Wall clock time and date at job start Mon Mar 30 2020 07:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47165 * 2 1 4 4 C 1.52996 * 109.47344 * 240.00112 * 2 1 3 5 5 C 1.52999 * 109.47233 * 119.99831 * 2 1 3 6 6 C 1.53488 * 114.20782 * 55.02158 * 5 2 1 7 7 N 1.47066 * 87.98776 * 220.15017 * 6 5 2 8 8 C 1.34774 * 136.05816 * 207.08483 * 7 6 5 9 9 O 1.21277 * 120.00212 * 359.97438 * 8 7 6 10 10 C 1.50707 * 120.00124 * 179.97438 * 8 7 6 11 11 C 1.53001 * 109.46941 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46805 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47215 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47033 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00534 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99848 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99782 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00049 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47365 * 89.99559 * 18 16 14 20 20 H 1.48497 * 109.47476 * 209.99775 * 18 16 14 21 21 H 1.48505 * 109.46997 * 329.99741 * 18 16 14 22 22 C 1.47066 * 87.88297 * 27.33995 * 7 6 5 23 23 H 1.09005 * 109.47163 * 306.36400 * 1 2 3 24 24 H 1.08999 * 109.47198 * 66.36188 * 1 2 3 25 25 H 1.08999 * 109.47037 * 186.36243 * 1 2 3 26 26 H 1.08992 * 109.47036 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.46506 * 299.99857 * 3 2 1 28 28 H 1.09000 * 109.46846 * 59.99537 * 3 2 1 29 29 H 1.08999 * 109.46984 * 299.99955 * 4 2 1 30 30 H 1.09001 * 109.47066 * 59.99508 * 4 2 1 31 31 H 1.09001 * 109.47670 * 180.02562 * 4 2 1 32 32 H 1.09001 * 113.27961 * 188.09032 * 5 2 1 33 33 H 1.08996 * 113.46998 * 105.36734 * 6 5 2 34 34 H 1.09005 * 113.51747 * 334.93360 * 6 5 2 35 35 H 1.08997 * 109.46968 * 60.00088 * 10 8 7 36 36 H 1.08996 * 109.47002 * 300.00302 * 10 8 7 37 37 H 1.08997 * 109.47413 * 60.00121 * 11 10 8 38 38 H 1.09001 * 109.46970 * 299.99554 * 11 10 8 39 39 H 1.09000 * 109.47498 * 299.99999 * 12 11 10 40 40 H 1.09010 * 109.47405 * 59.99842 * 12 11 10 41 41 H 1.08996 * 109.47403 * 300.00086 * 13 12 11 42 42 H 1.09007 * 109.47011 * 60.00265 * 13 12 11 43 43 H 0.97002 * 119.99531 * 180.02562 * 17 16 14 44 44 H 1.09002 * 113.46567 * 87.44664 * 22 7 6 45 45 H 1.09004 * 113.46554 * 217.87435 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 1.4932 -2.1450 1.4213 7 7 1.3700 -1.8681 2.8604 8 6 1.3852 -2.5973 3.9937 9 8 1.5306 -3.8001 3.9391 10 6 1.2215 -1.9181 5.3291 11 6 1.2760 -2.9648 6.4437 12 6 1.1092 -2.2754 7.7993 13 6 1.1630 -3.3220 8.9139 14 6 0.9993 -2.6428 10.2491 15 1 0.8694 -1.5718 10.2979 16 6 1.0144 -3.3889 11.4086 17 7 0.8710 -2.7962 12.5738 18 14 1.2384 -5.2415 11.3243 19 1 2.6854 -5.5686 11.3893 20 1 0.5353 -5.8777 12.4671 21 1 0.6725 -5.7510 10.0493 22 6 1.2164 -0.4461 2.5182 23 1 -0.3634 0.6093 0.8276 24 1 -0.3633 0.4120 -0.9414 25 1 -0.3633 -1.0213 0.1139 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7216 -1.2490 32 1 3.1182 -0.6370 1.3853 33 1 2.2225 -2.9211 1.1895 34 1 0.5351 -2.3058 0.9267 35 1 0.2610 -1.4038 5.3598 36 1 2.0252 -1.1955 5.4701 37 1 2.2367 -3.4788 6.4129 38 1 0.4725 -3.6877 6.3029 39 1 1.9124 -1.5521 7.9404 40 1 0.1482 -1.7616 7.8299 41 1 0.3596 -4.0449 8.7727 42 1 2.1238 -3.8360 8.8836 43 1 0.8820 -3.3211 13.3895 44 1 0.1855 -0.1580 2.3126 45 1 1.7101 0.2252 3.2209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590894883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:51 Heat of formation + Delta-G solvation = -53.502000 kcal Electronic energy + Delta-G solvation = -20157.878774 eV Core-core repulsion = 17174.688168 eV Total energy + Delta-G solvation = -2983.190606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80086 -39.69545 -36.73591 -36.41655 -34.61487 -32.13720 -30.17457 -28.46708 -28.14317 -27.46954 -26.45135 -24.27850 -22.92136 -21.72089 -20.04144 -19.26737 -18.86943 -17.94945 -17.20438 -16.83971 -16.52433 -16.28298 -15.47119 -15.20715 -15.06520 -14.76204 -14.31266 -14.02499 -13.95376 -13.79880 -13.56502 -13.51988 -13.11348 -12.89132 -12.84262 -12.74397 -12.37148 -12.34109 -12.12735 -11.93125 -11.77011 -11.67878 -11.52508 -11.46354 -11.37467 -11.27890 -11.13877 -10.76955 -10.72358 -9.68411 -8.30605 -6.33602 1.33991 1.35401 1.48459 1.56546 1.84111 2.35153 3.04672 3.25777 3.51310 3.80137 3.94238 3.98508 4.08054 4.11538 4.19703 4.39982 4.46823 4.51467 4.55973 4.60479 4.63005 4.66893 4.72466 4.78010 4.88703 4.90589 4.94742 5.02731 5.10055 5.15739 5.16912 5.20047 5.21500 5.23869 5.29263 5.44398 5.55206 5.56946 5.59571 5.63046 5.67068 6.28477 6.69644 6.74025 7.10803 7.31132 8.85965 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046063 B = 0.002749 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.720060 B =10183.459238 C =10561.296513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.050 4.050 3 C -0.140 4.140 4 C -0.143 4.143 5 C -0.098 4.098 6 C 0.095 3.905 7 N -0.656 5.656 8 C 0.535 3.465 9 O -0.593 6.593 10 C -0.122 4.122 11 C -0.097 4.097 12 C -0.092 4.092 13 C -0.017 4.017 14 C -0.530 4.530 15 H 0.038 0.962 16 C 0.004 3.996 17 N -0.950 5.950 18 Si 0.947 3.053 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.253 1.253 22 C 0.097 3.903 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.014 0.986 42 H 0.013 0.987 43 H 0.266 0.734 44 H 0.108 0.892 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 9.300 -31.978 33.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.051 4.051 3 C -0.197 4.197 4 C -0.200 4.200 5 C -0.117 4.117 6 C -0.027 4.027 7 N -0.391 5.391 8 C 0.326 3.674 9 O -0.473 6.473 10 C -0.161 4.161 11 C -0.135 4.135 12 C -0.130 4.130 13 C -0.054 4.054 14 C -0.568 4.568 15 H 0.056 0.944 16 C -0.193 4.193 17 N -0.591 5.591 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.177 1.177 22 C -0.025 4.025 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.075 0.925 44 H 0.126 0.874 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.090 8.515 -31.621 32.766 hybrid contribution 0.058 -0.950 0.679 1.169 sum 1.148 7.566 -30.942 31.874 Atomic orbital electron populations 1.22099 0.94126 1.01987 1.02721 1.20362 0.95822 0.95746 0.93163 1.21850 1.01151 0.94284 1.02451 1.21865 1.01199 1.00162 0.96771 1.23022 1.00409 0.93615 0.94658 1.23286 1.01464 0.98563 0.79355 1.49797 1.71504 1.11944 1.05842 1.20806 0.74755 0.86130 0.85664 1.90675 1.52313 1.16681 1.87681 1.21593 1.05895 0.99406 0.89250 1.21291 1.01669 0.97372 0.93184 1.21328 1.01306 0.97854 0.92497 1.19574 0.96061 0.96035 0.93756 1.21528 1.49044 0.94743 0.91512 0.94400 1.25988 0.94398 1.03936 0.94945 1.70059 1.52448 1.38060 0.98501 0.85697 0.79081 0.79680 0.78446 1.19204 1.20616 1.17722 1.23577 1.02171 0.81351 0.95359 0.91521 0.91703 0.92780 0.92508 0.91965 0.92019 0.92910 0.91765 0.92522 0.87718 0.92091 0.88600 0.87026 0.87015 0.92978 0.93078 0.92367 0.92401 0.96812 0.96911 0.92481 0.87419 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 7.40 71.98 0.53 -0.53 16 2 C -0.05 -0.37 0.71 -52.18 -0.04 -0.41 16 3 C -0.14 -0.87 8.47 71.99 0.61 -0.26 16 4 C -0.14 -1.08 8.33 71.98 0.60 -0.48 16 5 C -0.10 -1.05 3.38 -10.38 -0.04 -1.08 16 6 C 0.10 1.57 7.32 83.17 0.61 2.18 16 7 N -0.66 -13.87 3.69 -857.84 -3.16 -17.03 16 8 C 0.53 15.66 8.08 87.66 0.71 16.37 16 9 O -0.59 -23.11 16.76 -3.02 -0.05 -23.16 16 10 C -0.12 -3.17 5.53 29.85 0.17 -3.01 16 11 C -0.10 -3.36 4.50 30.59 0.14 -3.22 16 12 C -0.09 -3.67 5.15 30.59 0.16 -3.51 16 13 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 14 C -0.53 -31.66 9.66 25.60 0.25 -31.41 16 15 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 16 C 0.00 0.25 5.47 84.66 0.46 0.71 16 17 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 18 Si 0.95 46.56 27.47 68.60 1.88 48.44 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.25 -11.91 6.54 99.48 0.65 -11.26 16 22 C 0.10 1.17 7.73 83.26 0.64 1.81 16 23 H 0.07 0.41 6.53 -2.38 -0.02 0.39 16 24 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.05 0.45 6.05 -2.39 -0.01 0.44 16 26 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 0.45 7.64 -2.39 -0.02 0.43 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.37 6.07 -2.38 -0.01 1.36 16 35 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 38 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 42 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 43 H 0.27 15.91 8.31 -92.71 -0.77 15.13 16 44 H 0.11 0.99 5.69 -2.39 -0.01 0.98 16 45 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -75.69 353.47 4.76 -70.93 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 0.87 Total: 5.01 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.92 Total: -23.56 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -2.86 Total: -77.67 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.44 kcal Total: -75.69 4.76 -70.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590894883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.431 kcal (2) G-P(sol) polarization free energy of solvation -75.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds