Wall clock time and date at job start Mon Mar 30 2020 07:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47504 * 2 1 4 4 C 1.53003 * 109.47093 * 119.99987 * 2 1 3 5 5 C 1.53007 * 109.47406 * 239.99690 * 2 1 3 6 6 H 1.09001 * 110.88919 * 185.18770 * 5 2 1 7 7 C 1.55159 * 111.00275 * 309.11350 * 5 2 1 8 8 C 1.54325 * 102.94005 * 153.57172 * 7 5 2 9 9 N 1.47019 * 107.27079 * 337.80539 * 8 7 5 10 10 C 1.34775 * 125.64637 * 178.90366 * 9 8 7 11 11 O 1.21287 * 120.00036 * 180.02562 * 10 9 8 12 12 C 1.50705 * 120.00436 * 0.04045 * 10 9 8 13 13 C 1.52995 * 109.47627 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47294 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47200 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00100 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99833 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99979 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99751 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47087 * 89.99442 * 19 17 15 21 21 H 1.48497 * 109.47424 * 209.99514 * 19 17 15 22 22 H 1.48503 * 109.47305 * 329.99575 * 19 17 15 23 23 C 1.47421 * 108.70835 * 358.94351 * 9 8 7 24 24 H 1.09004 * 109.46994 * 66.47344 * 1 2 3 25 25 H 1.09001 * 109.47095 * 306.47113 * 1 2 3 26 26 H 1.09004 * 109.47183 * 186.47197 * 1 2 3 27 27 H 1.08998 * 109.47036 * 59.99916 * 3 2 1 28 28 H 1.08993 * 109.47450 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46896 * 300.00387 * 3 2 1 30 30 H 1.09002 * 109.47201 * 59.99785 * 4 2 1 31 31 H 1.09006 * 109.46994 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47122 * 299.99884 * 4 2 1 33 33 H 1.08997 * 110.71881 * 271.93381 * 7 5 2 34 34 H 1.09006 * 110.71885 * 35.20851 * 7 5 2 35 35 H 1.08996 * 109.88101 * 218.39057 * 8 7 5 36 36 H 1.09003 * 110.01167 * 97.29443 * 8 7 5 37 37 H 1.08997 * 109.46777 * 300.00614 * 12 10 9 38 38 H 1.09003 * 109.46647 * 59.99999 * 12 10 9 39 39 H 1.09003 * 109.47256 * 300.00421 * 13 12 10 40 40 H 1.09003 * 109.47045 * 60.00319 * 13 12 10 41 41 H 1.09003 * 109.46896 * 300.00130 * 14 13 12 42 42 H 1.08993 * 109.47143 * 59.99935 * 14 13 12 43 43 H 0.97001 * 119.99383 * 180.02562 * 18 17 15 44 44 H 1.09006 * 110.36638 * 265.28931 * 23 9 8 45 45 H 1.09000 * 110.46408 * 143.01222 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0400 -0.7213 -1.2492 6 1 3.1258 -0.8152 -1.2277 7 6 1.3639 -2.1091 -1.4051 8 6 1.4299 -2.3568 -2.9269 9 7 1.5714 -1.0456 -3.5768 10 6 1.6841 -0.8344 -4.9031 11 8 1.7967 0.2953 -5.3299 12 6 1.6700 -2.0019 -5.8560 13 6 1.8117 -1.4907 -7.2911 14 6 1.7967 -2.6760 -8.2584 15 6 1.9369 -2.1725 -9.6719 16 1 2.0273 -1.1132 -9.8614 17 6 1.9488 -3.0644 -10.7234 18 7 1.8383 -4.3544 -10.4927 19 14 2.1219 -2.4403 -12.4755 20 1 3.5606 -2.3759 -12.8381 21 1 1.4188 -3.3638 -13.4017 22 1 1.5241 -1.0849 -12.5795 23 6 1.5705 -0.0001 -2.5374 24 1 -0.3633 0.4102 -0.9423 25 1 -0.3633 0.6109 0.8264 26 1 -0.3634 -1.0212 0.1158 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 -1.7489 1.2493 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -0.2074 2.1392 33 1 1.9232 -2.8733 -0.8654 34 1 0.3290 -2.0743 -1.0645 35 1 0.5131 -2.8405 -3.2639 36 1 2.2891 -2.9836 -3.1659 37 1 2.4994 -2.6700 -5.6242 38 1 0.7288 -2.5423 -5.7544 39 1 0.9820 -0.8228 -7.5225 40 1 2.7527 -0.9501 -7.3929 41 1 2.6262 -3.3442 -8.0271 42 1 0.8556 -3.2163 -8.1565 43 1 1.8471 -4.9818 -11.2324 44 1 0.5656 0.4004 -2.4031 45 1 2.2645 0.7984 -2.7995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594004041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:27 Heat of formation + Delta-G solvation = -89.254943 kcal Electronic energy + Delta-G solvation = -20610.911822 eV Core-core repulsion = 17626.170852 eV Total energy + Delta-G solvation = -2984.740970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.36289 -39.61437 -36.68162 -36.13959 -34.05178 -31.88552 -30.40133 -29.18759 -28.18961 -27.91669 -26.06107 -24.20027 -22.73807 -22.02823 -20.17353 -19.27022 -18.51460 -17.94670 -17.50585 -16.67314 -16.48805 -15.92610 -15.37599 -15.20854 -14.91155 -14.77048 -14.40597 -14.22045 -13.85882 -13.73736 -13.64908 -13.15484 -13.04545 -12.93038 -12.65161 -12.59621 -12.52030 -12.45791 -12.40887 -12.20268 -11.90617 -11.58682 -11.49305 -11.35332 -11.30207 -11.27883 -11.19963 -10.77636 -10.55467 -9.64221 -8.21330 -6.31468 1.38799 1.40147 1.51768 1.58900 1.98961 2.41055 3.11481 3.39684 3.60589 3.76427 3.83084 4.09210 4.14517 4.18196 4.22709 4.30627 4.38691 4.42426 4.59640 4.67914 4.76162 4.78210 4.88431 4.89355 4.91146 4.94350 5.00784 5.05102 5.08780 5.14653 5.15927 5.16906 5.23058 5.26564 5.36382 5.45817 5.52081 5.55018 5.60870 5.72832 5.84547 6.25843 6.47195 6.83439 7.13879 7.37139 8.90364 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.050305 B = 0.002969 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.469376 B = 9428.019580 C = 9755.608985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.082 4.082 6 H 0.083 0.917 7 C -0.122 4.122 8 C 0.088 3.912 9 N -0.622 5.622 10 C 0.524 3.476 11 O -0.589 6.589 12 C -0.122 4.122 13 C -0.082 4.082 14 C 0.028 3.972 15 C -0.549 4.549 16 H 0.050 0.950 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.269 1.269 23 C 0.102 3.898 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.265 0.735 44 H 0.071 0.929 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 3.988 27.703 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.053 4.053 3 C -0.204 4.204 4 C -0.194 4.194 5 C -0.101 4.101 6 H 0.101 0.899 7 C -0.159 4.159 8 C -0.033 4.033 9 N -0.356 5.356 10 C 0.315 3.685 11 O -0.470 6.470 12 C -0.162 4.162 13 C -0.120 4.120 14 C -0.009 4.009 15 C -0.587 4.587 16 H 0.069 0.931 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.193 1.193 23 C -0.020 4.020 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.537 4.416 27.321 27.718 hybrid contribution 0.154 0.325 -1.344 1.391 sum -1.384 4.741 25.977 26.442 Atomic orbital electron populations 1.22062 0.94218 1.02658 1.01660 1.20399 0.95905 0.95056 0.93979 1.21937 1.01094 0.95574 1.01791 1.21841 1.01020 1.00619 0.95962 1.22382 1.00426 0.95045 0.92253 0.89896 1.22867 1.03203 0.96974 0.92850 1.22373 1.02814 0.83968 0.94191 1.48645 1.72024 1.10162 1.04727 1.20827 0.74896 0.90630 0.82149 1.90652 1.52049 1.26546 1.77709 1.21630 1.05243 0.95972 0.93350 1.21170 1.00142 0.98016 0.92679 1.18997 0.95542 0.93241 0.93117 1.21683 1.50275 0.93331 0.93409 0.93135 1.25912 0.94674 0.95049 1.03819 1.70067 1.51269 1.02362 1.33209 0.85486 0.78584 0.78348 0.78876 1.19646 1.20145 1.19345 1.22477 1.01245 0.91088 0.87181 0.93439 0.91930 0.91109 0.91647 0.92666 0.93659 0.91532 0.92628 0.92018 0.87731 0.88731 0.90304 0.90408 0.87735 0.87713 0.94198 0.94194 0.98043 0.98017 0.92594 0.91101 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 7.69 71.98 0.55 -1.09 16 2 C -0.05 -0.60 0.60 -52.18 -0.03 -0.64 16 3 C -0.15 -1.89 8.23 71.98 0.59 -1.30 16 4 C -0.14 -1.17 8.35 71.98 0.60 -0.57 16 5 C -0.08 -1.19 2.39 -9.40 -0.02 -1.21 16 6 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 7 C -0.12 -1.42 5.57 31.78 0.18 -1.24 16 8 C 0.09 1.56 6.49 86.73 0.56 2.12 16 9 N -0.62 -16.39 3.33 -811.78 -2.70 -19.09 16 10 C 0.52 18.65 7.85 87.66 0.69 19.34 16 11 O -0.59 -26.20 16.24 -3.05 -0.05 -26.24 16 12 C -0.12 -4.32 4.89 29.85 0.15 -4.18 16 13 C -0.08 -3.79 4.44 30.59 0.14 -3.66 16 14 C 0.03 1.53 4.97 29.85 0.15 1.68 16 15 C -0.55 -33.00 9.11 25.60 0.23 -32.77 16 16 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 17 C 0.00 0.20 5.46 84.65 0.46 0.67 16 18 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 19 Si 0.96 45.80 29.54 68.60 2.03 47.82 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 C 0.10 2.29 5.12 86.86 0.44 2.74 16 24 H 0.05 0.66 5.98 -2.38 -0.01 0.64 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.64 6.34 -2.38 -0.02 0.62 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.04 0.70 7.19 -2.39 -0.02 0.68 16 30 H 0.07 0.47 7.61 -2.39 -0.02 0.45 16 31 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 0.93 5.62 -2.38 -0.01 0.92 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 40 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 41 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.07 1.57 5.87 -2.38 -0.01 1.56 16 45 H 0.05 1.42 7.94 -2.39 -0.02 1.40 16 Total: -1.00 -73.25 349.52 5.18 -68.07 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.93 Total: 6.25 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 4.69 Total: -20.10 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -2.42 Total: -75.79 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -73.25 5.18 -68.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594004041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.187 kcal (2) G-P(sol) polarization free energy of solvation -73.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds