Wall clock time and date at job start Mon Mar 30 2020 07:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46972 * 2 1 4 4 C 1.53006 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47127 * 299.99541 * 4 3 2 6 6 C 1.52992 * 109.47223 * 60.00047 * 4 3 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 4 3 2 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 4 3 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 4 3 10 10 C 1.46500 * 120.00169 * 180.02562 * 9 7 4 11 11 H 1.09003 * 110.01422 * 326.39172 * 10 9 7 12 12 C 1.54268 * 110.03355 * 87.82883 * 10 9 7 13 13 C 1.54884 * 104.19396 * 95.67306 * 12 10 9 14 14 C 1.54886 * 102.74803 * 37.94634 * 13 12 10 15 15 H 1.09004 * 110.48767 * 80.73549 * 14 13 12 16 16 C 1.50706 * 110.48660 * 203.37443 * 14 13 12 17 17 H 1.08008 * 119.99452 * 114.77275 * 16 14 13 18 18 C 1.37872 * 120.00161 * 294.77607 * 16 14 13 19 19 N 1.31512 * 120.00093 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99955 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47319 * 59.99754 * 20 18 16 22 22 H 1.48503 * 109.47242 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46969 * 299.99878 * 20 18 16 24 24 C 1.53871 * 110.03521 * 204.99693 * 10 9 7 25 25 H 1.09000 * 109.47380 * 299.99696 * 1 2 3 26 26 H 1.08996 * 109.47134 * 60.00785 * 1 2 3 27 27 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47452 * 239.99540 * 2 1 3 29 29 H 1.09004 * 109.47552 * 119.99695 * 2 1 3 30 30 H 1.08993 * 109.47662 * 59.99965 * 3 2 1 31 31 H 1.09000 * 109.46986 * 299.99742 * 3 2 1 32 32 H 1.09002 * 109.47153 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 34 34 H 1.09004 * 109.47261 * 300.00303 * 5 4 3 35 35 H 1.09001 * 109.47066 * 299.99881 * 6 4 3 36 36 H 1.08996 * 109.47747 * 59.99547 * 6 4 3 37 37 H 1.09002 * 109.47103 * 179.97438 * 6 4 3 38 38 H 0.96996 * 119.99844 * 359.97438 * 9 7 4 39 39 H 1.09000 * 110.49115 * 214.35825 * 12 10 9 40 40 H 1.09006 * 110.48687 * 336.99977 * 12 10 9 41 41 H 1.08995 * 110.76226 * 279.62721 * 13 12 10 42 42 H 1.09006 * 110.91391 * 156.32924 * 13 12 10 43 43 H 0.97001 * 119.99907 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.02967 * 359.97438 * 24 10 9 45 45 H 1.08998 * 110.03110 * 121.38083 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.7212 1.2483 6 6 4.0795 0.7215 -1.2501 7 6 4.0723 2.8634 -0.0013 8 8 3.2841 3.7852 -0.0017 9 7 5.3973 3.1097 -0.0024 10 6 5.8856 4.4909 -0.0025 11 1 5.2052 5.1271 -0.5686 12 6 6.0114 5.0071 1.4458 13 6 7.4984 4.7673 1.8067 14 6 8.2296 5.1021 0.4830 15 1 8.3501 6.1801 0.3759 16 6 9.5687 4.4127 0.4313 17 1 9.7547 3.6493 -0.3098 18 6 10.5563 4.7564 1.3299 19 7 10.3295 5.6855 2.2326 20 14 12.2164 3.9024 1.2652 21 1 12.8416 4.1354 -0.0614 22 1 13.0957 4.4482 2.3302 23 1 12.0313 2.4441 1.4760 24 6 7.2961 4.5514 -0.6146 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 5.1705 0.7216 1.2481 33 1 3.7172 -0.3065 1.2483 34 1 3.7175 1.2350 2.1385 35 1 3.7162 -0.3062 -1.2501 36 1 3.7158 1.2353 -2.1399 37 1 5.1695 0.7219 -1.2508 38 1 6.0277 2.3725 -0.0025 39 1 5.7735 6.0697 1.4942 40 1 5.3610 4.4390 2.1111 41 1 7.6649 3.7274 2.0878 42 1 7.8180 5.4375 2.6048 43 1 11.0245 5.9276 2.8646 44 1 7.6174 3.5530 -0.9113 45 1 7.3002 5.2170 -1.4778 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593166759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:02 Heat of formation + Delta-G solvation = -97.318438 kcal Electronic energy + Delta-G solvation = -21255.489756 eV Core-core repulsion = 18270.399127 eV Total energy + Delta-G solvation = -2985.090629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38254 -39.05129 -37.42228 -35.26720 -34.02681 -32.97975 -29.97568 -28.81394 -28.24633 -27.37303 -25.91439 -24.52057 -22.23242 -21.15883 -20.91718 -19.78507 -18.51832 -17.67232 -17.12610 -16.61804 -16.31547 -16.04954 -15.51887 -15.44010 -15.06508 -14.57452 -14.15790 -13.92586 -13.89286 -13.56502 -13.29019 -13.09091 -12.94002 -12.76702 -12.67597 -12.58688 -12.50901 -12.39558 -12.17862 -11.94080 -11.80329 -11.66147 -11.54188 -11.44801 -11.29127 -11.07691 -10.82287 -10.54230 -10.42949 -9.93921 -8.08958 -6.18834 1.44690 1.45445 1.52833 1.70904 2.29712 2.46289 3.22154 3.65417 3.74716 3.90734 3.95964 4.02980 4.20726 4.24364 4.30625 4.37070 4.60345 4.68581 4.75205 4.76583 4.82450 4.84211 4.93460 4.96279 4.96681 4.99196 5.09013 5.10660 5.13398 5.18271 5.22259 5.25240 5.27622 5.39128 5.43607 5.49688 5.55302 5.66708 5.71623 5.90869 5.99840 6.38874 6.66551 6.92181 7.32898 7.48839 8.99799 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032386 B = 0.003983 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.376050 B = 7028.277506 C = 7373.045833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.076 4.076 5 C -0.141 4.141 6 C -0.140 4.140 7 C 0.514 3.486 8 O -0.590 6.590 9 N -0.706 5.706 10 C 0.150 3.850 11 H 0.071 0.929 12 C -0.125 4.125 13 C -0.087 4.087 14 C 0.040 3.960 15 H -0.001 1.001 16 C -0.527 4.527 17 H 0.060 0.940 18 C 0.010 3.990 19 N -0.922 5.922 20 Si 0.953 3.047 21 H -0.272 1.272 22 H -0.290 1.290 23 H -0.267 1.267 24 C -0.109 4.109 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.409 0.591 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.041 0.959 42 H 0.035 0.965 43 H 0.259 0.741 44 H 0.072 0.928 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.146 -14.033 -4.678 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.129 4.129 4 C -0.079 4.079 5 C -0.199 4.199 6 C -0.197 4.197 7 C 0.302 3.698 8 O -0.470 6.470 9 N -0.357 5.357 10 C 0.045 3.955 11 H 0.089 0.911 12 C -0.164 4.164 13 C -0.125 4.125 14 C 0.021 3.979 15 H 0.017 0.983 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.188 4.188 19 N -0.561 5.561 20 Si 0.779 3.221 21 H -0.197 1.197 22 H -0.216 1.216 23 H -0.192 1.192 24 C -0.147 4.147 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.245 0.755 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.601 -13.279 -4.547 20.253 hybrid contribution 1.359 0.173 0.361 1.417 sum -13.242 -13.107 -4.186 19.096 Atomic orbital electron populations 1.21777 0.95707 1.02115 1.01493 1.21660 0.95992 0.94936 1.03291 1.21390 0.91815 0.98063 1.01639 1.20833 0.97450 0.90173 0.99470 1.21943 1.01618 1.01577 0.94717 1.21936 1.01723 1.01527 0.94532 1.21315 0.81969 0.92288 0.74239 1.90638 1.56373 1.48049 1.51953 1.46190 1.07089 1.08575 1.73811 1.21441 0.95267 0.82910 0.95900 0.91070 1.22717 0.97387 1.00038 0.96226 1.22206 0.92202 0.98867 0.99255 1.19432 0.92798 0.94415 0.91246 0.98325 1.21523 0.98314 1.21061 1.15626 0.92195 1.25782 1.02060 0.95727 0.95264 1.70095 1.34693 1.31962 1.19335 0.85691 0.79745 0.79126 0.77561 1.19717 1.21608 1.19230 1.22418 0.92356 1.01617 0.98359 0.93362 0.93158 0.91459 0.90363 0.90648 0.93294 0.92934 0.91700 0.88638 0.93352 0.88747 0.92848 0.91478 0.75462 0.92311 0.92706 0.94036 0.94597 0.93250 0.90946 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 71.98 0.71 -1.43 16 2 C -0.12 -1.75 5.23 30.59 0.16 -1.59 16 3 C -0.09 -1.92 3.56 30.60 0.11 -1.82 16 4 C -0.08 -1.62 0.64 -52.93 -0.03 -1.65 16 5 C -0.14 -2.56 8.02 71.98 0.58 -1.98 16 6 C -0.14 -2.31 8.02 71.98 0.58 -1.73 16 7 C 0.51 15.62 6.48 87.66 0.57 16.18 16 8 O -0.59 -22.76 15.64 -3.04 -0.05 -22.81 16 9 N -0.71 -21.33 4.81 -439.10 -2.11 -23.44 16 10 C 0.15 5.40 3.25 45.72 0.15 5.55 16 11 H 0.07 2.67 7.56 -2.39 -0.02 2.65 16 12 C -0.13 -4.94 6.54 31.67 0.21 -4.73 16 13 C -0.09 -4.04 5.75 31.88 0.18 -3.86 16 14 C 0.04 1.94 2.72 -10.47 -0.03 1.91 16 15 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 16 C -0.53 -27.87 8.46 25.60 0.22 -27.66 16 17 H 0.06 3.03 7.54 -2.91 -0.02 3.01 16 18 C 0.01 0.56 5.35 84.65 0.45 1.01 16 19 N -0.92 -53.30 12.29 21.45 0.26 -53.04 16 20 Si 0.95 42.55 29.54 68.60 2.03 44.57 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 C -0.11 -4.24 6.13 31.32 0.19 -4.05 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.93 6.43 -2.39 -0.02 0.92 16 29 H 0.07 0.94 6.43 -2.39 -0.02 0.93 16 30 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 31 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 32 H 0.06 1.16 7.57 -2.39 -0.02 1.14 16 33 H 0.09 1.23 6.43 -2.39 -0.02 1.21 16 34 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.09 1.10 6.43 -2.39 -0.02 1.08 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.05 7.56 -2.39 -0.02 1.03 16 38 H 0.41 10.73 7.16 -92.71 -0.66 10.07 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.05 2.10 8.04 -2.38 -0.02 2.08 16 41 H 0.04 1.93 8.05 -2.39 -0.02 1.91 16 42 H 0.04 1.86 7.55 -2.38 -0.02 1.84 16 43 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.07 2.63 7.13 -2.39 -0.02 2.62 16 45 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -64.06 347.17 4.45 -59.61 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.28 Total: 20.93 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 4.04 Total: -25.82 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -1.85 Total: -76.48 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -64.06 4.45 -59.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593166759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.710 kcal (2) G-P(sol) polarization free energy of solvation -64.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds