Wall clock time and date at job start Mon Mar 30 2020 06:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46917 * 2 1 4 4 C 1.52992 * 110.30793 * 302.64252 * 3 2 1 5 5 C 1.53001 * 109.47044 * 301.72074 * 4 3 2 6 6 C 1.54592 * 110.32064 * 180.37441 * 3 2 1 7 7 C 1.54394 * 104.81374 * 241.11586 * 6 3 2 8 8 N 1.48150 * 104.72180 * 23.88768 * 7 6 3 9 9 C 1.34777 * 127.83335 * 140.35769 * 8 7 6 10 10 O 1.21279 * 119.99662 * 179.97438 * 9 8 7 11 11 C 1.50697 * 120.00267 * 359.97438 * 9 8 7 12 12 C 1.53000 * 109.47125 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47209 * 180.02562 * 12 11 9 14 14 C 1.50693 * 109.47027 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00570 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99820 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00107 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 120.00089 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46855 * 89.99993 * 18 16 14 20 20 H 1.48497 * 109.46977 * 210.00192 * 18 16 14 21 21 H 1.48499 * 109.46816 * 330.00246 * 18 16 14 22 22 C 1.48139 * 104.32483 * 320.36415 * 8 7 6 23 23 H 1.09002 * 109.47250 * 302.86597 * 1 2 3 24 24 H 1.09004 * 109.47675 * 62.86518 * 1 2 3 25 25 H 1.08999 * 109.47117 * 182.86641 * 1 2 3 26 26 H 1.08996 * 109.46930 * 240.00797 * 2 1 3 27 27 H 1.08999 * 109.47223 * 120.00248 * 2 1 3 28 28 H 1.08997 * 109.47824 * 61.72154 * 4 3 2 29 29 H 1.09003 * 109.47137 * 181.72639 * 4 3 2 30 30 H 1.08997 * 109.47278 * 299.80961 * 5 4 3 31 31 H 1.09000 * 109.47051 * 59.80625 * 5 4 3 32 32 H 1.08999 * 109.47035 * 179.81006 * 5 4 3 33 33 H 1.08988 * 110.44095 * 122.27277 * 6 3 2 34 34 H 1.09004 * 110.38694 * 359.91753 * 6 3 2 35 35 H 1.09001 * 110.40378 * 265.04961 * 7 6 3 36 36 H 1.08993 * 110.41135 * 142.73541 * 7 6 3 37 37 H 1.09000 * 109.47386 * 300.00208 * 11 9 8 38 38 H 1.08999 * 109.46727 * 60.00028 * 11 9 8 39 39 H 1.09006 * 109.46886 * 300.00042 * 12 11 9 40 40 H 1.09003 * 109.46995 * 59.99951 * 12 11 9 41 41 H 1.08997 * 109.46663 * 300.00178 * 13 12 11 42 42 H 1.08999 * 109.46862 * 59.99921 * 13 12 11 43 43 H 0.97003 * 119.99716 * 180.02562 * 17 16 14 44 44 H 1.08995 * 110.40916 * 158.37196 * 22 8 7 45 45 H 1.09006 * 110.40442 * 280.79583 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4872 2.2011 -1.2082 5 6 1.9062 1.4863 -2.4945 6 6 3.5856 1.4655 -0.0095 7 6 3.9777 2.1894 1.2967 8 7 2.8155 1.9997 2.1957 9 6 2.8271 1.7446 3.5191 10 8 1.7821 1.6144 4.1206 11 6 4.1384 1.6213 4.2513 12 6 3.8717 1.3331 5.7300 13 6 5.2031 1.2084 6.4736 14 6 4.9403 0.9252 7.9302 15 1 3.9253 0.8420 8.2896 16 6 5.9958 0.7713 8.8038 17 7 7.2319 0.8722 8.3661 18 14 5.6702 0.4195 10.6093 19 1 5.6024 -1.0484 10.8232 20 1 6.7684 0.9893 11.4305 21 1 4.3808 1.0381 11.0094 22 6 1.6380 2.1538 1.3101 23 1 -0.3634 0.5577 0.8632 24 1 -0.3634 0.4687 -0.9146 25 1 -0.3633 -1.0264 0.0514 26 1 1.8932 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.3993 2.2352 -1.1494 29 1 1.8829 3.2168 -1.2116 30 1 2.9940 1.4552 -2.5551 31 1 1.5134 0.4695 -2.4895 32 1 1.5096 2.0248 -3.3551 33 1 3.9528 2.0183 -0.8740 34 1 3.9805 0.4495 -0.0126 35 1 4.1432 3.2502 1.1082 36 1 4.8703 1.7372 1.7287 37 1 4.7196 0.8057 3.8209 38 1 4.6957 2.5533 4.1579 39 1 3.2907 2.1490 6.1601 40 1 3.3141 0.4011 5.8238 41 1 5.7844 0.3929 6.0435 42 1 5.7602 2.1406 6.3798 43 1 7.9744 0.7636 8.9807 44 1 0.7651 1.6729 1.7513 45 1 1.4381 3.2090 1.1238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593991134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:15 Heat of formation + Delta-G solvation = -88.494137 kcal Electronic energy + Delta-G solvation = -20786.697675 eV Core-core repulsion = 17801.989696 eV Total energy + Delta-G solvation = -2984.707979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37276 -39.54673 -36.15329 -35.87337 -34.02830 -32.26352 -31.12786 -30.12933 -28.78266 -26.26970 -25.10108 -24.04159 -23.22890 -22.05835 -20.16696 -19.35077 -18.47525 -17.94844 -17.32710 -16.57036 -16.35965 -16.30818 -16.05633 -15.05679 -14.86472 -14.64639 -14.42708 -13.98553 -13.88623 -13.77155 -13.64350 -13.19138 -13.04697 -12.86881 -12.74503 -12.63533 -12.51140 -12.43157 -12.35027 -12.07635 -11.86773 -11.59496 -11.49031 -11.35413 -11.27889 -11.17006 -11.13694 -10.75641 -10.55627 -9.72629 -8.21423 -6.31589 1.38661 1.40012 1.51633 1.60438 1.97320 2.40903 3.11364 3.41694 3.66482 3.73590 3.85787 4.16077 4.18664 4.20230 4.22810 4.34961 4.40300 4.53655 4.57772 4.62276 4.68802 4.74402 4.78545 4.89718 4.91602 4.96544 4.98025 4.99522 5.06233 5.11768 5.15387 5.20286 5.27200 5.31667 5.35520 5.44288 5.51401 5.54171 5.66264 5.72564 5.84330 6.25823 6.53184 6.83264 7.15170 7.37034 8.90223 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.041281 B = 0.003184 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.111115 B = 8790.481677 C = 9089.343904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.108 4.108 3 C -0.063 4.063 4 C -0.106 4.106 5 C -0.152 4.152 6 C -0.121 4.121 7 C 0.090 3.910 8 N -0.626 5.626 9 C 0.531 3.469 10 O -0.589 6.589 11 C -0.122 4.122 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.549 4.549 15 H 0.050 0.950 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.269 1.269 22 C 0.102 3.898 23 H 0.041 0.959 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.265 0.735 44 H 0.062 0.938 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 2.430 -25.837 27.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C -0.064 4.064 4 C -0.143 4.143 5 C -0.209 4.209 6 C -0.159 4.159 7 C -0.032 4.032 8 N -0.360 5.360 9 C 0.322 3.678 10 O -0.470 6.470 11 C -0.162 4.162 12 C -0.120 4.120 13 C -0.009 4.009 14 C -0.587 4.587 15 H 0.069 0.931 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.787 3.213 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.193 1.193 22 C -0.020 4.020 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.728 2.340 -25.357 26.919 hybrid contribution -0.052 -0.251 1.371 1.395 sum -8.780 2.089 -23.986 25.627 Atomic orbital electron populations 1.21882 0.95706 1.01640 1.02014 1.21571 0.96184 0.95304 1.01511 1.21556 0.95694 0.95476 0.93696 1.21554 1.00986 0.98919 0.92871 1.21834 1.02006 1.00643 0.96434 1.22767 0.94070 1.01815 0.97201 1.22729 0.88745 1.01949 0.89751 1.49096 1.10449 1.69968 1.06446 1.20746 0.91530 0.74782 0.80728 1.90651 1.36080 1.52874 1.67402 1.21621 0.94184 1.04935 0.95454 1.21169 0.97996 0.99906 0.92893 1.18994 0.92412 0.95490 0.93978 1.21680 0.92768 1.48835 0.95425 0.93148 1.25910 0.94818 0.94941 1.03761 1.70066 0.98954 1.50946 1.36917 0.85489 0.78056 0.78682 0.79092 1.19655 1.20136 1.19343 1.22646 0.89036 1.00648 0.89678 0.94042 0.90765 0.92870 0.89866 0.94553 0.91511 0.90948 0.91887 0.92531 0.92148 0.87523 0.90696 0.89247 0.89504 0.87811 0.87705 0.94185 0.94247 0.98060 0.98014 0.92594 0.91998 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.27 71.98 0.67 -1.84 16 2 C -0.11 -1.79 4.33 30.59 0.13 -1.65 16 3 C -0.06 -0.94 0.49 -51.17 -0.03 -0.96 16 4 C -0.11 -1.10 4.28 30.59 0.13 -0.97 16 5 C -0.15 -1.25 9.33 71.98 0.67 -0.58 16 6 C -0.12 -1.55 5.80 31.61 0.18 -1.36 16 7 C 0.09 1.54 6.91 86.54 0.60 2.14 16 8 N -0.63 -16.28 3.32 -807.95 -2.68 -18.96 16 9 C 0.53 18.81 7.91 87.66 0.69 19.50 16 10 O -0.59 -26.16 16.25 -3.03 -0.05 -26.21 16 11 C -0.12 -4.31 4.68 29.85 0.14 -4.17 16 12 C -0.08 -3.77 4.44 30.60 0.14 -3.63 16 13 C 0.03 1.54 4.97 29.85 0.15 1.69 16 14 C -0.55 -33.01 9.11 25.60 0.23 -32.77 16 15 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 16 C 0.00 0.22 5.46 84.65 0.46 0.68 16 17 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 18 Si 0.96 45.79 29.54 68.60 2.03 47.82 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 C 0.10 2.22 5.97 86.54 0.52 2.74 16 23 H 0.04 0.81 6.30 -2.39 -0.02 0.79 16 24 H 0.07 0.93 6.65 -2.38 -0.02 0.91 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 1.10 6.62 -2.39 -0.02 1.08 16 27 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.72 6.63 -2.39 -0.02 0.70 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.46 6.77 -2.39 -0.02 0.44 16 31 H 0.06 0.50 6.51 -2.39 -0.02 0.48 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.11 0.87 6.70 -2.39 -0.02 0.85 16 34 H 0.07 1.00 7.72 -2.39 -0.02 0.98 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.45 7.30 -2.39 -0.02 1.43 16 37 H 0.10 3.28 7.95 -2.39 -0.02 3.27 16 38 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.04 1.93 8.10 -2.38 -0.02 1.91 16 40 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.06 1.65 5.81 -2.39 -0.01 1.63 16 45 H 0.08 1.51 7.86 -2.38 -0.02 1.49 16 Total: -1.00 -73.30 346.88 5.21 -68.09 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 0.94 Total: 7.10 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 4.69 Total: -21.18 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -2.39 Total: -75.62 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.05 Total: -26.21 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -73.30 5.21 -68.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593991134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.399 kcal (2) G-P(sol) polarization free energy of solvation -73.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds