Wall clock time and date at job start Mon Mar 30 2020 07:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46713 * 2 1 4 4 C 1.52998 * 109.47114 * 119.99546 * 2 1 3 5 5 C 1.52997 * 109.47321 * 300.00427 * 4 2 1 6 6 N 1.46896 * 109.47261 * 180.02562 * 5 4 2 7 7 C 1.48529 * 111.00073 * 52.60606 * 6 5 4 8 8 C 1.54943 * 103.23110 * 159.72217 * 7 6 5 9 9 C 1.54593 * 102.91873 * 322.58517 * 8 7 6 10 10 O 1.42901 * 110.39196 * 262.99801 * 9 8 7 11 11 C 1.50700 * 110.31274 * 140.87331 * 9 8 7 12 12 H 1.08003 * 119.99940 * 244.28523 * 11 9 8 13 13 C 1.37876 * 119.99963 * 64.27637 * 11 9 8 14 14 N 1.31512 * 119.99843 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99976 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46756 * 90.00846 * 15 13 11 17 17 H 1.48503 * 109.47339 * 210.00199 * 15 13 11 18 18 H 1.48493 * 109.47442 * 330.00909 * 15 13 11 19 19 C 1.47906 * 111.00163 * 169.99916 * 6 5 4 20 20 C 1.52997 * 109.47375 * 239.99940 * 2 1 3 21 21 C 1.53005 * 117.50108 * 128.74712 * 20 2 1 22 22 C 1.53000 * 117.49893 * 60.08493 * 20 2 1 23 23 H 1.08995 * 109.47399 * 300.00234 * 1 2 3 24 24 H 1.08999 * 109.47341 * 60.00579 * 1 2 3 25 25 H 1.09006 * 109.46749 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46916 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47147 * 299.99582 * 3 2 1 28 28 H 1.08995 * 109.47379 * 59.99754 * 3 2 1 29 29 H 1.09002 * 109.47159 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.47055 * 60.00630 * 4 2 1 31 31 H 1.09002 * 109.47127 * 59.99829 * 5 4 2 32 32 H 1.09006 * 109.46990 * 300.00115 * 5 4 2 33 33 H 1.08995 * 110.67216 * 41.28703 * 7 6 5 34 34 H 1.09004 * 110.80922 * 278.21881 * 7 6 5 35 35 H 1.08999 * 110.72722 * 204.22642 * 8 7 6 36 36 H 1.09004 * 110.87493 * 81.01227 * 8 7 6 37 37 H 0.96699 * 113.99877 * 295.76904 * 10 9 8 38 38 H 0.96999 * 119.99895 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.91583 * 94.80499 * 19 6 5 40 40 H 1.09004 * 109.91554 * 333.51082 * 19 6 5 41 41 H 1.09001 * 115.54645 * 274.41463 * 20 2 1 42 42 H 1.09005 * 117.49500 * 359.97438 * 21 20 2 43 43 H 1.08991 * 117.50135 * 145.01908 * 21 20 2 44 44 H 1.09005 * 117.49885 * 214.97813 * 22 20 2 45 45 H 1.08993 * 117.49991 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5299 0.0001 2.4985 6 7 2.0201 -0.6919 3.6979 7 6 3.4941 -0.8676 3.6461 8 6 3.8760 -1.0990 5.1298 9 6 2.9219 -0.1455 5.8851 10 8 3.5841 1.0838 6.1888 11 6 2.4243 -0.7969 7.1496 12 1 1.3737 -1.0188 7.2654 13 6 3.3103 -1.1096 8.1587 14 7 4.5895 -0.8390 8.0178 15 14 2.6934 -1.9163 9.7265 16 1 2.7334 -3.3928 9.5721 17 1 3.5591 -1.5140 10.8640 18 1 1.2974 -1.4838 9.9896 19 6 1.7514 0.1033 4.9157 20 6 2.0400 -0.7212 -1.2492 21 6 3.0764 0.0040 -2.1101 22 6 1.6375 -0.1484 -2.6096 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8901 28 1 1.6765 1.9564 0.8899 29 1 3.1300 -0.7207 1.2495 30 1 1.6767 -1.7488 1.2493 31 1 0.4399 0.0001 2.4984 32 1 1.8932 1.0278 2.4984 33 1 3.9754 0.0312 3.2608 34 1 3.7597 -1.7344 3.0409 35 1 4.9158 -0.8249 5.3078 36 1 3.6963 -2.1342 5.4202 37 1 4.3309 0.9887 6.7958 38 1 5.2128 -1.0587 8.7278 39 1 0.8161 -0.2209 5.3720 40 1 1.6971 1.1623 4.6631 41 1 2.1254 -1.8046 -1.1646 42 1 3.3945 0.9951 -1.7866 43 1 3.8432 -0.6023 -2.5921 44 1 1.4583 -0.8548 -3.4201 45 1 1.0089 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594016482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:52 Heat of formation + Delta-G solvation = -35.788504 kcal Electronic energy + Delta-G solvation = -21426.772052 eV Core-core repulsion = 18444.349561 eV Total energy + Delta-G solvation = -2982.422491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.49731 -38.15105 -35.34155 -33.73225 -32.03002 -30.16304 -28.25085 -27.45537 -27.13841 -24.81731 -23.81928 -22.33994 -21.70087 -19.81597 -19.34295 -18.13555 -17.05185 -16.39474 -15.18588 -15.08355 -14.75660 -14.68066 -14.10867 -13.92102 -13.71313 -13.19615 -12.81646 -12.54913 -12.20195 -12.05908 -11.92505 -11.78653 -11.64246 -11.29047 -11.13184 -11.01473 -10.99763 -10.86894 -10.57184 -10.45071 -10.44848 -10.34771 -10.22481 -10.07901 -9.90281 -9.79040 -9.09758 -8.54742 -8.04922 -7.67534 -6.15902 -4.21753 3.26561 3.33286 3.37576 3.70447 4.35031 4.42092 4.65936 4.79717 4.90480 4.96413 5.11583 5.13547 5.16041 5.45815 5.49621 5.53531 5.59764 5.67102 5.72027 5.79229 5.88907 5.93321 5.96889 6.00022 6.00948 6.06865 6.15563 6.19172 6.24725 6.27933 6.31863 6.45876 6.51427 6.54095 6.60988 6.98973 7.13047 7.35939 7.57664 7.73548 7.80807 7.91534 8.21459 8.79839 9.45292 9.57613 10.91773 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042362 B = 0.003836 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.813638 B = 7298.003373 C = 7420.185278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.032 4.032 3 C -0.148 4.148 4 C -0.103 4.103 5 C 0.045 3.955 6 N -0.515 5.515 7 C 0.033 3.967 8 C -0.119 4.119 9 C 0.243 3.757 10 O -0.596 6.596 11 C -0.527 4.527 12 H 0.062 0.938 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.900 3.100 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.054 3.946 20 C -0.137 4.137 21 C -0.186 4.186 22 C -0.182 4.182 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.383 0.617 38 H 0.266 0.734 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.694 1.330 -16.864 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.205 4.205 4 C -0.141 4.141 5 C -0.084 4.084 6 N -0.240 5.240 7 C -0.094 4.094 8 C -0.158 4.158 9 C 0.203 3.797 10 O -0.405 6.405 11 C -0.566 4.566 12 H 0.080 0.920 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.728 3.272 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.073 4.073 20 C -0.155 4.155 21 C -0.223 4.223 22 C -0.218 4.218 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.234 0.766 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.261 1.064 -17.146 17.700 hybrid contribution 0.628 0.020 1.137 1.299 sum -3.634 1.084 -16.009 16.452 Atomic orbital electron populations 1.21890 0.94431 1.01923 1.01474 1.20043 0.95384 0.94756 0.93095 1.22069 1.01157 0.95658 1.01584 1.21637 1.00765 0.99507 0.92207 1.22413 1.00093 0.95508 0.90341 1.64826 1.12980 1.44571 1.01576 1.23251 0.88038 0.98712 0.99437 1.22976 1.00026 1.01528 0.91232 1.19356 0.87199 0.81527 0.91646 1.86082 1.50875 1.34006 1.69579 1.21724 0.94721 1.39197 1.00912 0.92005 1.25015 0.94782 0.94930 0.98684 1.69623 1.01960 1.48551 1.33987 0.86460 0.78843 0.79530 0.82360 1.20552 1.21183 1.19814 1.22860 0.99939 0.94432 0.90068 1.22353 1.03197 0.98943 0.91051 1.23140 0.92327 1.02651 1.04179 1.22922 0.98227 1.03236 0.97465 0.92194 0.93057 0.92542 0.92350 0.92991 0.92129 0.91780 0.91303 0.91193 0.95023 0.95054 0.91830 0.91892 0.91504 0.76559 0.92398 0.90510 0.94775 0.87985 0.88206 0.89305 0.89280 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 7.96 37.16 0.30 -1.16 16 2 C -0.03 -0.35 0.65 -154.51 -0.10 -0.46 16 3 C -0.15 -1.61 6.72 37.16 0.25 -1.36 16 4 C -0.10 -1.39 3.91 -26.73 -0.10 -1.50 16 5 C 0.04 0.71 4.32 -3.83 -0.02 0.70 16 6 N -0.52 -10.20 5.40 -230.45 -1.24 -11.44 16 7 C 0.03 0.67 5.10 -1.90 -0.01 0.66 16 8 C -0.12 -2.82 5.50 -24.87 -0.14 -2.96 16 9 C 0.24 6.19 0.99 -90.41 -0.09 6.10 16 10 O -0.60 -15.92 12.93 -35.23 -0.46 -16.37 16 11 C -0.53 -14.47 8.10 -34.44 -0.28 -14.75 16 12 H 0.06 1.69 7.34 -52.48 -0.39 1.31 16 13 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 14 N -0.90 -24.43 10.88 55.43 0.60 -23.83 16 15 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.05 1.23 6.17 -2.75 -0.02 1.21 16 20 C -0.14 -1.39 5.14 -90.62 -0.47 -1.85 16 21 C -0.19 -1.73 9.57 -26.69 -0.26 -1.99 16 22 C -0.18 -1.60 9.39 -26.69 -0.25 -1.85 16 23 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 24 H 0.05 0.48 7.29 -51.93 -0.38 0.10 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.65 6.97 -51.93 -0.36 0.29 16 27 H 0.05 0.50 7.07 -51.93 -0.37 0.13 16 28 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 29 H 0.06 0.91 6.79 -51.93 -0.35 0.56 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.06 6.43 -51.93 -0.33 0.73 16 32 H 0.03 0.52 6.10 -51.93 -0.32 0.21 16 33 H 0.03 0.62 8.00 -51.93 -0.42 0.21 16 34 H 0.06 1.16 7.67 -51.93 -0.40 0.76 16 35 H 0.06 1.55 8.06 -51.93 -0.42 1.13 16 36 H 0.07 1.68 7.86 -51.93 -0.41 1.27 16 37 H 0.38 10.38 7.05 45.56 0.32 10.70 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 39 H 0.08 1.74 7.39 -51.93 -0.38 1.36 16 40 H 0.03 0.76 7.39 -51.93 -0.38 0.38 16 41 H 0.10 1.05 8.11 -51.93 -0.42 0.62 16 42 H 0.10 0.93 5.85 -51.93 -0.30 0.63 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.79 7.07 -51.93 -0.37 0.42 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -27.46 335.02 -9.51 -36.98 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -7.17 Total: 11.10 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -1.27 Total: -17.49 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: -0.64 Total: -35.27 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.46 Total: -16.37 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.46 -9.51 -36.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594016482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.187 kcal (2) G-P(sol) polarization free energy of solvation -27.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds