Wall clock time and date at job start Mon Mar 30 2020 06:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46941 * 2 1 4 4 C 1.52999 * 109.46974 * 181.11660 * 3 2 1 5 5 C 1.53002 * 112.85117 * 294.89846 * 4 3 2 6 6 N 1.46498 * 109.47179 * 301.52237 * 5 4 3 7 7 C 1.34776 * 120.00144 * 175.14434 * 6 5 4 8 8 O 1.21281 * 120.00199 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99979 * 180.02562 * 7 6 5 10 10 C 1.52998 * 109.46874 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47362 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99607 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00338 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00046 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99951 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47266 * 89.99706 * 16 14 12 18 18 H 1.48500 * 109.47143 * 210.00196 * 16 14 12 19 19 H 1.48504 * 109.46823 * 329.99912 * 16 14 12 20 20 C 1.53788 * 113.61590 * 163.70234 * 4 3 2 21 21 C 1.53959 * 87.01836 * 220.04710 * 20 4 3 22 22 C 1.53784 * 87.11304 * 25.36296 * 21 20 4 23 23 H 1.08999 * 109.46624 * 300.00025 * 1 2 3 24 24 H 1.08999 * 109.47119 * 59.99860 * 1 2 3 25 25 H 1.08992 * 109.47049 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46624 * 239.99975 * 2 1 3 27 27 H 1.08999 * 109.47119 * 120.00139 * 2 1 3 28 28 H 1.09003 * 109.47485 * 301.11283 * 3 2 1 29 29 H 1.09003 * 109.47469 * 61.11803 * 3 2 1 30 30 H 1.09006 * 109.47131 * 61.52135 * 5 4 3 31 31 H 1.09002 * 109.47165 * 181.52213 * 5 4 3 32 32 H 0.97005 * 119.99964 * 355.14918 * 6 5 4 33 33 H 1.08999 * 109.47077 * 300.00506 * 9 7 6 34 34 H 1.09000 * 109.46743 * 60.00293 * 9 7 6 35 35 H 1.08999 * 109.47107 * 300.00133 * 10 9 7 36 36 H 1.09000 * 109.47246 * 60.00540 * 10 9 7 37 37 H 1.08999 * 109.47201 * 299.99938 * 11 10 9 38 38 H 1.08992 * 109.47385 * 59.99996 * 11 10 9 39 39 H 0.97003 * 120.00464 * 179.97438 * 15 14 12 40 40 H 1.08990 * 113.61152 * 334.56734 * 20 4 3 41 41 H 1.09002 * 113.60946 * 105.46950 * 20 4 3 42 42 H 1.08996 * 113.53574 * 270.81103 * 21 20 4 43 43 H 1.09003 * 113.73833 * 139.94199 * 21 20 4 44 44 H 1.08998 * 113.61330 * 220.09330 * 22 21 20 45 45 H 1.08995 * 113.69156 * 89.19661 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5697 1.4426 -0.0281 5 6 4.1873 0.8407 1.2358 6 7 3.7328 1.5936 2.4075 7 6 4.0718 1.1827 3.6455 8 8 4.7533 0.1899 3.7896 9 6 3.6038 1.9568 4.8509 10 6 4.1235 1.2835 6.1227 11 6 3.6479 2.0691 7.3464 12 6 4.1602 1.4063 8.5991 13 1 4.7650 0.5142 8.5293 14 6 3.8578 1.9393 9.8342 15 7 4.3045 1.3606 10.9273 16 14 2.8124 3.4827 9.9548 17 1 1.3792 3.1042 10.0435 18 1 3.1982 4.2484 11.1673 19 1 3.0288 4.3226 8.7493 20 6 4.1785 2.7976 -0.4260 21 6 5.2100 2.0023 -1.2469 22 6 4.1620 0.8800 -1.3311 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6605 1.9621 -0.8798 29 1 1.6931 1.9505 0.8998 30 1 3.8785 -0.2004 1.3307 31 1 5.2740 0.8928 1.1695 32 1 3.1879 2.3878 2.2923 33 1 3.9851 2.9766 4.7982 34 1 2.5141 1.9769 4.8692 35 1 3.7425 0.2637 6.1755 36 1 5.2131 1.2639 6.1041 37 1 4.0285 3.0891 7.2938 38 1 2.5583 2.0884 7.3648 39 1 4.0921 1.7358 11.7963 40 1 3.5157 3.4120 -1.0352 41 1 4.6129 3.3438 0.4113 42 1 6.0993 1.7276 -0.6796 43 1 5.4453 2.4531 -2.2110 44 1 4.5831 -0.1196 -1.2234 45 1 3.4941 0.9679 -2.1879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593990372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:37 Heat of formation + Delta-G solvation = -58.190565 kcal Electronic energy + Delta-G solvation = -20423.205995 eV Core-core repulsion = 17439.812078 eV Total energy + Delta-G solvation = -2983.393917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52558 -38.97782 -34.69986 -34.33813 -34.02000 -32.05003 -29.38505 -28.31440 -26.44803 -26.05080 -23.63976 -23.00541 -21.33322 -20.40147 -19.83509 -18.66260 -16.89553 -16.46587 -16.20666 -15.82307 -15.25669 -15.18820 -14.91756 -14.15650 -13.98205 -13.64541 -13.30172 -13.23412 -12.84068 -12.68690 -12.59355 -12.26204 -12.10649 -11.95712 -11.67859 -11.53434 -11.31038 -11.00911 -10.94148 -10.76024 -10.71935 -10.42613 -10.24726 -9.97319 -9.81075 -9.67048 -9.37766 -9.10232 -8.97152 -8.48951 -5.98563 -3.96175 2.92595 3.26226 3.33117 3.40108 3.43199 4.16595 4.25592 4.28044 4.49042 4.51890 4.67735 4.82042 4.93417 5.02383 5.13513 5.30393 5.34181 5.34827 5.37873 5.42895 5.51508 5.57027 5.59468 5.60487 5.61354 5.64613 5.70684 5.75420 5.85415 5.91123 6.07020 6.08421 6.14619 6.15516 6.49480 6.59966 6.73010 6.95752 7.41005 7.48941 7.61095 7.85271 8.45817 8.61871 9.08401 9.63573 11.15222 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.003273 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.006583 B = 8553.868730 C = 8883.769549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.095 4.095 5 C 0.144 3.856 6 N -0.736 5.736 7 C 0.512 3.488 8 O -0.536 6.536 9 C -0.141 4.141 10 C -0.087 4.087 11 C -0.015 4.015 12 C -0.518 4.518 13 H 0.072 0.928 14 C 0.064 3.936 15 N -0.905 5.905 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.125 4.125 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.398 0.602 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.015 0.985 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.261 3.261 -28.377 29.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.096 4.096 5 C 0.020 3.980 6 N -0.390 5.390 7 C 0.299 3.701 8 O -0.412 6.412 9 C -0.181 4.181 10 C -0.125 4.125 11 C -0.052 4.052 12 C -0.556 4.556 13 H 0.091 0.909 14 C -0.137 4.137 15 N -0.544 5.544 16 Si 0.709 3.291 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.171 4.171 21 C -0.181 4.181 22 C -0.163 4.163 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.232 0.768 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.752 2.537 -28.066 28.578 hybrid contribution -0.843 1.199 0.123 1.471 sum -5.595 3.737 -27.943 28.741 Atomic orbital electron populations 1.21770 0.95952 1.01623 1.01634 1.21518 0.95679 0.96767 1.02266 1.21547 0.93228 0.97235 1.01973 1.22100 0.95347 0.97374 0.94747 1.21015 0.98432 0.95779 0.82772 1.46064 1.56016 1.31186 1.05694 1.21147 0.79428 0.85217 0.84291 1.90693 1.37820 1.26469 1.86248 1.21862 1.02354 1.00270 0.93648 1.21257 1.00814 0.99338 0.91103 1.19607 0.95856 0.95830 0.93897 1.21175 1.32738 1.12590 0.89118 0.90941 1.25053 0.95755 0.97097 0.95768 1.69923 1.46221 1.40556 0.97736 0.86758 0.80863 0.83914 0.77595 1.20358 1.21458 1.19047 1.23039 0.98297 0.95653 1.00103 1.22869 0.97348 0.97452 1.00387 1.22898 0.98062 0.98752 0.96568 0.92695 0.92999 0.92827 0.92033 0.91718 0.91766 0.91795 0.91141 0.91797 0.76784 0.89470 0.89472 0.92136 0.92110 0.96687 0.97117 0.92810 0.89950 0.91185 0.90050 0.91492 0.91232 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -0.96 5.59 -26.73 -0.15 -1.11 16 3 C -0.10 -0.72 4.50 -26.73 -0.12 -0.84 16 4 C -0.10 -0.70 0.51 -153.69 -0.08 -0.78 16 5 C 0.14 1.49 4.65 -4.04 -0.02 1.47 16 6 N -0.74 -8.29 5.23 -60.29 -0.32 -8.60 16 7 C 0.51 8.00 7.83 -10.98 -0.09 7.91 16 8 O -0.54 -10.72 15.98 5.56 0.09 -10.64 16 9 C -0.14 -2.22 5.70 -27.88 -0.16 -2.38 16 10 C -0.09 -1.84 4.44 -26.73 -0.12 -1.96 16 11 C -0.01 -0.35 4.04 -27.88 -0.11 -0.47 16 12 C -0.52 -15.31 9.66 -34.44 -0.33 -15.65 16 13 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 14 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.91 -28.63 13.96 55.43 0.77 -27.86 16 16 Si 0.88 21.93 27.47 -169.99 -4.67 17.27 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 19 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 20 C -0.13 -0.91 7.23 -25.82 -0.19 -1.10 16 21 C -0.14 -0.97 7.74 -25.82 -0.20 -1.17 16 22 C -0.12 -0.83 6.53 -25.91 -0.17 -1.00 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.44 7.61 -51.93 -0.40 0.05 16 27 H 0.06 0.60 6.94 -51.93 -0.36 0.24 16 28 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.06 0.47 7.04 -51.93 -0.37 0.10 16 30 H 0.07 0.83 7.00 -51.93 -0.36 0.46 16 31 H 0.06 0.73 7.30 -51.93 -0.38 0.35 16 32 H 0.40 3.48 7.55 -40.82 -0.31 3.17 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 36 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 37 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 38 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 41 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 42 H 0.08 0.60 7.60 -51.93 -0.39 0.21 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 45 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -33.52 354.77 -8.63 -42.15 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -8.40 Total: -1.68 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.46 Total: -15.99 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.46 Total: -36.46 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.52 -8.63 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593990372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.041 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds