Wall clock time and date at job start Mon Mar 30 2020 08:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47183 * 2 1 4 4 C 1.52997 * 109.47416 * 185.00346 * 3 2 1 5 5 C 1.52995 * 109.47008 * 178.92238 * 4 3 2 6 6 N 1.46501 * 109.47145 * 64.99625 * 3 2 1 7 7 C 1.34768 * 120.00437 * 234.23828 * 6 3 2 8 8 O 1.21283 * 120.00079 * 354.60756 * 7 6 3 9 9 C 1.50700 * 120.00149 * 174.60330 * 7 6 3 10 10 C 1.53005 * 109.47271 * 186.66971 * 9 7 6 11 11 C 1.52995 * 109.47162 * 180.02562 * 10 9 7 12 12 C 1.50709 * 109.47074 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00000 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00261 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99934 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46942 * 90.00492 * 16 14 12 18 18 H 1.48500 * 109.47066 * 210.00198 * 16 14 12 19 19 H 1.48494 * 109.47153 * 330.00407 * 16 14 12 20 20 C 1.46504 * 119.99710 * 54.23825 * 6 3 2 21 21 C 1.53001 * 117.49787 * 133.10406 * 20 6 3 22 22 C 1.53002 * 117.49397 * 64.48231 * 20 6 3 23 23 H 1.09007 * 109.47013 * 59.99829 * 1 2 3 24 24 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47163 * 299.99889 * 1 2 3 26 26 H 1.08995 * 109.46801 * 119.99832 * 2 1 3 27 27 H 1.08996 * 109.47163 * 240.00111 * 2 1 3 28 28 H 1.09000 * 109.46823 * 305.00110 * 3 2 1 29 29 H 1.09003 * 109.46481 * 298.92398 * 4 3 2 30 30 H 1.08993 * 109.47205 * 58.91723 * 4 3 2 31 31 H 1.09005 * 109.46603 * 179.97438 * 5 4 3 32 32 H 1.08991 * 109.47461 * 299.99135 * 5 4 3 33 33 H 1.08999 * 109.47302 * 60.00060 * 5 4 3 34 34 H 1.09000 * 109.47134 * 306.66934 * 9 7 6 35 35 H 1.09002 * 109.47243 * 66.67096 * 9 7 6 36 36 H 1.09000 * 109.47011 * 300.00039 * 10 9 7 37 37 H 1.09002 * 109.46885 * 59.99905 * 10 9 7 38 38 H 1.09000 * 109.47061 * 299.99851 * 11 10 9 39 39 H 1.08994 * 109.47548 * 59.99790 * 11 10 9 40 40 H 0.97001 * 120.00809 * 179.97438 * 15 14 12 41 41 H 1.08996 * 115.55005 * 278.81603 * 20 6 3 42 42 H 1.09008 * 117.49464 * 0.02562 * 21 20 6 43 43 H 1.08997 * 117.50049 * 145.02186 * 21 20 6 44 44 H 1.08999 * 117.49781 * 214.97406 * 22 20 6 45 45 H 1.09001 * 117.50194 * 359.97438 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4444 -0.1258 5 6 4.0725 2.8874 -0.1528 6 7 1.6524 2.0975 1.2518 7 6 0.9699 3.2592 1.2213 8 8 0.7615 3.8125 0.1623 9 6 0.4654 3.8706 2.5030 10 6 -0.4099 5.0832 2.1797 11 6 -0.9215 5.7043 3.4809 12 6 -1.7842 6.8983 3.1624 13 1 -1.9505 7.1856 2.1347 14 6 -2.3602 7.6245 4.1831 15 7 -3.1135 8.6661 3.9052 16 14 -2.0720 7.1280 5.9607 17 1 -0.8672 7.8240 6.4799 18 1 -3.2528 7.5061 6.7780 19 1 -1.8667 5.6593 6.0374 20 6 2.0068 1.4897 2.5368 21 6 2.6191 2.3995 3.6037 22 6 3.4939 1.3753 2.8779 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6054 1.9815 -0.8418 29 1 4.0002 0.9219 0.7260 30 1 3.8540 0.9402 -1.0478 31 1 5.1589 2.8887 -0.2420 32 1 3.6372 3.4099 -1.0046 33 1 3.7834 3.3917 0.7693 34 1 -0.1224 3.1338 3.0503 35 1 1.3119 4.1860 3.1130 36 1 0.1779 5.8201 1.6323 37 1 -1.2564 4.7679 1.5697 38 1 -1.5092 4.9677 4.0286 39 1 -0.0748 6.0197 4.0906 40 1 -3.5191 9.1768 4.6232 41 1 1.3498 0.6885 2.8749 42 1 2.7579 3.4504 3.3495 43 1 2.3649 2.1970 4.6441 44 1 3.8152 0.4990 3.4409 45 1 4.2086 1.7518 2.1460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593963615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:37 Heat of formation + Delta-G solvation = -47.677372 kcal Electronic energy + Delta-G solvation = -21494.000033 eV Core-core repulsion = 18511.062002 eV Total energy + Delta-G solvation = -2982.938031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53714 -38.61709 -36.83172 -35.95497 -34.09233 -33.20393 -32.80304 -30.24093 -27.49841 -25.67260 -23.83615 -23.38739 -22.78055 -22.38654 -21.28721 -19.89626 -18.89407 -17.94052 -17.43691 -16.78621 -16.23395 -16.05371 -15.53010 -15.24718 -14.96561 -14.80613 -14.67016 -14.61827 -14.11689 -13.81545 -13.60503 -13.27024 -13.06550 -12.69567 -12.58307 -12.51169 -12.27328 -12.17754 -12.03676 -11.84668 -11.76576 -11.68634 -11.59329 -11.43153 -11.41565 -11.28063 -11.13847 -10.75472 -10.55222 -9.58493 -8.28070 -6.33960 1.37778 1.41620 1.53862 1.65724 1.97778 2.38918 2.80372 3.06881 3.51935 3.80136 3.93342 3.98205 4.06879 4.12482 4.15446 4.17498 4.30539 4.32621 4.45633 4.53894 4.63875 4.75439 4.80084 4.85587 4.90669 4.95653 4.97969 5.02670 5.04255 5.06418 5.07193 5.11595 5.12305 5.26816 5.29246 5.37965 5.44999 5.52057 5.58160 5.66974 5.73572 6.29827 6.44875 6.74255 7.25972 7.30600 8.89743 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024980 B = 0.004406 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.648418 B = 6353.679506 C = 6599.296090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.136 3.864 4 C -0.133 4.133 5 C -0.147 4.147 6 N -0.574 5.574 7 C 0.515 3.485 8 O -0.586 6.586 9 C -0.132 4.132 10 C -0.080 4.080 11 C -0.006 4.006 12 C -0.540 4.540 13 H 0.018 0.982 14 C -0.002 4.002 15 N -0.957 5.957 16 Si 0.961 3.039 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.236 1.236 20 C 0.051 3.949 21 C -0.188 4.188 22 C -0.167 4.167 23 H 0.034 0.966 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.036 0.964 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.033 0.967 37 H 0.032 0.968 38 H 0.030 0.970 39 H 0.028 0.972 40 H 0.267 0.733 41 H 0.134 0.866 42 H 0.087 0.913 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.425 -24.347 -0.404 29.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.033 3.967 4 C -0.171 4.171 5 C -0.205 4.205 6 N -0.306 5.306 7 C 0.305 3.695 8 O -0.466 6.466 9 C -0.171 4.171 10 C -0.118 4.118 11 C -0.043 4.043 12 C -0.578 4.578 13 H 0.036 0.964 14 C -0.198 4.198 15 N -0.598 5.598 16 Si 0.783 3.217 17 H -0.188 1.188 18 H -0.211 1.211 19 H -0.159 1.159 20 C -0.052 4.052 21 C -0.225 4.225 22 C -0.205 4.205 23 H 0.053 0.947 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.152 0.848 42 H 0.105 0.895 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.215 -23.946 -0.915 29.507 hybrid contribution -0.646 0.967 0.062 1.164 sum 16.570 -22.979 -0.853 28.343 Atomic orbital electron populations 1.21721 0.96548 1.01793 1.00690 1.21794 0.95437 0.94457 1.04104 1.21254 0.95589 0.93934 0.85920 1.22068 0.93763 0.96994 1.04229 1.21698 1.01125 0.97177 1.00482 1.47454 1.54797 1.21763 1.06612 1.21084 0.76806 0.80504 0.91131 1.90661 1.59304 1.62355 1.34314 1.21951 1.01651 0.98205 0.95275 1.21057 0.97467 0.95635 0.97654 1.19512 0.95575 0.94476 0.94758 1.21539 1.30334 1.12785 0.93176 0.96406 1.26188 0.94011 0.94317 1.05262 1.70105 1.34658 1.20317 1.34694 0.85503 0.78078 0.80832 0.77271 1.18808 1.21070 1.15880 1.21859 0.97702 1.01153 0.84530 1.23548 1.03755 0.96832 0.98406 1.23640 0.91963 1.02121 1.02749 0.94721 0.91086 0.94109 0.89490 0.89422 0.91907 0.88624 0.89676 0.91199 0.94989 0.94490 0.87389 0.86648 0.94790 0.94913 0.95203 0.95368 0.92466 0.84844 0.89495 0.85588 0.85391 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.80 71.98 0.71 -2.11 16 2 C -0.12 -1.79 5.29 30.60 0.16 -1.62 16 3 C 0.14 2.79 2.05 44.99 0.09 2.89 16 4 C -0.13 -2.09 4.93 30.59 0.15 -1.94 16 5 C -0.15 -3.03 9.14 71.98 0.66 -2.37 16 6 N -0.57 -13.01 1.46 -774.03 -1.13 -14.13 16 7 C 0.51 16.71 7.31 87.66 0.64 17.35 16 8 O -0.59 -24.77 15.34 -3.04 -0.05 -24.82 16 9 C -0.13 -4.17 4.01 29.85 0.12 -4.05 16 10 C -0.08 -3.53 4.47 30.59 0.14 -3.39 16 11 C -0.01 -0.28 4.04 29.85 0.12 -0.16 16 12 C -0.54 -33.20 9.66 25.60 0.25 -32.95 16 13 H 0.02 1.23 7.99 -2.91 -0.02 1.20 16 14 C 0.00 -0.11 5.47 84.65 0.46 0.35 16 15 N -0.96 -62.51 13.96 21.44 0.30 -62.21 16 16 Si 0.96 44.38 27.47 68.60 1.88 46.26 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 20 C 0.05 0.78 4.54 44.99 0.20 0.98 16 21 C -0.19 -2.72 8.52 30.60 0.26 -2.46 16 22 C -0.17 -1.83 8.94 30.60 0.27 -1.55 16 23 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.04 0.88 7.75 -2.39 -0.02 0.86 16 26 H 0.09 0.98 7.36 -2.39 -0.02 0.96 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.77 6.95 -2.39 -0.02 1.76 16 29 H 0.10 1.13 5.10 -2.39 -0.01 1.12 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.04 0.87 7.05 -2.39 -0.02 0.86 16 34 H 0.11 2.94 8.01 -2.39 -0.02 2.92 16 35 H 0.12 3.16 5.26 -2.39 -0.01 3.15 16 36 H 0.03 1.63 8.03 -2.39 -0.02 1.61 16 37 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.03 1.35 7.20 -2.39 -0.02 1.34 16 39 H 0.03 1.26 7.57 -2.39 -0.02 1.25 16 40 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 41 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.09 1.63 6.10 -2.38 -0.01 1.61 16 43 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.10 1.28 4.85 -2.39 -0.01 1.26 16 Total: -1.00 -77.92 346.11 6.13 -71.80 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.88 Total: 14.14 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 4.24 Total: -31.03 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -0.83 Total: -76.35 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.82 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -77.92 6.13 -71.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593963615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.119 kcal (2) G-P(sol) polarization free energy of solvation -77.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds