Wall clock time and date at job start Mon Mar 30 2020 07:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46972 * 2 1 4 4 C 1.53006 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47127 * 299.99541 * 4 3 2 6 6 C 1.52992 * 109.47223 * 60.00047 * 4 3 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 4 3 2 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 4 3 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 4 3 10 10 C 1.46500 * 120.00169 * 180.02562 * 9 7 4 11 11 H 1.09003 * 110.01422 * 326.39172 * 10 9 7 12 12 C 1.54268 * 110.03355 * 87.82883 * 10 9 7 13 13 C 1.54884 * 104.19396 * 95.67306 * 12 10 9 14 14 C 1.54886 * 102.74803 * 37.94634 * 13 12 10 15 15 H 1.09004 * 110.48767 * 80.73549 * 14 13 12 16 16 C 1.50706 * 110.48660 * 203.37443 * 14 13 12 17 17 H 1.08008 * 119.99452 * 114.77275 * 16 14 13 18 18 C 1.37872 * 120.00161 * 294.77607 * 16 14 13 19 19 N 1.31512 * 120.00093 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99955 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47319 * 59.99754 * 20 18 16 22 22 H 1.48503 * 109.47242 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46969 * 299.99878 * 20 18 16 24 24 C 1.53871 * 110.03521 * 204.99693 * 10 9 7 25 25 H 1.09000 * 109.47380 * 299.99696 * 1 2 3 26 26 H 1.08996 * 109.47134 * 60.00785 * 1 2 3 27 27 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47452 * 239.99540 * 2 1 3 29 29 H 1.09004 * 109.47552 * 119.99695 * 2 1 3 30 30 H 1.08993 * 109.47662 * 59.99965 * 3 2 1 31 31 H 1.09000 * 109.46986 * 299.99742 * 3 2 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 34 34 H 1.09004 * 109.47261 * 300.00303 * 5 4 3 35 35 H 1.09001 * 109.47066 * 299.99881 * 6 4 3 36 36 H 1.08996 * 109.47747 * 59.99547 * 6 4 3 37 37 H 1.09002 * 109.47103 * 179.97438 * 6 4 3 38 38 H 0.96996 * 119.99844 * 359.97438 * 9 7 4 39 39 H 1.09000 * 110.49115 * 214.35825 * 12 10 9 40 40 H 1.09006 * 110.48687 * 336.99977 * 12 10 9 41 41 H 1.08995 * 110.76226 * 279.62721 * 13 12 10 42 42 H 1.09006 * 110.91391 * 156.32924 * 13 12 10 43 43 H 0.97001 * 119.99907 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.02967 * 359.97438 * 24 10 9 45 45 H 1.08998 * 110.03110 * 121.38083 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.7212 1.2483 6 6 4.0795 0.7215 -1.2501 7 6 4.0723 2.8634 -0.0013 8 8 3.2841 3.7852 -0.0017 9 7 5.3973 3.1097 -0.0024 10 6 5.8856 4.4909 -0.0025 11 1 5.2052 5.1271 -0.5686 12 6 6.0114 5.0071 1.4458 13 6 7.4984 4.7673 1.8067 14 6 8.2296 5.1021 0.4830 15 1 8.3501 6.1801 0.3759 16 6 9.5687 4.4127 0.4313 17 1 9.7547 3.6493 -0.3098 18 6 10.5563 4.7564 1.3299 19 7 10.3295 5.6855 2.2326 20 14 12.2164 3.9024 1.2652 21 1 12.8416 4.1354 -0.0614 22 1 13.0957 4.4482 2.3302 23 1 12.0313 2.4441 1.4760 24 6 7.2961 4.5514 -0.6146 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 5.1705 0.7216 1.2481 33 1 3.7172 -0.3065 1.2483 34 1 3.7175 1.2350 2.1385 35 1 3.7162 -0.3062 -1.2501 36 1 3.7158 1.2353 -2.1399 37 1 5.1695 0.7219 -1.2508 38 1 6.0277 2.3725 -0.0025 39 1 5.7735 6.0697 1.4942 40 1 5.3610 4.4390 2.1111 41 1 7.6649 3.7274 2.0878 42 1 7.8180 5.4375 2.6048 43 1 11.0245 5.9276 2.8646 44 1 7.6174 3.5530 -0.9113 45 1 7.3002 5.2170 -1.4778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593166759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:03 Heat of formation + Delta-G solvation = -81.344165 kcal Electronic energy + Delta-G solvation = -21254.797060 eV Core-core repulsion = 18270.399127 eV Total energy + Delta-G solvation = -2984.397933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.14448 -37.56859 -36.25344 -33.67944 -32.69946 -31.62145 -28.16483 -27.46520 -27.18293 -26.52790 -24.14401 -23.36107 -21.17103 -19.51654 -19.35287 -18.56398 -16.60421 -16.51018 -15.68758 -15.40896 -14.92203 -14.57496 -14.34022 -14.01250 -13.98446 -13.21078 -13.03771 -12.81346 -12.42544 -12.36828 -12.26804 -11.98035 -11.77825 -11.70834 -11.15318 -11.03327 -11.00515 -10.97490 -10.81982 -10.71511 -10.57415 -10.54624 -10.39043 -9.93832 -9.58256 -9.30315 -9.18683 -8.82859 -8.52479 -8.35603 -6.01922 -4.05214 2.95287 3.29805 3.35401 3.36947 3.54528 4.42208 4.57982 4.69293 4.76320 5.00585 5.04334 5.13815 5.29734 5.34985 5.48251 5.54069 5.60908 5.62604 5.68127 5.72200 5.74302 5.78648 5.83228 5.89576 5.98913 6.00664 6.08925 6.26372 6.32980 6.34602 6.37247 6.62568 6.65518 6.76994 6.94924 6.96213 7.26844 7.35286 7.69393 7.85215 7.93004 8.02047 8.42313 8.58659 8.97151 9.58763 11.07481 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032386 B = 0.003983 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.376050 B = 7028.277506 C = 7373.045833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.094 4.094 4 C -0.083 4.083 5 C -0.143 4.143 6 C -0.142 4.142 7 C 0.518 3.482 8 O -0.550 6.550 9 N -0.712 5.712 10 C 0.139 3.861 11 H 0.075 0.925 12 C -0.135 4.135 13 C -0.099 4.099 14 C 0.048 3.952 15 H 0.032 0.968 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.122 4.122 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.398 0.602 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.962 -11.289 -3.813 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.131 4.131 4 C -0.086 4.086 5 C -0.200 4.200 6 C -0.199 4.199 7 C 0.304 3.696 8 O -0.428 6.428 9 N -0.362 5.362 10 C 0.035 3.965 11 H 0.093 0.907 12 C -0.174 4.174 13 C -0.137 4.137 14 C 0.030 3.970 15 H 0.051 0.949 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.160 4.160 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.233 0.767 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.419 -10.503 -3.668 18.212 hybrid contribution 1.330 -0.738 0.088 1.523 sum -13.090 -11.241 -3.580 17.622 Atomic orbital electron populations 1.21763 0.95997 1.01273 1.01909 1.21683 0.95731 0.96972 1.02151 1.21415 0.92047 0.96370 1.03312 1.20807 0.97334 0.92863 0.97635 1.21916 1.01501 1.00438 0.96157 1.21910 1.01376 1.00518 0.96144 1.20497 0.82657 0.90754 0.75736 1.90655 1.55516 1.46325 1.50294 1.46301 1.06537 1.09450 1.73898 1.21763 0.96077 0.81333 0.97332 0.90733 1.22831 0.99641 0.99840 0.95077 1.22447 0.90292 1.00168 1.00808 1.19456 0.92186 0.96402 0.88978 0.94941 1.21128 0.97263 1.21081 1.15832 0.92797 1.24980 0.98412 0.95029 0.95489 1.69948 1.33705 1.30467 1.18532 0.86716 0.84130 0.79842 0.77614 1.20343 1.21369 1.20349 1.22604 0.92733 1.01133 0.99566 0.92767 0.92796 0.92972 0.91761 0.91713 0.91346 0.91407 0.91890 0.91344 0.92109 0.91323 0.92200 0.92000 0.76685 0.92140 0.93241 0.93560 0.91522 0.93012 0.92106 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.09 5.23 -26.73 -0.14 -1.23 16 3 C -0.09 -1.05 3.56 -26.73 -0.10 -1.14 16 4 C -0.08 -0.96 0.64 -155.66 -0.10 -1.06 16 5 C -0.14 -1.47 8.02 37.16 0.30 -1.18 16 6 C -0.14 -1.39 8.02 37.15 0.30 -1.09 16 7 C 0.52 8.12 6.48 -10.99 -0.07 8.05 16 8 O -0.55 -10.62 15.64 5.56 0.09 -10.54 16 9 N -0.71 -11.23 4.81 -52.72 -0.25 -11.48 16 10 C 0.14 2.55 3.25 -66.81 -0.22 2.33 16 11 H 0.07 1.42 7.56 -51.93 -0.39 1.03 16 12 C -0.14 -2.66 6.54 -25.07 -0.16 -2.82 16 13 C -0.10 -2.25 5.75 -24.74 -0.14 -2.40 16 14 C 0.05 1.16 2.72 -90.11 -0.25 0.92 16 15 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.51 -13.64 8.46 -34.44 -0.29 -13.93 16 17 H 0.05 1.40 7.54 -52.48 -0.40 1.00 16 18 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 19 N -0.89 -25.18 12.29 55.43 0.68 -24.50 16 20 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.12 -2.42 6.13 -25.62 -0.16 -2.58 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 29 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 30 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.06 0.65 7.57 -51.93 -0.39 0.26 16 33 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.59 7.56 -51.93 -0.39 0.19 16 38 H 0.40 5.65 7.16 -40.82 -0.29 5.36 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 41 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 42 H 0.07 1.67 7.55 -51.93 -0.39 1.28 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.06 1.16 7.13 -51.93 -0.37 0.79 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -29.41 347.17 -8.19 -37.59 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -8.16 Total: 3.22 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -0.75 Total: -15.37 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.43 Total: -35.98 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.41 -8.19 -37.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593166759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.749 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds