Wall clock time and date at job start Mon Mar 30 2020 08:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 C 1.53003 * 109.47210 * 120.00002 * 2 1 3 5 5 C 1.52997 * 109.47109 * 174.99829 * 4 2 1 6 6 N 1.46504 * 109.46995 * 179.97438 * 5 4 2 7 7 C 1.34770 * 120.00101 * 269.99675 * 6 5 4 8 8 O 1.21286 * 120.00214 * 185.95311 * 7 6 5 9 9 C 1.50709 * 120.00177 * 5.95727 * 7 6 5 10 10 C 1.52992 * 109.47181 * 180.84936 * 9 7 6 11 11 C 1.53006 * 109.47124 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47180 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00206 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99785 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00236 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99928 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47182 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47263 * 120.00015 * 16 14 12 19 19 H 1.48507 * 109.47009 * 240.00218 * 16 14 12 20 20 C 1.46502 * 119.99866 * 90.00424 * 6 5 4 21 21 C 1.52997 * 117.49888 * 196.37024 * 20 6 5 22 22 C 1.52994 * 117.50196 * 127.70511 * 20 6 5 23 23 H 1.09001 * 109.46918 * 300.00204 * 1 2 3 24 24 H 1.08993 * 109.47243 * 59.99747 * 1 2 3 25 25 H 1.08995 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46918 * 239.99796 * 2 1 3 27 27 H 1.09001 * 109.47318 * 60.00042 * 3 2 1 28 28 H 1.09001 * 109.46814 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46982 * 299.99915 * 3 2 1 30 30 H 1.08998 * 109.47355 * 54.99432 * 4 2 1 31 31 H 1.09005 * 109.47150 * 294.99756 * 4 2 1 32 32 H 1.09006 * 109.47087 * 60.00405 * 5 4 2 33 33 H 1.09001 * 109.47515 * 299.99827 * 5 4 2 34 34 H 1.09002 * 109.47084 * 300.85648 * 9 7 6 35 35 H 1.09006 * 109.46706 * 60.85376 * 9 7 6 36 36 H 1.09002 * 109.47693 * 300.00339 * 10 9 7 37 37 H 1.09000 * 109.47271 * 60.00292 * 10 9 7 38 38 H 1.09000 * 109.47007 * 300.00080 * 11 10 9 39 39 H 1.09000 * 109.46908 * 59.99948 * 11 10 9 40 40 H 0.97006 * 119.99898 * 179.97438 * 15 14 12 41 41 H 1.09004 * 115.54786 * 342.03059 * 20 6 5 42 42 H 1.09010 * 117.49848 * 359.97438 * 21 20 6 43 43 H 1.08997 * 117.50379 * 145.01399 * 21 20 6 44 44 H 1.09000 * 117.50022 * 214.97704 * 22 20 6 45 45 H 1.09002 * 117.49753 * 359.97438 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1879 6 7 4.0532 -1.5212 2.3844 7 6 4.3739 -0.8144 3.4863 8 8 4.8791 -1.3711 4.4381 9 6 4.1046 0.6676 3.5358 10 6 4.5779 1.2273 4.8787 11 6 4.3039 2.7318 4.9293 12 6 4.7707 3.2832 6.2517 13 1 5.2177 2.6263 6.9833 14 6 4.6271 4.6264 6.5278 15 7 4.0824 5.4262 5.6373 16 14 5.2064 5.3102 8.1669 17 1 5.7783 4.2121 8.9870 18 1 6.2445 6.3457 7.9322 19 1 4.0562 5.9160 8.8848 20 6 4.1932 -2.9795 2.3831 21 6 4.3308 -3.6772 3.7377 22 6 5.5428 -3.5601 2.8100 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6054 -1.7198 1.2953 31 1 1.7517 -0.1583 2.1370 32 1 3.9995 0.1675 1.1421 33 1 3.8532 -1.3940 0.3002 34 1 4.6419 1.1617 2.7264 35 1 3.0351 0.8464 3.4243 36 1 4.0406 0.7331 5.6881 37 1 5.6473 1.0485 4.9903 38 1 4.8410 3.2263 4.1199 39 1 3.2344 2.9102 4.8179 40 1 3.9811 6.3712 5.8318 41 1 3.6447 -3.5037 1.6005 42 1 4.3177 -3.0511 4.6300 43 1 3.8733 -4.6605 3.8463 44 1 5.8821 -4.4664 2.3085 45 1 6.3267 -2.8570 3.0914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593957512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:33 Heat of formation + Delta-G solvation = -35.786202 kcal Electronic energy + Delta-G solvation = -20913.399206 eV Core-core repulsion = 17930.976814 eV Total energy + Delta-G solvation = -2982.422391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.30487 -37.18426 -36.39056 -34.28805 -33.79570 -31.87045 -28.93224 -27.86620 -27.24903 -24.35650 -23.55421 -22.36868 -22.24201 -20.19253 -19.98379 -18.72467 -17.03222 -16.19052 -16.10359 -15.50191 -15.16617 -14.55341 -14.37359 -14.13646 -13.92293 -13.63418 -13.25134 -13.17900 -12.61550 -12.36343 -12.20560 -12.11890 -11.78253 -11.66790 -11.46742 -11.31885 -11.06763 -10.84592 -10.83655 -10.77275 -10.60441 -10.53470 -10.49204 -10.29185 -9.64407 -9.41990 -9.15262 -8.92281 -8.32049 -8.30315 -5.96514 -3.97628 2.82849 2.96910 3.34481 3.41800 3.47673 3.96569 4.49640 4.57281 4.65970 4.75444 4.80302 4.91271 5.00483 5.12438 5.22192 5.30460 5.38987 5.40007 5.48995 5.54861 5.58638 5.63692 5.71386 5.75589 5.78829 5.80261 5.87827 5.90501 6.04657 6.10966 6.18562 6.26268 6.34249 6.42577 6.74219 6.81343 6.95820 7.17847 7.50024 7.72691 7.85315 8.04352 8.45265 8.48716 9.09619 9.66369 11.15004 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015013 B = 0.004683 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.575306 B = 5977.540022 C = 7557.228167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.155 4.155 4 C -0.136 4.136 5 C 0.112 3.888 6 N -0.594 5.594 7 C 0.515 3.485 8 O -0.529 6.529 9 C -0.137 4.137 10 C -0.095 4.095 11 C 0.021 3.979 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.070 3.930 21 C -0.193 4.193 22 C -0.189 4.189 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.122 0.878 42 H 0.138 0.862 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 -14.836 -14.393 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.212 4.212 4 C -0.175 4.175 5 C -0.011 4.011 6 N -0.326 5.326 7 C 0.306 3.694 8 O -0.406 6.406 9 C -0.177 4.177 10 C -0.133 4.133 11 C -0.016 4.016 12 C -0.555 4.555 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.034 4.034 21 C -0.230 4.230 22 C -0.227 4.227 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.140 0.860 42 H 0.155 0.845 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.521 -14.932 -13.909 20.901 hybrid contribution 0.198 0.442 0.656 0.815 sum -4.323 -14.490 -13.254 20.107 Atomic orbital electron populations 1.21834 0.95171 1.01489 1.01995 1.21055 0.95850 0.96606 0.97665 1.21950 1.01306 0.95608 1.02321 1.22137 0.95430 1.01062 0.98836 1.21701 0.94259 0.98213 0.86950 1.47504 1.66004 1.05081 1.14027 1.21302 0.76639 0.90362 0.81147 1.90512 1.42436 1.71215 1.36423 1.21926 1.03143 0.89928 1.02690 1.21452 1.00493 0.98822 0.92511 1.19126 0.96872 0.88523 0.97086 1.21309 1.39427 0.93313 1.01414 0.92558 1.25010 0.95397 0.97184 0.96879 1.69971 1.44804 1.04496 1.34457 0.86557 0.78421 0.79008 0.84176 1.19684 1.21046 1.21052 1.21595 1.00914 0.80786 1.00127 1.23825 1.00952 1.01278 0.96973 1.23233 0.92618 1.02547 1.04340 0.92414 0.92731 0.92956 0.91349 0.91943 0.92323 0.92771 0.91737 0.91015 0.89512 0.90563 0.89602 0.89362 0.92732 0.92782 0.96658 0.96647 0.93156 0.86014 0.84453 0.89670 0.89090 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 2 C -0.09 -0.76 2.92 -90.62 -0.26 -1.03 16 3 C -0.15 -1.41 8.95 37.16 0.33 -1.08 16 4 C -0.14 -1.27 5.01 -26.73 -0.13 -1.40 16 5 C 0.11 1.10 4.96 -4.04 -0.02 1.08 16 6 N -0.59 -7.67 2.84 -166.10 -0.47 -8.14 16 7 C 0.51 8.50 7.46 -10.98 -0.08 8.42 16 8 O -0.53 -10.32 11.73 5.55 0.07 -10.25 16 9 C -0.14 -2.33 4.42 -27.88 -0.12 -2.45 16 10 C -0.09 -2.07 4.44 -26.73 -0.12 -2.18 16 11 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 12 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 13 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 16 Si 0.89 22.10 29.54 -169.99 -5.02 17.07 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.07 0.83 6.60 -67.93 -0.45 0.38 16 21 C -0.19 -2.51 9.63 -26.69 -0.26 -2.77 16 22 C -0.19 -2.31 9.88 -26.69 -0.26 -2.58 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.79 6.92 -51.93 -0.36 0.43 16 32 H 0.09 0.88 4.89 -51.93 -0.25 0.62 16 33 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 34 H 0.09 1.34 7.18 -51.93 -0.37 0.97 16 35 H 0.09 1.40 6.92 -51.93 -0.36 1.04 16 36 H 0.05 1.24 8.09 -51.93 -0.42 0.82 16 37 H 0.05 1.23 8.11 -51.93 -0.42 0.81 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.14 2.26 5.22 -52.11 -0.27 1.99 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 1.42 7.60 -51.93 -0.39 1.03 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -31.90 355.05 -9.16 -41.05 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.23 Total: -0.90 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.59 Total: -17.83 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.26 Total: -34.50 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.90 -9.16 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593957512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.267 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds