Wall clock time and date at job start Mon Mar 30 2020 08:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47183 * 2 1 4 4 C 1.52997 * 109.47416 * 185.00346 * 3 2 1 5 5 C 1.52995 * 109.47008 * 178.92238 * 4 3 2 6 6 N 1.46501 * 109.47145 * 64.99625 * 3 2 1 7 7 C 1.34768 * 120.00437 * 234.23828 * 6 3 2 8 8 O 1.21283 * 120.00079 * 354.60756 * 7 6 3 9 9 C 1.50700 * 120.00149 * 174.60330 * 7 6 3 10 10 C 1.53005 * 109.47271 * 186.66971 * 9 7 6 11 11 C 1.52995 * 109.47162 * 180.02562 * 10 9 7 12 12 C 1.50709 * 109.47074 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00000 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00261 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99934 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46942 * 90.00492 * 16 14 12 18 18 H 1.48500 * 109.47066 * 210.00198 * 16 14 12 19 19 H 1.48494 * 109.47153 * 330.00407 * 16 14 12 20 20 C 1.46504 * 119.99710 * 54.23825 * 6 3 2 21 21 C 1.53001 * 117.49787 * 133.10406 * 20 6 3 22 22 C 1.53002 * 117.49397 * 64.48231 * 20 6 3 23 23 H 1.09007 * 109.47013 * 59.99829 * 1 2 3 24 24 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47163 * 299.99889 * 1 2 3 26 26 H 1.08995 * 109.46801 * 119.99832 * 2 1 3 27 27 H 1.08996 * 109.47163 * 240.00111 * 2 1 3 28 28 H 1.09000 * 109.46823 * 305.00110 * 3 2 1 29 29 H 1.09003 * 109.46481 * 298.92398 * 4 3 2 30 30 H 1.08993 * 109.47205 * 58.91723 * 4 3 2 31 31 H 1.09005 * 109.46603 * 179.97438 * 5 4 3 32 32 H 1.08991 * 109.47461 * 299.99135 * 5 4 3 33 33 H 1.08999 * 109.47302 * 60.00060 * 5 4 3 34 34 H 1.09000 * 109.47134 * 306.66934 * 9 7 6 35 35 H 1.09002 * 109.47243 * 66.67096 * 9 7 6 36 36 H 1.09000 * 109.47011 * 300.00039 * 10 9 7 37 37 H 1.09002 * 109.46885 * 59.99905 * 10 9 7 38 38 H 1.09000 * 109.47061 * 299.99851 * 11 10 9 39 39 H 1.08994 * 109.47548 * 59.99790 * 11 10 9 40 40 H 0.97001 * 120.00809 * 179.97438 * 15 14 12 41 41 H 1.08996 * 115.55005 * 278.81603 * 20 6 3 42 42 H 1.09008 * 117.49464 * 0.02562 * 21 20 6 43 43 H 1.08997 * 117.50049 * 145.02186 * 21 20 6 44 44 H 1.08999 * 117.49781 * 214.97406 * 22 20 6 45 45 H 1.09001 * 117.50194 * 359.97438 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4444 -0.1258 5 6 4.0725 2.8874 -0.1528 6 7 1.6524 2.0975 1.2518 7 6 0.9699 3.2592 1.2213 8 8 0.7615 3.8125 0.1623 9 6 0.4654 3.8706 2.5030 10 6 -0.4099 5.0832 2.1797 11 6 -0.9215 5.7043 3.4809 12 6 -1.7842 6.8983 3.1624 13 1 -1.9505 7.1856 2.1347 14 6 -2.3602 7.6245 4.1831 15 7 -3.1135 8.6661 3.9052 16 14 -2.0720 7.1280 5.9607 17 1 -0.8672 7.8240 6.4799 18 1 -3.2528 7.5061 6.7780 19 1 -1.8667 5.6593 6.0374 20 6 2.0068 1.4897 2.5368 21 6 2.6191 2.3995 3.6037 22 6 3.4939 1.3753 2.8779 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6054 1.9815 -0.8418 29 1 4.0002 0.9219 0.7260 30 1 3.8540 0.9402 -1.0478 31 1 5.1589 2.8887 -0.2420 32 1 3.6372 3.4099 -1.0046 33 1 3.7834 3.3917 0.7693 34 1 -0.1224 3.1338 3.0503 35 1 1.3119 4.1860 3.1130 36 1 0.1779 5.8201 1.6323 37 1 -1.2564 4.7679 1.5697 38 1 -1.5092 4.9677 4.0286 39 1 -0.0748 6.0197 4.0906 40 1 -3.5191 9.1768 4.6232 41 1 1.3498 0.6885 2.8749 42 1 2.7579 3.4504 3.3495 43 1 2.3649 2.1970 4.6441 44 1 3.8152 0.4990 3.4409 45 1 4.2086 1.7518 2.1460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593963615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:38 Heat of formation + Delta-G solvation = -28.785564 kcal Electronic energy + Delta-G solvation = -21493.180822 eV Core-core repulsion = 18511.062002 eV Total energy + Delta-G solvation = -2982.118821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.50514 -37.52046 -35.96674 -34.15793 -32.40751 -32.05894 -31.78069 -28.49825 -26.47507 -24.02288 -22.91077 -22.65678 -22.02101 -20.99378 -19.75361 -18.96773 -16.89243 -16.64966 -16.48110 -15.64004 -14.90226 -14.67483 -14.33955 -14.17399 -14.02954 -13.79093 -13.32671 -13.10500 -12.75676 -12.60669 -12.25803 -11.97393 -11.87036 -11.71150 -11.42265 -11.34776 -11.25909 -11.03276 -10.89505 -10.83353 -10.68462 -10.60181 -10.44552 -9.93694 -9.70868 -9.64491 -9.29660 -9.08381 -8.62352 -8.48478 -5.98150 -3.95636 2.88111 2.94365 3.33087 3.40113 3.43272 3.48667 4.42791 4.49339 4.57882 4.64277 4.69378 4.85114 4.95194 5.06545 5.10319 5.24002 5.30358 5.35255 5.38264 5.49406 5.56788 5.64705 5.66941 5.71371 5.75968 5.79593 5.82526 5.85211 5.88235 5.92682 6.05058 6.16572 6.21865 6.26950 6.60922 6.62132 6.76094 6.97069 7.40705 7.49987 7.51188 7.85757 8.43983 8.62431 9.08832 9.64110 11.15655 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024980 B = 0.004406 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.648418 B = 6353.679506 C = 6599.296090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.141 3.859 4 C -0.141 4.141 5 C -0.149 4.149 6 N -0.588 5.588 7 C 0.519 3.481 8 O -0.533 6.533 9 C -0.143 4.143 10 C -0.088 4.088 11 C -0.013 4.013 12 C -0.517 4.517 13 H 0.072 0.928 14 C 0.064 3.936 15 N -0.905 5.905 16 Si 0.880 3.120 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.266 1.266 20 C 0.070 3.930 21 C -0.180 4.180 22 C -0.190 4.190 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.014 0.986 39 H 0.010 0.990 40 H 0.262 0.738 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.117 -20.701 -3.270 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C 0.038 3.962 4 C -0.179 4.179 5 C -0.207 4.207 6 N -0.322 5.322 7 C 0.309 3.691 8 O -0.408 6.408 9 C -0.183 4.183 10 C -0.126 4.126 11 C -0.050 4.050 12 C -0.555 4.555 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.035 4.035 21 C -0.217 4.217 22 C -0.227 4.227 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.118 0.882 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.871 -20.244 -3.781 25.402 hybrid contribution 0.085 -0.217 1.075 1.100 sum 14.956 -20.461 -2.706 25.489 Atomic orbital electron populations 1.21724 0.95356 1.01200 1.02473 1.21829 0.96632 0.96053 1.02241 1.21125 0.94261 0.93160 0.87616 1.22092 0.95517 0.97918 1.02401 1.21719 1.00023 0.96357 1.02560 1.47513 1.56672 1.23300 1.04745 1.21146 0.76421 0.79415 0.92128 1.90675 1.56876 1.60472 1.32801 1.22101 1.01599 1.00054 0.94546 1.21284 0.97774 0.93996 0.99572 1.19590 0.95886 0.96319 0.93254 1.21174 1.28747 1.10338 0.95285 0.90980 1.25045 0.94794 0.94724 0.99048 1.69922 1.33299 1.18682 1.32556 0.86771 0.77704 0.79467 0.85277 1.20353 1.21471 1.19036 1.21505 0.95710 1.00422 0.85855 1.23499 1.03007 0.97631 0.97555 1.23577 0.93621 1.01908 1.03640 0.92675 0.92948 0.92514 0.91609 0.91218 0.88325 0.90777 0.91403 0.93108 0.92419 0.92732 0.89673 0.88876 0.92135 0.92407 0.96742 0.97178 0.92825 0.86777 0.87587 0.87444 0.88218 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.80 37.16 0.36 -1.13 16 2 C -0.13 -1.13 5.29 -26.73 -0.14 -1.27 16 3 C 0.14 1.53 2.05 -67.93 -0.14 1.39 16 4 C -0.14 -1.27 4.93 -26.74 -0.13 -1.40 16 5 C -0.15 -1.58 9.14 37.15 0.34 -1.24 16 6 N -0.59 -7.00 1.46 -158.58 -0.23 -7.23 16 7 C 0.52 8.28 7.31 -10.99 -0.08 8.20 16 8 O -0.53 -10.52 15.34 5.55 0.09 -10.44 16 9 C -0.14 -2.33 4.01 -27.88 -0.11 -2.44 16 10 C -0.09 -1.88 4.47 -26.73 -0.12 -2.00 16 11 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 12 C -0.52 -15.28 9.66 -34.44 -0.33 -15.62 16 13 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 14 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.91 -28.62 13.96 55.43 0.77 -27.84 16 16 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 20 C 0.07 0.65 4.54 -67.93 -0.31 0.34 16 21 C -0.18 -1.62 8.52 -26.73 -0.23 -1.85 16 22 C -0.19 -1.45 8.94 -26.73 -0.24 -1.69 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 26 H 0.07 0.52 7.36 -51.93 -0.38 0.14 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.10 1.32 6.95 -51.93 -0.36 0.96 16 29 H 0.07 0.59 5.10 -51.93 -0.26 0.32 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.66 7.05 -51.93 -0.37 0.29 16 34 H 0.08 1.26 8.01 -51.93 -0.42 0.85 16 35 H 0.09 1.36 5.26 -51.93 -0.27 1.09 16 36 H 0.06 1.37 8.03 -51.93 -0.42 0.95 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 39 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.11 1.12 6.10 -51.92 -0.32 0.80 16 43 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.11 0.88 4.85 -51.93 -0.25 0.63 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -33.07 346.11 -8.20 -41.26 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -8.03 Total: -0.90 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -1.34 Total: -17.31 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.54 Total: -35.07 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.07 -8.20 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593963615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.476 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds