 * 109.46997 * 120.00026 * 2 1 3 20 20 C 1.53790 * 113.61431 * 66.04944 * 19 2 1 21 21 C 1.53778 * 87.08094 * 139.97955 * 20 19 2 22 22 C 1.53778 * 87.08262 * 334.56624 * 21 20 19 23 23 H 1.08996 * 109.47139 * 303.83351 * 1 2 3 24 24 H 1.08995 * 109.47392 * 63.83299 * 1 2 3 25 25 H 1.09003 * 109.47134 * 183.83503 * 1 2 3 26 26 H 1.09004 * 109.46830 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47475 * 300.00006 * 3 2 1 28 28 H 1.09005 * 109.47182 * 60.00288 * 3 2 1 29 29 H 0.97002 * 119.99996 * 241.45030 * 4 2 1 30 30 H 1.08996 * 109.47298 * 299.99927 * 7 5 4 31 31 H 1.09003 * 109.47280 * 59.99968 * 7 5 4 32 32 H 1.09005 * 109.47074 * 300.00418 * 8 7 5 33 33 H 1.09003 * 109.46841 * 59.99909 * 8 7 5 34 34 H 1.09009 * 109.46610 * 299.99484 * 9 8 7 35 35 H 1.08990 * 109.47427 * 59.99912 * 9 8 7 36 36 H 1.08998 * 109.47236 * 299.99119 * 10 9 8 37 37 H 1.08998 * 109.47792 * 59.99613 * 10 9 8 38 38 H 0.97006 * 119.99675 * 180.02562 * 14 13 11 39 39 H 1.08999 * 112.91382 * 294.79189 * 19 2 1 40 40 H 1.08991 * 113.61068 * 25.42662 * 20 19 2 41 41 H 1.09000 * 113.68572 * 254.53460 * 20 19 2 42 42 H 1.08997 * 113.61986 * 89.11628 * 21 20 19 43 43 H 1.09005 * 113.61163 * 220.02136 * 21 20 19 44 44 H 1.08997 * 113.61894 * 139.98538 * 22 21 20 45 45 H 1.09009 * 113.61553 * 270.89017 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.7170 -0.2132 -2.4201 6 8 1.0413 0.7878 -2.5311 7 6 2.2198 -0.9232 -3.6506 8 6 1.7393 -0.1816 -4.8995 9 6 2.2492 -0.9028 -6.1488 10 6 1.7692 -0.1607 -7.3977 11 6 2.2720 -0.8707 -8.6282 12 1 2.8741 -1.7619 -8.5293 13 6 1.9633 -0.3827 -9.8802 14 7 2.4017 -1.0027 -10.9540 15 14 0.9214 1.1581 -10.0513 16 1 1.8039 2.3522 -10.0759 17 1 0.1431 1.0918 -11.3142 18 1 -0.0111 1.2555 -8.8997 19 6 2.0400 -0.7212 1.2492 20 6 1.7060 -2.2222 1.2734 21 6 3.1134 -2.4458 1.8512 22 6 3.5193 -1.1322 1.1625 23 1 -0.3633 0.5722 0.8536 24 1 -0.3634 0.4532 -0.9223 25 1 -0.3633 -1.0254 0.0687 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 2.5585 -1.4913 -1.1074 30 1 3.3095 -0.9454 -3.6375 31 1 1.8358 -1.9433 -3.6639 32 1 0.6495 -0.1597 -4.9124 33 1 2.1230 0.8386 -4.8864 34 1 3.3390 -0.9249 -6.1361 35 1 1.8653 -1.9227 -6.1617 36 1 0.6795 -0.1383 -7.4106 37 1 2.1535 0.8592 -7.3846 38 1 2.1849 -0.6591 -11.8349 39 1 1.7845 -0.2021 2.1730 40 1 1.5669 -2.6545 0.2826 41 1 0.9040 -2.4813 1.9647 42 1 3.1514 -2.3982 2.9394 43 1 3.6168 -3.3242 1.4471 44 1 4.1813 -0.5099 1.7646 45 1 3.8760 -1.2666 0.1412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590872559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:41 Heat of formation + Delta-G solvation = -66.879371 kcal Electronic energy + Delta-G solvation = -20607.901942 eV Core-core repulsion = 17624.131249 eV Total energy + Delta-G solvation = -2983.770692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62296 -39.63068 -36.76761 -35.79373 -34.60428 -33.01499 -31.41260 -28.47387 -27.60608 -26.42275 -26.08964 -24.07036 -21.99678 -21.51349 -21.17044 -19.69582 -18.84460 -18.28032 -16.84362 -16.68808 -16.33117 -16.15341 -15.58853 -15.45810 -14.91464 -14.71737 -14.64990 -13.95285 -13.86172 -13.62768 -13.52425 -13.33052 -13.13423 -12.99183 -12.78844 -12.77082 -12.48702 -12.31400 -12.20574 -12.02391 -11.75519 -11.48522 -11.40570 -11.34181 -11.25784 -11.09971 -10.98248 -10.76416 -10.41010 -9.97316 -8.30178 -6.33225 1.34505 1.35972 1.48989 1.74756 2.27148 2.35691 3.05280 3.61158 3.64942 3.77478 3.88526 4.00662 4.04874 4.16413 4.16567 4.34018 4.43081 4.61003 4.65534 4.76240 4.77256 4.77917 4.82626 4.86656 4.87898 4.95514 4.97084 4.99367 5.14336 5.15257 5.15780 5.20727 5.27200 5.31128 5.37399 5.41137 5.59828 5.61070 5.65829 5.68343 5.74716 6.29245 6.66897 6.74788 7.31653 7.38377 8.86539 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036668 B = 0.003109 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.434797 B = 9005.038599 C = 9436.067542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.181 3.819 3 C -0.160 4.160 4 N -0.713 5.713 5 C 0.513 3.487 6 O -0.573 6.573 7 C -0.134 4.134 8 C -0.095 4.095 9 C -0.094 4.094 10 C -0.016 4.016 11 C -0.531 4.531 12 H 0.037 0.963 13 C 0.004 3.996 14 N -0.951 5.951 15 Si 0.948 3.052 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.252 1.252 19 C -0.107 4.107 20 C -0.139 4.139 21 C -0.137 4.137 22 C -0.141 4.141 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.410 0.590 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.013 0.987 37 H 0.012 0.988 38 H 0.266 0.734 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 -1.205 31.419 31.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.095 3.905 3 C -0.218 4.218 4 N -0.368 5.368 5 C 0.301 3.699 6 O -0.452 6.452 7 C -0.174 4.174 8 C -0.133 4.133 9 C -0.132 4.132 10 C -0.054 4.054 11 C -0.569 4.569 12 H 0.055 0.945 13 C -0.193 4.193 14 N -0.592 5.592 15 Si 0.772 3.228 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.176 1.176 19 C -0.125 4.125 20 C -0.177 4.177 21 C -0.175 4.175 22 C -0.178 4.178 23 H 0.091 0.909 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.248 0.752 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.244 -0.503 31.183 31.188 hybrid contribution -0.129 0.249 -0.835 0.881 sum -0.373 -0.253 30.349 30.352 Atomic orbital electron populations 1.22126 0.94977 1.02189 1.02364 1.20193 0.93576 0.92026 0.84677 1.22147 1.01072 0.96002 1.02570 1.46214 1.54914 1.30956 1.04693 1.21007 0.79123 0.84256 0.85546 1.90636 1.40030 1.27207 1.87340 1.21694 1.03751 1.01062 0.90900 1.21249 1.00353 0.98839 0.92848 1.21343 1.00107 0.98807 0.92905 1.19568 0.96060 0.95858 0.93878 1.21555 1.32316 1.11631 0.91393 0.94508 1.25997 0.97113 1.00670 0.95512 1.70063 1.48055 1.42479 0.98601 0.85686 0.79590 0.79500 0.78064 1.19188 1.20695 1.17619 1.22862 0.97014 0.95906 0.96731 1.22989 0.98033 0.94953 1.01687 1.22812 0.96190 0.97690 1.00771 1.23007 0.95573 0.97846 1.01385 0.90905 0.93567 0.92071 0.92412 0.93249 0.90830 0.75191 0.87032 0.87065 0.93078 0.92993 0.92557 0.92576 0.96833 0.96932 0.92494 0.87085 0.90199 0.90905 0.89452 0.90863 0.90938 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 8.39 71.98 0.60 -2.40 16 2 C 0.18 3.01 0.58 3.60 0.00 3.01 16 3 C -0.16 -3.07 8.32 71.98 0.60 -2.48 16 4 N -0.71 -12.46 4.29 -422.94 -1.81 -14.27 16 5 C 0.51 12.78 7.24 87.66 0.63 13.41 16 6 O -0.57 -19.02 12.17 -3.05 -0.04 -19.06 16 7 C -0.13 -3.14 5.70 29.85 0.17 -2.97 16 8 C -0.09 -3.11 4.50 30.59 0.14 -2.97 16 9 C -0.09 -3.67 5.15 30.59 0.16 -3.51 16 10 C -0.02 -0.80 4.04 29.85 0.12 -0.68 16 11 C -0.53 -31.61 9.66 25.60 0.25 -31.36 16 12 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 13 C 0.00 0.22 5.47 84.66 0.46 0.69 16 14 N -0.95 -61.01 13.96 21.45 0.30 -60.71 16 15 Si 0.95 46.35 27.47 68.60 1.88 48.23 16 16 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 H -0.25 -11.76 6.54 99.48 0.65 -11.11 16 19 C -0.11 -1.16 3.03 -10.27 -0.03 -1.19 16 20 C -0.14 -1.33 6.62 31.12 0.21 -1.12 16 21 C -0.14 -1.10 8.08 31.12 0.25 -0.85 16 22 C -0.14 -1.34 7.16 31.12 0.22 -1.12 16 23 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.20 6.18 -2.39 -0.01 1.19 16 25 H 0.06 1.05 7.53 -2.39 -0.02 1.03 16 26 H 0.06 1.04 8.01 -2.38 -0.02 1.02 16 27 H 0.05 1.30 6.06 -2.39 -0.01 1.29 16 28 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.41 5.05 5.79 -92.71 -0.54 4.51 16 30 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 32 H 0.05 1.79 8.10 -2.38 -0.02 1.78 16 33 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 34 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 37 H 0.01 0.60 7.57 -2.39 -0.02 0.59 16 38 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 0.82 6.98 -2.39 -0.02 0.81 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.08 0.81 6.30 -2.38 -0.01 0.79 16 Total: -1.00 -72.30 346.26 4.47 -67.83 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.35 Total: 11.53 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 3.79 Total: -33.55 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -1.51 Total: -74.98 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.04 Total: -19.06 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.88 Total: 48.23 kcal Total: -72.30 4.47 -67.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590872559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.950 kcal (2) G-P(sol) polarization free energy of solvation -72.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds