Wall clock time and date at job start Mon Mar 30 2020 07:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47504 * 2 1 4 4 C 1.53003 * 109.47093 * 119.99987 * 2 1 3 5 5 C 1.53007 * 109.47406 * 239.99690 * 2 1 3 6 6 H 1.09001 * 110.88919 * 185.18770 * 5 2 1 7 7 C 1.55159 * 111.00275 * 309.11350 * 5 2 1 8 8 C 1.54325 * 102.94005 * 153.57172 * 7 5 2 9 9 N 1.47019 * 107.27079 * 337.80539 * 8 7 5 10 10 C 1.34775 * 125.64637 * 178.90366 * 9 8 7 11 11 O 1.21287 * 120.00036 * 180.02562 * 10 9 8 12 12 C 1.50705 * 120.00436 * 0.04045 * 10 9 8 13 13 C 1.52995 * 109.47627 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47294 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47200 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00100 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99833 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99979 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99751 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47087 * 89.99442 * 19 17 15 21 21 H 1.48497 * 109.47424 * 209.99514 * 19 17 15 22 22 H 1.48503 * 109.47305 * 329.99575 * 19 17 15 23 23 C 1.47421 * 108.70835 * 358.94351 * 9 8 7 24 24 H 1.09004 * 109.46994 * 66.47344 * 1 2 3 25 25 H 1.09001 * 109.47095 * 306.47113 * 1 2 3 26 26 H 1.09004 * 109.47183 * 186.47197 * 1 2 3 27 27 H 1.08998 * 109.47036 * 59.99916 * 3 2 1 28 28 H 1.08993 * 109.47450 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46896 * 300.00387 * 3 2 1 30 30 H 1.09002 * 109.47201 * 59.99785 * 4 2 1 31 31 H 1.09006 * 109.46994 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47122 * 299.99884 * 4 2 1 33 33 H 1.08997 * 110.71881 * 271.93381 * 7 5 2 34 34 H 1.09006 * 110.71885 * 35.20851 * 7 5 2 35 35 H 1.08996 * 109.88101 * 218.39057 * 8 7 5 36 36 H 1.09003 * 110.01167 * 97.29443 * 8 7 5 37 37 H 1.08997 * 109.46777 * 300.00614 * 12 10 9 38 38 H 1.09003 * 109.46647 * 59.99999 * 12 10 9 39 39 H 1.09003 * 109.47256 * 300.00421 * 13 12 10 40 40 H 1.09003 * 109.47045 * 60.00319 * 13 12 10 41 41 H 1.09003 * 109.46896 * 300.00130 * 14 13 12 42 42 H 1.08993 * 109.47143 * 59.99935 * 14 13 12 43 43 H 0.97001 * 119.99383 * 180.02562 * 18 17 15 44 44 H 1.09006 * 110.36638 * 265.28931 * 23 9 8 45 45 H 1.09000 * 110.46408 * 143.01222 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0400 -0.7213 -1.2492 6 1 3.1258 -0.8152 -1.2277 7 6 1.3639 -2.1091 -1.4051 8 6 1.4299 -2.3568 -2.9269 9 7 1.5714 -1.0456 -3.5768 10 6 1.6841 -0.8344 -4.9031 11 8 1.7967 0.2953 -5.3299 12 6 1.6700 -2.0019 -5.8560 13 6 1.8117 -1.4907 -7.2911 14 6 1.7967 -2.6760 -8.2584 15 6 1.9369 -2.1725 -9.6719 16 1 2.0273 -1.1132 -9.8614 17 6 1.9488 -3.0644 -10.7234 18 7 1.8383 -4.3544 -10.4927 19 14 2.1219 -2.4403 -12.4755 20 1 3.5606 -2.3759 -12.8381 21 1 1.4188 -3.3638 -13.4017 22 1 1.5241 -1.0849 -12.5795 23 6 1.5705 -0.0001 -2.5374 24 1 -0.3633 0.4102 -0.9423 25 1 -0.3633 0.6109 0.8264 26 1 -0.3634 -1.0212 0.1158 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 -1.7489 1.2493 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -0.2074 2.1392 33 1 1.9232 -2.8733 -0.8654 34 1 0.3290 -2.0743 -1.0645 35 1 0.5131 -2.8405 -3.2639 36 1 2.2891 -2.9836 -3.1659 37 1 2.4994 -2.6700 -5.6242 38 1 0.7288 -2.5423 -5.7544 39 1 0.9820 -0.8228 -7.5225 40 1 2.7527 -0.9501 -7.3929 41 1 2.6262 -3.3442 -8.0271 42 1 0.8556 -3.2163 -8.1565 43 1 1.8471 -4.9818 -11.2324 44 1 0.5656 0.4004 -2.4031 45 1 2.2645 0.7984 -2.7995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594004041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:28 Heat of formation + Delta-G solvation = -70.045394 kcal Electronic energy + Delta-G solvation = -20610.078834 eV Core-core repulsion = 17626.170852 eV Total energy + Delta-G solvation = -2983.907981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36390 -38.51901 -35.77389 -34.15374 -32.03547 -30.89399 -29.33801 -27.70001 -27.59186 -27.32037 -24.37228 -22.83500 -22.01729 -20.20399 -18.98133 -18.56325 -16.87435 -16.60338 -16.12389 -15.34508 -14.84550 -14.58363 -14.37634 -14.29537 -14.21953 -13.70452 -13.42313 -12.76205 -12.70453 -12.43404 -12.35605 -12.19213 -11.94488 -11.91826 -11.77101 -11.56836 -11.33176 -11.28683 -10.78348 -10.76193 -10.69851 -10.59642 -10.52952 -10.50307 -9.63029 -9.62830 -9.22963 -8.98164 -8.52989 -8.29402 -5.95207 -3.96383 2.96404 3.11520 3.36647 3.42230 3.47410 4.15692 4.28258 4.38893 4.51517 4.69565 4.74477 4.88230 5.06970 5.12758 5.13514 5.26945 5.33343 5.38280 5.40840 5.43844 5.51060 5.56671 5.58658 5.65599 5.70298 5.73980 5.76620 5.80160 5.83298 5.88873 5.92708 6.05293 6.18052 6.26374 6.42085 6.77122 6.97879 7.19834 7.65169 7.74585 7.87241 8.05910 8.47211 8.50240 9.10762 9.67389 11.16387 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.050305 B = 0.002969 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.469376 B = 9428.019580 C = 9755.608985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.091 4.091 6 H 0.084 0.916 7 C -0.132 4.132 8 C 0.101 3.899 9 N -0.628 5.628 10 C 0.528 3.472 11 O -0.538 6.538 12 C -0.133 4.133 13 C -0.095 4.095 14 C 0.021 3.979 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.107 3.893 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.068 0.932 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.420 4.734 26.196 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.058 4.058 3 C -0.202 4.202 4 C -0.197 4.197 5 C -0.111 4.111 6 H 0.102 0.898 7 C -0.169 4.169 8 C -0.023 4.023 9 N -0.364 5.364 10 C 0.318 3.682 11 O -0.415 6.415 12 C -0.172 4.172 13 C -0.133 4.133 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.015 4.015 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.365 5.189 25.757 26.309 hybrid contribution 0.111 0.105 -0.937 0.949 sum -1.253 5.295 24.820 25.409 Atomic orbital electron populations 1.22065 0.94508 1.01975 1.02106 1.20419 0.95746 0.95424 0.94190 1.21921 1.01142 0.95184 1.02003 1.21867 1.00994 1.00250 0.96636 1.22421 1.00407 0.94764 0.93466 0.89779 1.22840 1.02164 0.97189 0.94754 1.22016 1.01926 0.85753 0.92580 1.48642 1.74325 1.07806 1.05633 1.20994 0.74813 0.91674 0.80707 1.90676 1.49260 1.25039 1.76482 1.21821 1.03537 0.95618 0.96272 1.21457 1.01566 1.00051 0.90254 1.19125 0.97091 0.92373 0.93024 1.21282 1.49426 0.93298 0.91537 0.92574 1.25022 0.95430 0.94888 0.99203 1.69967 1.51040 1.01231 1.31564 0.86590 0.78136 0.78726 0.84552 1.20680 1.21267 1.19838 1.22307 1.01374 0.91568 0.86264 0.92073 0.92633 0.92127 0.92601 0.92548 0.92263 0.92451 0.92641 0.92643 0.90122 0.89876 0.91263 0.91263 0.89521 0.89520 0.92724 0.92728 0.96636 0.96617 0.93092 0.91400 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 7.69 37.15 0.29 -0.70 16 2 C -0.06 -0.39 0.60 -154.51 -0.09 -0.48 16 3 C -0.15 -1.01 8.23 37.16 0.31 -0.70 16 4 C -0.14 -0.81 8.35 37.16 0.31 -0.50 16 5 C -0.09 -0.75 2.39 -88.46 -0.21 -0.96 16 6 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 7 C -0.13 -0.98 5.57 -24.89 -0.14 -1.12 16 8 C 0.10 1.00 6.49 -3.06 -0.02 0.98 16 9 N -0.63 -8.50 3.33 -170.52 -0.57 -9.07 16 10 C 0.53 9.31 7.85 -10.98 -0.09 9.22 16 11 O -0.54 -11.56 16.24 5.55 0.09 -11.47 16 12 C -0.13 -2.35 4.89 -27.88 -0.14 -2.49 16 13 C -0.10 -2.14 4.44 -26.73 -0.12 -2.26 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -15.25 9.11 -34.44 -0.31 -15.57 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 19 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.11 1.22 5.12 -2.53 -0.01 1.21 16 24 H 0.06 0.46 5.98 -51.93 -0.31 0.15 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.37 6.34 -51.93 -0.33 0.04 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.46 7.19 -51.93 -0.37 0.08 16 30 H 0.06 0.31 7.61 -51.93 -0.40 -0.09 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.56 5.62 -51.93 -0.29 0.27 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 40 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.07 0.76 5.87 -51.93 -0.30 0.45 16 45 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -33.43 349.52 -8.26 -41.69 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -8.30 Total: -5.59 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.47 Total: -11.41 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.17 Total: -35.77 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.43 -8.26 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594004041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.358 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds