Wall clock time and date at job start Mon Mar 30 2020 08:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 C 1.53003 * 109.47210 * 120.00002 * 2 1 3 5 5 C 1.52997 * 109.47109 * 174.99829 * 4 2 1 6 6 N 1.46504 * 109.46995 * 179.97438 * 5 4 2 7 7 C 1.34770 * 120.00101 * 269.99675 * 6 5 4 8 8 O 1.21286 * 120.00214 * 185.95311 * 7 6 5 9 9 C 1.50709 * 120.00177 * 5.95727 * 7 6 5 10 10 C 1.52992 * 109.47181 * 180.84936 * 9 7 6 11 11 C 1.53006 * 109.47124 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47180 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00206 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99785 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00236 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99928 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47182 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47263 * 120.00015 * 16 14 12 19 19 H 1.48507 * 109.47009 * 240.00218 * 16 14 12 20 20 C 1.46502 * 119.99866 * 90.00424 * 6 5 4 21 21 C 1.52997 * 117.49888 * 196.37024 * 20 6 5 22 22 C 1.52994 * 117.50196 * 127.70511 * 20 6 5 23 23 H 1.09001 * 109.46918 * 300.00204 * 1 2 3 24 24 H 1.08993 * 109.47243 * 59.99747 * 1 2 3 25 25 H 1.08995 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46918 * 239.99796 * 2 1 3 27 27 H 1.09001 * 109.47318 * 60.00042 * 3 2 1 28 28 H 1.09001 * 109.46814 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46982 * 299.99915 * 3 2 1 30 30 H 1.08998 * 109.47355 * 54.99432 * 4 2 1 31 31 H 1.09005 * 109.47150 * 294.99756 * 4 2 1 32 32 H 1.09006 * 109.47087 * 60.00405 * 5 4 2 33 33 H 1.09001 * 109.47515 * 299.99827 * 5 4 2 34 34 H 1.09002 * 109.47084 * 300.85648 * 9 7 6 35 35 H 1.09006 * 109.46706 * 60.85376 * 9 7 6 36 36 H 1.09002 * 109.47693 * 300.00339 * 10 9 7 37 37 H 1.09000 * 109.47271 * 60.00292 * 10 9 7 38 38 H 1.09000 * 109.47007 * 300.00080 * 11 10 9 39 39 H 1.09000 * 109.46908 * 59.99948 * 11 10 9 40 40 H 0.97006 * 119.99898 * 179.97438 * 15 14 12 41 41 H 1.09004 * 115.54786 * 342.03059 * 20 6 5 42 42 H 1.09010 * 117.49848 * 359.97438 * 21 20 6 43 43 H 1.08997 * 117.50379 * 145.01399 * 21 20 6 44 44 H 1.09000 * 117.50022 * 214.97704 * 22 20 6 45 45 H 1.09002 * 117.49753 * 359.97438 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1879 6 7 4.0532 -1.5212 2.3844 7 6 4.3739 -0.8144 3.4863 8 8 4.8791 -1.3711 4.4381 9 6 4.1046 0.6676 3.5358 10 6 4.5779 1.2273 4.8787 11 6 4.3039 2.7318 4.9293 12 6 4.7707 3.2832 6.2517 13 1 5.2177 2.6263 6.9833 14 6 4.6271 4.6264 6.5278 15 7 4.0824 5.4262 5.6373 16 14 5.2064 5.3102 8.1669 17 1 5.7783 4.2121 8.9870 18 1 6.2445 6.3457 7.9322 19 1 4.0562 5.9160 8.8848 20 6 4.1932 -2.9795 2.3831 21 6 4.3308 -3.6772 3.7377 22 6 5.5428 -3.5601 2.8100 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6054 -1.7198 1.2953 31 1 1.7517 -0.1583 2.1370 32 1 3.9995 0.1675 1.1421 33 1 3.8532 -1.3940 0.3002 34 1 4.6419 1.1617 2.7264 35 1 3.0351 0.8464 3.4243 36 1 4.0406 0.7331 5.6881 37 1 5.6473 1.0485 4.9903 38 1 4.8410 3.2263 4.1199 39 1 3.2344 2.9102 4.8179 40 1 3.9811 6.3712 5.8318 41 1 3.6447 -3.5037 1.6005 42 1 4.3177 -3.0511 4.6300 43 1 3.8733 -4.6605 3.8463 44 1 5.8821 -4.4664 2.3085 45 1 6.3267 -2.8570 3.0914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593957512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:33 Heat of formation + Delta-G solvation = -52.522493 kcal Electronic energy + Delta-G solvation = -20914.124946 eV Core-core repulsion = 17930.976814 eV Total energy + Delta-G solvation = -2983.148131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48340 -38.08635 -37.47425 -36.03748 -35.00024 -33.83034 -29.96086 -29.54300 -27.94992 -26.16369 -24.42810 -23.73799 -23.24792 -21.83736 -20.81211 -19.97533 -18.50991 -17.92602 -17.23500 -16.78885 -16.49873 -16.01466 -15.50022 -15.26763 -15.07578 -14.60243 -14.52560 -14.24270 -14.09894 -13.71663 -13.51689 -13.28833 -13.12584 -12.86579 -12.71630 -12.52163 -12.43888 -12.33687 -12.13863 -12.06956 -11.62407 -11.58599 -11.49119 -11.43270 -11.32757 -11.23507 -11.19555 -10.55720 -10.36018 -9.37494 -8.21148 -6.31152 1.38495 1.38770 1.52634 1.54616 1.92135 2.40822 2.99978 3.11814 3.51695 3.88773 3.95905 4.00474 4.09248 4.11005 4.13792 4.21740 4.22137 4.32195 4.54940 4.65435 4.67407 4.76812 4.83399 4.85608 4.88023 4.93126 4.97664 5.06437 5.07131 5.11278 5.17598 5.19110 5.22632 5.38945 5.40159 5.50849 5.52083 5.59509 5.72766 5.81022 5.84855 6.25340 6.37954 6.83830 7.20734 7.37600 8.90587 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015013 B = 0.004683 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.575306 B = 5977.540022 C = 7557.228167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.157 4.157 4 C -0.130 4.130 5 C 0.106 3.894 6 N -0.586 5.586 7 C 0.511 3.489 8 O -0.566 6.566 9 C -0.127 4.127 10 C -0.080 4.080 11 C 0.028 3.972 12 C -0.547 4.547 13 H 0.050 0.950 14 C 0.005 3.995 15 N -0.928 5.928 16 Si 0.961 3.039 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.275 1.275 20 C 0.076 3.924 21 C -0.207 4.207 22 C -0.186 4.186 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.001 0.999 39 H -0.001 1.001 40 H 0.265 0.735 41 H 0.164 0.836 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.122 0.878 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 -16.047 -15.962 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 C -0.215 4.215 4 C -0.169 4.169 5 C -0.015 4.015 6 N -0.316 5.316 7 C 0.302 3.698 8 O -0.446 6.446 9 C -0.167 4.167 10 C -0.118 4.118 11 C -0.009 4.009 12 C -0.585 4.585 13 H 0.068 0.932 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.028 4.028 21 C -0.245 4.245 22 C -0.225 4.225 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.074 0.926 41 H 0.181 0.819 42 H 0.117 0.883 43 H 0.128 0.872 44 H 0.140 0.860 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.811 -16.152 -15.518 22.909 hybrid contribution 0.262 0.823 1.109 1.406 sum -4.550 -15.328 -14.408 21.523 Atomic orbital electron populations 1.21840 0.95088 1.01985 1.01645 1.21022 0.95860 0.95790 0.97813 1.21978 1.01457 0.96387 1.01653 1.22068 0.94964 1.01359 0.98480 1.21968 0.94532 0.98413 0.86595 1.47518 1.64515 1.05917 1.13632 1.21084 0.76850 0.90038 0.81859 1.90535 1.44347 1.71679 1.38071 1.21726 1.03850 0.91002 1.00118 1.21151 0.99470 0.96128 0.95081 1.18995 0.95330 0.91031 0.95527 1.21692 1.40151 0.94036 1.02591 0.93173 1.25885 0.95229 0.97396 1.00805 1.70071 1.45340 1.05014 1.36419 0.85461 0.78284 0.78314 0.79382 1.19294 1.19970 1.20019 1.21997 1.00775 0.79788 1.00210 1.23701 1.02438 1.02090 0.96239 1.23217 0.91820 1.03111 1.04327 0.93877 0.92033 0.92028 0.89225 0.94056 0.92118 0.92032 0.90762 0.93340 0.89841 0.87364 0.88026 0.88246 0.94233 0.94160 0.98112 0.98241 0.92646 0.81898 0.88309 0.87190 0.86025 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.19 71.98 0.66 -1.44 16 2 C -0.09 -1.20 2.92 -10.79 -0.03 -1.23 16 3 C -0.16 -2.68 8.95 71.98 0.64 -2.04 16 4 C -0.13 -2.14 5.01 30.59 0.15 -1.99 16 5 C 0.11 1.82 4.96 86.38 0.43 2.25 16 6 N -0.59 -14.15 2.84 -797.82 -2.26 -16.41 16 7 C 0.51 17.02 7.46 87.66 0.65 17.68 16 8 O -0.57 -22.93 11.73 -3.05 -0.04 -22.97 16 9 C -0.13 -4.40 4.42 29.85 0.13 -4.27 16 10 C -0.08 -3.65 4.44 30.59 0.14 -3.51 16 11 C 0.03 1.53 4.97 29.85 0.15 1.68 16 12 C -0.55 -32.64 9.11 25.60 0.23 -32.41 16 13 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 14 C 0.00 0.29 5.46 84.66 0.46 0.75 16 15 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 16 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 C 0.08 1.58 6.60 44.99 0.30 1.88 16 21 C -0.21 -5.18 9.63 30.62 0.29 -4.88 16 22 C -0.19 -4.26 9.88 30.62 0.30 -3.96 16 23 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.99 6.57 -2.39 -0.02 0.98 16 29 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.03 6.92 -2.38 -0.02 1.02 16 32 H 0.08 1.52 4.89 -2.38 -0.01 1.51 16 33 H 0.11 1.25 8.07 -2.39 -0.02 1.23 16 34 H 0.10 3.17 7.18 -2.39 -0.02 3.15 16 35 H 0.10 3.20 6.92 -2.38 -0.02 3.19 16 36 H 0.04 1.88 8.09 -2.39 -0.02 1.86 16 37 H 0.04 1.91 8.11 -2.39 -0.02 1.89 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 41 H 0.16 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.10 3.37 5.22 -5.39 -0.03 3.34 16 43 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 1.93 7.60 -2.39 -0.02 1.91 16 Total: -1.00 -71.08 355.05 5.44 -65.64 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.91 Total: 14.01 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 4.52 Total: -31.51 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -1.98 Total: -72.82 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.04 Total: -22.97 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.08 5.44 -65.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593957512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.114 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds