Wall clock time and date at job start Mon Mar 30 2020 07:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46893 * 2 1 4 4 C 1.52998 * 109.47287 * 240.00304 * 2 1 3 5 5 C 1.52998 * 109.47320 * 120.00100 * 2 1 3 6 6 H 1.09004 * 109.99899 * 305.78179 * 5 2 1 7 7 C 1.54327 * 109.88149 * 184.69105 * 5 2 1 8 8 C 1.55160 * 102.94149 * 218.38799 * 7 5 2 9 9 C 1.54695 * 101.67326 * 35.33543 * 8 7 5 10 10 N 1.47023 * 109.88379 * 66.88116 * 5 2 1 11 11 C 1.34776 * 125.64379 * 298.32420 * 10 5 2 12 12 O 1.21277 * 120.00303 * 353.63626 * 11 10 5 13 13 C 1.50702 * 119.99446 * 173.36689 * 11 10 5 14 14 C 1.53004 * 109.46978 * 180.27075 * 13 11 10 15 15 C 1.53004 * 109.47127 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46817 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99904 * 0.02562 * 16 15 14 18 18 C 1.37869 * 119.99605 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00196 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99874 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47324 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47367 * 120.00381 * 20 18 16 23 23 H 1.48502 * 109.47226 * 240.00020 * 20 18 16 24 24 H 1.08997 * 109.47298 * 280.52523 * 1 2 3 25 25 H 1.08994 * 109.47614 * 40.53450 * 1 2 3 26 26 H 1.09007 * 109.47056 * 160.53262 * 1 2 3 27 27 H 1.08997 * 109.47437 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47282 * 300.00417 * 3 2 1 29 29 H 1.09011 * 109.46893 * 60.00011 * 3 2 1 30 30 H 1.08997 * 109.47002 * 299.99619 * 4 2 1 31 31 H 1.09003 * 109.47426 * 59.99921 * 4 2 1 32 32 H 1.09005 * 109.47222 * 179.97438 * 4 2 1 33 33 H 1.08998 * 110.72171 * 336.75026 * 7 5 2 34 34 H 1.08999 * 110.72116 * 99.85056 * 7 5 2 35 35 H 1.08993 * 111.00669 * 153.57255 * 8 7 5 36 36 H 1.08998 * 111.00080 * 277.39241 * 8 7 5 37 37 H 1.09003 * 110.39075 * 204.36712 * 9 8 7 38 38 H 1.09002 * 110.23625 * 82.11515 * 9 8 7 39 39 H 1.08997 * 109.47031 * 300.27239 * 13 11 10 40 40 H 1.09002 * 109.47148 * 60.27686 * 13 11 10 41 41 H 1.09000 * 109.46898 * 300.00151 * 14 13 11 42 42 H 1.09006 * 109.46970 * 59.99901 * 14 13 11 43 43 H 1.08997 * 109.47063 * 300.00275 * 15 14 13 44 44 H 1.08993 * 109.46928 * 60.00405 * 15 14 13 45 45 H 0.97003 * 120.00231 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.5996 -0.2772 2.1420 7 6 3.5787 -0.6248 1.3195 8 6 3.9903 -2.0217 1.8547 9 6 2.9407 -2.9368 1.1810 10 7 1.6949 -2.1487 1.1784 11 6 0.4462 -2.6531 1.1256 12 8 -0.5105 -1.9183 1.2507 13 6 0.2388 -4.1294 0.9051 14 6 -1.2601 -4.4357 0.8804 15 6 -1.4707 -5.9344 0.6559 16 6 -2.9471 -6.2359 0.6309 17 1 -3.6634 -5.4383 0.7616 18 6 -3.3832 -7.5299 0.4401 19 7 -2.5109 -8.5010 0.2805 20 14 -5.2132 -7.9036 0.4084 21 1 -5.9786 -6.6470 0.6093 22 1 -5.5743 -8.4982 -0.9036 23 1 -5.5414 -8.8626 1.4936 24 1 -0.3634 0.1877 1.0103 25 1 -0.3634 0.7810 -0.6678 26 1 -0.3633 -0.9690 -0.3425 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6765 1.9564 0.8901 30 1 1.6767 -1.7488 -1.2493 31 1 1.6767 -0.2073 -2.1393 32 1 3.1301 -0.7208 -1.2495 33 1 3.9999 -0.4518 0.3292 34 1 3.8847 0.1612 2.0099 35 1 4.9996 -2.2807 1.5351 36 1 3.9033 -2.0653 2.9404 37 1 2.8090 -3.8524 1.7578 38 1 3.2439 -3.1707 0.1605 39 1 0.6850 -4.4210 -0.0456 40 1 0.7103 -4.6874 1.7142 41 1 -1.7062 -4.1441 1.8312 42 1 -1.7316 -3.8777 0.0714 43 1 -1.0246 -6.2256 -0.2950 44 1 -0.9992 -6.4927 1.4645 45 1 -2.8177 -9.4114 0.1459 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593976372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:19 Heat of formation + Delta-G solvation = -56.142736 kcal Electronic energy + Delta-G solvation = -21489.559493 eV Core-core repulsion = 18506.254376 eV Total energy + Delta-G solvation = -2983.305117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67396 -37.80878 -35.64038 -34.11920 -32.08935 -31.50915 -28.58104 -27.87985 -27.28186 -26.86764 -24.33272 -22.95889 -21.51256 -20.44979 -19.36604 -17.97617 -16.92797 -16.72621 -16.17957 -15.25445 -14.83491 -14.42992 -14.34429 -14.09787 -13.70366 -13.45533 -13.17123 -12.72570 -12.61187 -12.40251 -12.23878 -12.05766 -11.76793 -11.75386 -11.61624 -11.32628 -11.22775 -11.16320 -10.81653 -10.65780 -10.54166 -10.47563 -10.41121 -10.33901 -9.63088 -9.43728 -9.18694 -8.94805 -8.36469 -8.29968 -5.95556 -3.96716 2.98684 3.14815 3.35102 3.42349 3.48330 4.34454 4.39074 4.51421 4.61461 4.84178 4.90841 4.97842 5.16220 5.21222 5.28114 5.40626 5.43323 5.50303 5.55505 5.59053 5.65124 5.69963 5.75577 5.77319 5.80521 5.88771 5.93282 5.98274 6.08797 6.14624 6.24807 6.30368 6.40866 6.56027 6.76120 6.79513 6.97950 7.20039 7.70528 7.75449 7.86966 8.05589 8.49618 8.53843 9.10682 9.67230 11.16008 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031368 B = 0.003900 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.410092 B = 7177.284651 C = 7697.864569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.137 4.137 5 C 0.147 3.853 6 H 0.071 0.929 7 C -0.130 4.130 8 C -0.134 4.134 9 C 0.100 3.900 10 N -0.620 5.620 11 C 0.522 3.478 12 O -0.521 6.521 13 C -0.133 4.133 14 C -0.094 4.094 15 C 0.020 3.980 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.062 0.938 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.015 0.985 44 H 0.015 0.985 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.659 16.518 0.608 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.079 4.079 3 C -0.196 4.196 4 C -0.194 4.194 5 C 0.044 3.956 6 H 0.089 0.911 7 C -0.168 4.168 8 C -0.172 4.172 9 C -0.023 4.023 10 N -0.356 5.356 11 C 0.312 3.688 12 O -0.397 6.397 13 C -0.173 4.173 14 C -0.132 4.132 15 C -0.017 4.017 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.039 16.682 0.647 23.151 hybrid contribution -0.851 -0.387 -0.052 0.936 sum 15.189 16.295 0.595 22.284 Atomic orbital electron populations 1.22241 0.92676 1.02119 1.02032 1.20939 0.97212 0.94850 0.94859 1.21882 1.00596 0.95346 1.01792 1.21870 1.00208 1.00670 0.96675 1.21610 0.94276 0.82232 0.97506 0.91131 1.22786 0.94353 0.97512 1.02171 1.22739 0.98710 0.94891 1.00831 1.22243 0.84069 0.95218 1.00755 1.48609 1.05593 1.06482 1.74873 1.20825 0.80775 0.91310 0.75847 1.90706 1.40168 1.60555 1.48282 1.21828 1.02051 0.90404 1.03047 1.21442 0.90181 1.00001 1.01556 1.19131 0.96794 0.88882 0.96871 1.21314 0.92373 0.93168 1.48571 0.92546 1.25017 0.97610 0.96450 0.95447 1.69975 1.33408 1.00226 1.50168 0.86549 0.85723 0.78326 0.77517 1.19684 1.21059 1.21052 0.91878 0.94808 0.90755 0.92679 0.92615 0.92743 0.92475 0.92984 0.92949 0.90128 0.90446 0.89995 0.90725 0.90387 0.91499 0.89736 0.89754 0.92758 0.92786 0.96675 0.96673 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 6.86 37.16 0.25 -1.66 16 2 C -0.08 -0.87 0.58 -154.51 -0.09 -0.96 16 3 C -0.14 -1.24 8.07 37.16 0.30 -0.94 16 4 C -0.14 -1.48 7.96 37.16 0.30 -1.18 16 5 C 0.15 1.64 2.33 -66.95 -0.16 1.48 16 6 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 7 C -0.13 -1.01 5.15 -24.89 -0.13 -1.14 16 8 C -0.13 -0.98 7.07 -24.70 -0.17 -1.16 16 9 C 0.10 0.97 6.63 -2.65 -0.02 0.95 16 10 N -0.62 -7.88 2.08 -163.15 -0.34 -8.22 16 11 C 0.52 8.58 6.81 -10.98 -0.07 8.51 16 12 O -0.52 -10.09 11.44 5.56 0.06 -10.03 16 13 C -0.13 -2.29 4.82 -27.88 -0.13 -2.43 16 14 C -0.09 -2.06 4.44 -26.73 -0.12 -2.18 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 17 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 20 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H 0.06 1.00 6.93 -51.93 -0.36 0.64 16 25 H 0.03 0.44 7.98 -51.93 -0.41 0.03 16 26 H 0.07 1.27 5.49 -51.93 -0.29 0.98 16 27 H 0.05 0.41 6.75 -51.93 -0.35 0.06 16 28 H 0.05 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.06 0.72 7.28 -51.93 -0.38 0.34 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.47 6.35 -51.93 -0.33 0.14 16 33 H 0.08 0.58 5.50 -51.93 -0.29 0.29 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.74 7.54 -51.93 -0.39 0.35 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.08 1.34 7.76 -51.93 -0.40 0.94 16 41 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -32.16 341.19 -8.24 -40.39 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -8.22 Total: -3.70 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.59 Total: -14.20 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.40 Total: -34.80 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.06 Total: -10.03 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.16 -8.24 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593976372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.750 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds