Wall clock time and date at job start Mon Mar 30 2020 07:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47165 * 2 1 4 4 C 1.52996 * 109.47344 * 240.00112 * 2 1 3 5 5 C 1.52999 * 109.47233 * 119.99831 * 2 1 3 6 6 C 1.53488 * 114.20782 * 55.02158 * 5 2 1 7 7 N 1.47066 * 87.98776 * 220.15017 * 6 5 2 8 8 C 1.34774 * 136.05816 * 207.08483 * 7 6 5 9 9 O 1.21277 * 120.00212 * 359.97438 * 8 7 6 10 10 C 1.50707 * 120.00124 * 179.97438 * 8 7 6 11 11 C 1.53001 * 109.46941 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46805 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47215 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47033 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00534 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99848 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99782 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00049 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47365 * 89.99559 * 18 16 14 20 20 H 1.48497 * 109.47476 * 209.99775 * 18 16 14 21 21 H 1.48505 * 109.46997 * 329.99741 * 18 16 14 22 22 C 1.47066 * 87.88297 * 27.33995 * 7 6 5 23 23 H 1.09005 * 109.47163 * 306.36400 * 1 2 3 24 24 H 1.08999 * 109.47198 * 66.36188 * 1 2 3 25 25 H 1.08999 * 109.47037 * 186.36243 * 1 2 3 26 26 H 1.08992 * 109.47036 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.46506 * 299.99857 * 3 2 1 28 28 H 1.09000 * 109.46846 * 59.99537 * 3 2 1 29 29 H 1.08999 * 109.46984 * 299.99955 * 4 2 1 30 30 H 1.09001 * 109.47066 * 59.99508 * 4 2 1 31 31 H 1.09001 * 109.47670 * 180.02562 * 4 2 1 32 32 H 1.09001 * 113.27961 * 188.09032 * 5 2 1 33 33 H 1.08996 * 113.46998 * 105.36734 * 6 5 2 34 34 H 1.09005 * 113.51747 * 334.93360 * 6 5 2 35 35 H 1.08997 * 109.46968 * 60.00088 * 10 8 7 36 36 H 1.08996 * 109.47002 * 300.00302 * 10 8 7 37 37 H 1.08997 * 109.47413 * 60.00121 * 11 10 8 38 38 H 1.09001 * 109.46970 * 299.99554 * 11 10 8 39 39 H 1.09000 * 109.47498 * 299.99999 * 12 11 10 40 40 H 1.09010 * 109.47405 * 59.99842 * 12 11 10 41 41 H 1.08996 * 109.47403 * 300.00086 * 13 12 11 42 42 H 1.09007 * 109.47011 * 60.00265 * 13 12 11 43 43 H 0.97002 * 119.99531 * 180.02562 * 17 16 14 44 44 H 1.09002 * 113.46567 * 87.44664 * 22 7 6 45 45 H 1.09004 * 113.46554 * 217.87435 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 1.4932 -2.1450 1.4213 7 7 1.3700 -1.8681 2.8604 8 6 1.3852 -2.5973 3.9937 9 8 1.5306 -3.8001 3.9391 10 6 1.2215 -1.9181 5.3291 11 6 1.2760 -2.9648 6.4437 12 6 1.1092 -2.2754 7.7993 13 6 1.1630 -3.3220 8.9139 14 6 0.9993 -2.6428 10.2491 15 1 0.8694 -1.5718 10.2979 16 6 1.0144 -3.3889 11.4086 17 7 0.8710 -2.7962 12.5738 18 14 1.2384 -5.2415 11.3243 19 1 2.6854 -5.5686 11.3893 20 1 0.5353 -5.8777 12.4671 21 1 0.6725 -5.7510 10.0493 22 6 1.2164 -0.4461 2.5182 23 1 -0.3634 0.6093 0.8276 24 1 -0.3633 0.4120 -0.9414 25 1 -0.3633 -1.0213 0.1139 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7216 -1.2490 32 1 3.1182 -0.6370 1.3853 33 1 2.2225 -2.9211 1.1895 34 1 0.5351 -2.3058 0.9267 35 1 0.2610 -1.4038 5.3598 36 1 2.0252 -1.1955 5.4701 37 1 2.2367 -3.4788 6.4129 38 1 0.4725 -3.6877 6.3029 39 1 1.9124 -1.5521 7.9404 40 1 0.1482 -1.7616 7.8299 41 1 0.3596 -4.0449 8.7727 42 1 2.1238 -3.8360 8.8836 43 1 0.8820 -3.3211 13.3895 44 1 0.1855 -0.1580 2.3126 45 1 1.7101 0.2252 3.2209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590894883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:52 Heat of formation + Delta-G solvation = -32.677771 kcal Electronic energy + Delta-G solvation = -20156.975768 eV Core-core repulsion = 17174.688168 eV Total energy + Delta-G solvation = -2982.287600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05382 -38.66494 -35.88069 -34.96966 -32.55712 -30.55167 -29.03270 -28.02851 -27.78141 -26.17365 -25.49325 -23.17549 -21.55016 -19.99994 -19.14774 -18.74008 -17.01799 -16.53221 -16.44845 -15.83062 -15.43524 -14.76911 -14.48748 -14.16648 -14.04364 -13.67815 -13.36439 -13.04295 -12.70140 -12.63351 -12.46733 -12.35347 -12.18703 -12.02101 -11.98293 -11.71935 -11.44323 -11.17483 -11.08685 -10.99873 -10.72249 -10.60099 -10.51048 -9.90934 -9.77777 -9.62226 -9.38542 -9.09876 -8.79883 -8.47553 -5.98887 -3.96146 2.63052 2.75965 3.36946 3.43776 3.50295 3.84946 4.27060 4.30822 4.49105 4.51892 4.62052 4.76186 4.88973 5.06385 5.08624 5.15479 5.23531 5.25356 5.25605 5.33018 5.35777 5.36613 5.39040 5.51232 5.51527 5.61085 5.62527 5.73423 5.80441 5.86131 5.91846 6.00377 6.06118 6.19446 6.44045 6.70834 6.84466 7.01625 7.40419 7.53310 7.62927 7.86678 8.19228 8.60266 9.06175 9.64611 11.14629 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046063 B = 0.002749 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.720060 B =10183.459238 C =10561.296513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.115 4.115 6 C 0.104 3.896 7 N -0.653 5.653 8 C 0.541 3.459 9 O -0.537 6.537 10 C -0.131 4.131 11 C -0.107 4.107 12 C -0.102 4.102 13 C -0.016 4.016 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C 0.099 3.901 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.016 0.984 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.091 0.909 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.024 8.729 -30.021 31.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.057 4.057 3 C -0.198 4.198 4 C -0.199 4.199 5 C -0.134 4.134 6 C -0.019 4.019 7 N -0.390 5.390 8 C 0.332 3.668 9 O -0.413 6.413 10 C -0.170 4.170 11 C -0.145 4.145 12 C -0.139 4.139 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.024 4.024 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.094 7.886 -29.616 30.668 hybrid contribution 0.070 -0.893 0.124 0.904 sum 1.164 6.993 -29.492 30.332 Atomic orbital electron populations 1.22090 0.94436 1.02212 1.02111 1.20403 0.95660 0.95570 0.94100 1.21856 1.01127 0.94860 1.01984 1.21854 1.01193 1.00324 0.96534 1.23118 1.00513 0.95550 0.94223 1.23038 1.00884 0.97256 0.80719 1.49709 1.73509 1.10057 1.05735 1.20713 0.74978 0.86680 0.84415 1.90705 1.49357 1.14457 1.86783 1.21711 1.03878 1.00423 0.91032 1.21502 1.02845 0.96829 0.93276 1.21473 1.00823 0.98982 0.92671 1.19579 0.96296 0.95073 0.94348 1.21185 1.49453 0.95863 0.89171 0.91108 1.25045 0.94669 0.98534 0.95395 1.69923 1.51130 1.35910 0.97601 0.86770 0.78546 0.86123 0.77847 1.20318 1.21459 1.18892 1.23276 1.00757 0.83470 0.94939 0.92024 0.92331 0.92198 0.92495 0.92503 0.92362 0.92471 0.92464 0.92472 0.87760 0.90769 0.89779 0.89158 0.89142 0.91774 0.91807 0.92862 0.92849 0.96610 0.97046 0.92833 0.89137 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 7.40 37.15 0.28 -0.45 16 2 C -0.06 -0.28 0.71 -154.51 -0.11 -0.39 16 3 C -0.14 -0.63 8.47 37.16 0.31 -0.31 16 4 C -0.14 -0.67 8.33 37.16 0.31 -0.36 16 5 C -0.12 -0.74 3.38 -89.98 -0.30 -1.04 16 6 C 0.10 0.92 7.32 -8.52 -0.06 0.86 16 7 N -0.65 -7.43 3.69 -185.07 -0.68 -8.11 16 8 C 0.54 8.18 8.08 -10.98 -0.09 8.09 16 9 O -0.54 -10.37 16.76 5.56 0.09 -10.28 16 10 C -0.13 -1.83 5.53 -27.88 -0.15 -1.98 16 11 C -0.11 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.10 -2.07 5.15 -26.73 -0.14 -2.21 16 13 C -0.02 -0.39 4.04 -27.89 -0.11 -0.50 16 14 C -0.52 -15.30 9.66 -34.44 -0.33 -15.63 16 15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.91 -28.66 13.96 55.43 0.77 -27.89 16 18 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.26 -6.63 6.54 56.52 0.37 -6.26 16 22 C 0.10 0.74 7.73 -8.38 -0.06 0.67 16 23 H 0.06 0.28 6.53 -51.93 -0.34 -0.06 16 24 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.32 6.05 -51.93 -0.31 0.00 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.28 7.64 -51.93 -0.40 -0.11 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.66 6.07 -51.93 -0.32 0.35 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.06 8.14 -51.92 -0.42 0.63 16 41 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 42 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 44 H 0.09 0.57 5.69 -51.93 -0.30 0.28 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -34.57 353.47 -8.19 -42.77 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -8.35 Total: -6.36 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -0.69 Total: -13.43 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.09 Total: -36.00 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.57 -8.19 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590894883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.089 kcal (2) G-P(sol) polarization free energy of solvation -34.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds