Wall clock time and date at job start Mon Mar 30 2020 06:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46941 * 2 1 4 4 C 1.52999 * 109.46974 * 181.11660 * 3 2 1 5 5 C 1.53002 * 112.85117 * 294.89846 * 4 3 2 6 6 N 1.46498 * 109.47179 * 301.52237 * 5 4 3 7 7 C 1.34776 * 120.00144 * 175.14434 * 6 5 4 8 8 O 1.21281 * 120.00199 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99979 * 180.02562 * 7 6 5 10 10 C 1.52998 * 109.46874 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47362 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99607 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00338 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00046 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99951 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47266 * 89.99706 * 16 14 12 18 18 H 1.48500 * 109.47143 * 210.00196 * 16 14 12 19 19 H 1.48504 * 109.46823 * 329.99912 * 16 14 12 20 20 C 1.53788 * 113.61590 * 163.70234 * 4 3 2 21 21 C 1.53959 * 87.01836 * 220.04710 * 20 4 3 22 22 C 1.53784 * 87.11304 * 25.36296 * 21 20 4 23 23 H 1.08999 * 109.46624 * 300.00025 * 1 2 3 24 24 H 1.08999 * 109.47119 * 59.99860 * 1 2 3 25 25 H 1.08992 * 109.47049 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46624 * 239.99975 * 2 1 3 27 27 H 1.08999 * 109.47119 * 120.00139 * 2 1 3 28 28 H 1.09003 * 109.47485 * 301.11283 * 3 2 1 29 29 H 1.09003 * 109.47469 * 61.11803 * 3 2 1 30 30 H 1.09006 * 109.47131 * 61.52135 * 5 4 3 31 31 H 1.09002 * 109.47165 * 181.52213 * 5 4 3 32 32 H 0.97005 * 119.99964 * 355.14918 * 6 5 4 33 33 H 1.08999 * 109.47077 * 300.00506 * 9 7 6 34 34 H 1.09000 * 109.46743 * 60.00293 * 9 7 6 35 35 H 1.08999 * 109.47107 * 300.00133 * 10 9 7 36 36 H 1.09000 * 109.47246 * 60.00540 * 10 9 7 37 37 H 1.08999 * 109.47201 * 299.99938 * 11 10 9 38 38 H 1.08992 * 109.47385 * 59.99996 * 11 10 9 39 39 H 0.97003 * 120.00464 * 179.97438 * 15 14 12 40 40 H 1.08990 * 113.61152 * 334.56734 * 20 4 3 41 41 H 1.09002 * 113.60946 * 105.46950 * 20 4 3 42 42 H 1.08996 * 113.53574 * 270.81103 * 21 20 4 43 43 H 1.09003 * 113.73833 * 139.94199 * 21 20 4 44 44 H 1.08998 * 113.61330 * 220.09330 * 22 21 20 45 45 H 1.08995 * 113.69156 * 89.19661 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5697 1.4426 -0.0281 5 6 4.1873 0.8407 1.2358 6 7 3.7328 1.5936 2.4075 7 6 4.0718 1.1827 3.6455 8 8 4.7533 0.1899 3.7896 9 6 3.6038 1.9568 4.8509 10 6 4.1235 1.2835 6.1227 11 6 3.6479 2.0691 7.3464 12 6 4.1602 1.4063 8.5991 13 1 4.7650 0.5142 8.5293 14 6 3.8578 1.9393 9.8342 15 7 4.3045 1.3606 10.9273 16 14 2.8124 3.4827 9.9548 17 1 1.3792 3.1042 10.0435 18 1 3.1982 4.2484 11.1673 19 1 3.0288 4.3226 8.7493 20 6 4.1785 2.7976 -0.4260 21 6 5.2100 2.0023 -1.2469 22 6 4.1620 0.8800 -1.3311 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6605 1.9621 -0.8798 29 1 1.6931 1.9505 0.8998 30 1 3.8785 -0.2004 1.3307 31 1 5.2740 0.8928 1.1695 32 1 3.1879 2.3878 2.2923 33 1 3.9851 2.9766 4.7982 34 1 2.5141 1.9769 4.8692 35 1 3.7425 0.2637 6.1755 36 1 5.2131 1.2639 6.1041 37 1 4.0285 3.0891 7.2938 38 1 2.5583 2.0884 7.3648 39 1 4.0921 1.7358 11.7963 40 1 3.5157 3.4120 -1.0352 41 1 4.6129 3.3438 0.4113 42 1 6.0993 1.7276 -0.6796 43 1 5.4453 2.4531 -2.2110 44 1 4.5831 -0.1196 -1.2234 45 1 3.4941 0.9679 -2.1879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593990372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:37 Heat of formation + Delta-G solvation = -79.083035 kcal Electronic energy + Delta-G solvation = -20424.111961 eV Core-core repulsion = 17439.812078 eV Total energy + Delta-G solvation = -2984.299883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.33245 -40.06724 -36.17888 -35.43132 -34.97040 -34.11800 -30.69311 -29.41771 -27.46899 -26.63117 -25.23187 -23.75181 -22.20552 -21.78939 -21.21342 -19.45472 -18.82585 -17.79597 -17.07561 -16.87011 -16.33878 -16.22418 -15.92505 -15.54172 -15.15365 -14.80180 -14.57667 -14.36532 -13.98743 -13.81319 -13.67251 -13.22028 -13.18604 -12.89317 -12.70441 -12.69204 -12.47331 -12.25391 -11.86679 -11.78714 -11.73041 -11.58466 -11.49488 -11.33390 -11.32207 -11.02828 -10.85749 -10.74814 -10.72017 -10.03365 -8.27459 -6.33227 1.38778 1.42521 1.54668 1.68665 2.23134 2.39581 3.07634 3.56111 3.63391 3.68018 3.93454 3.98957 4.04933 4.17302 4.23999 4.25866 4.35455 4.48389 4.56723 4.67806 4.78597 4.83463 4.88750 4.92158 4.92694 4.97185 4.99252 5.01051 5.04576 5.04671 5.12492 5.17747 5.27652 5.33355 5.45532 5.49465 5.53352 5.57760 5.58561 5.60710 5.68563 6.31164 6.59399 6.75604 7.30433 7.32022 8.90375 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.003273 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.006583 B = 8553.868730 C = 8883.769549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.098 4.098 4 C -0.091 4.091 5 C 0.144 3.856 6 N -0.712 5.712 7 C 0.511 3.489 8 O -0.591 6.591 9 C -0.131 4.131 10 C -0.081 4.081 11 C -0.009 4.009 12 C -0.541 4.541 13 H 0.018 0.982 14 C -0.004 4.004 15 N -0.958 5.958 16 Si 0.963 3.037 17 H -0.264 1.264 18 H -0.286 1.286 19 H -0.235 1.235 20 C -0.127 4.127 21 C -0.146 4.146 22 C -0.122 4.122 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.415 0.585 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.029 0.971 39 H 0.266 0.734 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.514 6.423 -30.817 32.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.136 4.136 4 C -0.091 4.091 5 C 0.020 3.980 6 N -0.365 5.365 7 C 0.299 3.701 8 O -0.471 6.471 9 C -0.170 4.170 10 C -0.119 4.119 11 C -0.046 4.046 12 C -0.579 4.579 13 H 0.037 0.963 14 C -0.200 4.200 15 N -0.599 5.599 16 Si 0.785 3.215 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.158 1.158 20 C -0.164 4.164 21 C -0.183 4.183 22 C -0.159 4.159 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.252 0.748 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.026 5.724 -30.565 31.880 hybrid contribution -0.061 0.086 0.876 0.882 sum -7.087 5.810 -29.689 31.071 Atomic orbital electron populations 1.21764 0.95503 1.01592 1.02034 1.21500 0.96057 0.97250 1.01394 1.21542 0.92495 0.96728 1.02821 1.21998 0.95658 0.98035 0.93408 1.21043 0.97999 0.95207 0.83734 1.45828 1.54814 1.31242 1.04632 1.21164 0.78879 0.84482 0.85571 1.90685 1.40494 1.28865 1.87058 1.21718 1.03999 1.00756 0.90559 1.21039 0.99283 0.98358 0.93237 1.19545 0.96664 0.96161 0.92245 1.21571 1.32543 1.11565 0.92201 0.96335 1.26212 0.97314 1.01566 0.94883 1.70107 1.48103 1.42982 0.98672 0.85482 0.78722 0.78568 0.78767 1.18872 1.21184 1.15811 1.23048 0.98255 0.95102 1.00037 1.22872 0.96995 0.97602 1.00846 1.22925 0.98171 0.98346 0.96500 0.93096 0.91729 0.93168 0.91568 0.94010 0.89992 0.91765 0.92823 0.92977 0.74763 0.86518 0.86504 0.94655 0.94629 0.95079 0.95221 0.92488 0.88173 0.91793 0.91314 0.90352 0.92020 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.72 5.59 30.59 0.17 -1.55 16 3 C -0.10 -1.11 4.50 30.59 0.14 -0.97 16 4 C -0.09 -1.16 0.51 -51.65 -0.03 -1.18 16 5 C 0.14 2.90 4.65 86.38 0.40 3.30 16 6 N -0.71 -14.89 5.23 -463.05 -2.42 -17.31 16 7 C 0.51 15.60 7.83 87.66 0.69 16.29 16 8 O -0.59 -24.39 15.98 -3.03 -0.05 -24.44 16 9 C -0.13 -3.80 5.70 29.85 0.17 -3.63 16 10 C -0.08 -3.44 4.44 30.59 0.14 -3.30 16 11 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 12 C -0.54 -32.93 9.66 25.60 0.25 -32.68 16 13 H 0.02 1.27 7.99 -2.91 -0.02 1.24 16 14 C 0.00 -0.24 5.47 84.65 0.46 0.22 16 15 N -0.96 -62.41 13.96 21.44 0.30 -62.11 16 16 Si 0.96 44.18 27.47 68.60 1.88 46.06 16 17 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 20 C -0.13 -1.37 7.23 31.18 0.23 -1.15 16 21 C -0.15 -1.69 7.74 31.18 0.24 -1.45 16 22 C -0.12 -1.38 6.53 31.12 0.20 -1.18 16 23 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.84 7.61 -2.39 -0.02 0.83 16 27 H 0.04 0.77 6.94 -2.39 -0.02 0.75 16 28 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 29 H 0.06 0.73 7.04 -2.39 -0.02 0.71 16 30 H 0.05 1.29 7.00 -2.38 -0.02 1.27 16 31 H 0.05 1.19 7.30 -2.39 -0.02 1.18 16 32 H 0.41 5.95 7.55 -92.70 -0.70 5.25 16 33 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.03 1.63 8.10 -2.39 -0.02 1.62 16 36 H 0.03 1.65 8.10 -2.39 -0.02 1.63 16 37 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 38 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 39 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 40 H 0.10 0.78 8.05 -2.39 -0.02 0.76 16 41 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 42 H 0.07 0.97 7.60 -2.39 -0.02 0.95 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 45 H 0.10 0.86 8.10 -2.39 -0.02 0.84 16 Total: -1.00 -77.02 354.77 3.78 -73.23 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.18 Total: 13.36 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 3.89 Total: -28.79 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -2.12 Total: -79.43 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -77.02 3.78 -73.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593990372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.848 kcal (2) G-P(sol) polarization free energy of solvation -77.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds