Wall clock time and date at job start Mon Mar 30 2020 07:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46713 * 2 1 4 4 C 1.52998 * 109.47114 * 119.99546 * 2 1 3 5 5 C 1.52997 * 109.47321 * 300.00427 * 4 2 1 6 6 N 1.46896 * 109.47261 * 180.02562 * 5 4 2 7 7 C 1.48529 * 111.00073 * 52.60606 * 6 5 4 8 8 C 1.54943 * 103.23110 * 159.72217 * 7 6 5 9 9 C 1.54593 * 102.91873 * 322.58517 * 8 7 6 10 10 O 1.42901 * 110.39196 * 262.99801 * 9 8 7 11 11 C 1.50700 * 110.31274 * 140.87331 * 9 8 7 12 12 H 1.08003 * 119.99940 * 244.28523 * 11 9 8 13 13 C 1.37876 * 119.99963 * 64.27637 * 11 9 8 14 14 N 1.31512 * 119.99843 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99976 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46756 * 90.00846 * 15 13 11 17 17 H 1.48503 * 109.47339 * 210.00199 * 15 13 11 18 18 H 1.48493 * 109.47442 * 330.00909 * 15 13 11 19 19 C 1.47906 * 111.00163 * 169.99916 * 6 5 4 20 20 C 1.52997 * 109.47375 * 239.99940 * 2 1 3 21 21 C 1.53005 * 117.50108 * 128.74712 * 20 2 1 22 22 C 1.53000 * 117.49893 * 60.08493 * 20 2 1 23 23 H 1.08995 * 109.47399 * 300.00234 * 1 2 3 24 24 H 1.08999 * 109.47341 * 60.00579 * 1 2 3 25 25 H 1.09006 * 109.46749 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46916 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47147 * 299.99582 * 3 2 1 28 28 H 1.08995 * 109.47379 * 59.99754 * 3 2 1 29 29 H 1.09002 * 109.47159 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.47055 * 60.00630 * 4 2 1 31 31 H 1.09002 * 109.47127 * 59.99829 * 5 4 2 32 32 H 1.09006 * 109.46990 * 300.00115 * 5 4 2 33 33 H 1.08995 * 110.67216 * 41.28703 * 7 6 5 34 34 H 1.09004 * 110.80922 * 278.21881 * 7 6 5 35 35 H 1.08999 * 110.72722 * 204.22642 * 8 7 6 36 36 H 1.09004 * 110.87493 * 81.01227 * 8 7 6 37 37 H 0.96699 * 113.99877 * 295.76904 * 10 9 8 38 38 H 0.96999 * 119.99895 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.91583 * 94.80499 * 19 6 5 40 40 H 1.09004 * 109.91554 * 333.51082 * 19 6 5 41 41 H 1.09001 * 115.54645 * 274.41463 * 20 2 1 42 42 H 1.09005 * 117.49500 * 359.97438 * 21 20 2 43 43 H 1.08991 * 117.50135 * 145.01908 * 21 20 2 44 44 H 1.09005 * 117.49885 * 214.97813 * 22 20 2 45 45 H 1.08993 * 117.49991 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5299 0.0001 2.4985 6 7 2.0201 -0.6919 3.6979 7 6 3.4941 -0.8676 3.6461 8 6 3.8760 -1.0990 5.1298 9 6 2.9219 -0.1455 5.8851 10 8 3.5841 1.0838 6.1888 11 6 2.4243 -0.7969 7.1496 12 1 1.3737 -1.0188 7.2654 13 6 3.3103 -1.1096 8.1587 14 7 4.5895 -0.8390 8.0178 15 14 2.6934 -1.9163 9.7265 16 1 2.7334 -3.3928 9.5721 17 1 3.5591 -1.5140 10.8640 18 1 1.2974 -1.4838 9.9896 19 6 1.7514 0.1033 4.9157 20 6 2.0400 -0.7212 -1.2492 21 6 3.0764 0.0040 -2.1101 22 6 1.6375 -0.1484 -2.6096 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8901 28 1 1.6765 1.9564 0.8899 29 1 3.1300 -0.7207 1.2495 30 1 1.6767 -1.7488 1.2493 31 1 0.4399 0.0001 2.4984 32 1 1.8932 1.0278 2.4984 33 1 3.9754 0.0312 3.2608 34 1 3.7597 -1.7344 3.0409 35 1 4.9158 -0.8249 5.3078 36 1 3.6963 -2.1342 5.4202 37 1 4.3309 0.9887 6.7958 38 1 5.2128 -1.0587 8.7278 39 1 0.8161 -0.2209 5.3720 40 1 1.6971 1.1623 4.6631 41 1 2.1254 -1.8046 -1.1646 42 1 3.3945 0.9951 -1.7866 43 1 3.8432 -0.6023 -2.5921 44 1 1.4583 -0.8548 -3.4201 45 1 1.0089 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594016482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:51 Heat of formation + Delta-G solvation = -52.776956 kcal Electronic energy + Delta-G solvation = -21427.508727 eV Core-core repulsion = 18444.349561 eV Total energy + Delta-G solvation = -2983.159166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.61453 -39.64264 -36.93676 -34.96113 -34.13039 -31.72220 -29.99425 -28.67241 -28.28915 -26.35461 -25.27937 -23.05666 -22.98570 -21.26606 -21.23776 -19.15658 -19.00021 -17.44661 -16.93770 -16.53016 -16.40208 -15.76560 -15.71963 -15.35677 -15.01291 -14.37510 -14.10642 -13.97245 -13.67727 -13.57621 -13.38054 -13.20919 -12.87687 -12.71877 -12.60501 -12.40738 -12.34202 -12.27173 -12.02967 -11.97795 -11.83094 -11.75391 -11.58338 -11.30404 -11.11757 -10.88457 -10.66819 -10.59512 -10.09243 -9.28607 -8.21408 -6.35270 1.41029 1.42478 1.52599 2.39638 2.93857 3.01480 3.16425 3.66725 3.91245 3.93058 4.02559 4.15075 4.21345 4.22858 4.31937 4.34424 4.43009 4.48904 4.55778 4.66040 4.68387 4.72577 4.81045 4.84150 4.87962 5.00475 5.04867 5.09422 5.10856 5.14194 5.21086 5.24539 5.27819 5.33491 5.40536 5.43396 5.52207 5.56613 5.60565 5.77303 6.00624 6.15890 6.29309 6.69069 7.34764 7.44738 8.84727 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042362 B = 0.003836 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.813638 B = 7298.003373 C = 7420.185278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.026 4.026 3 C -0.146 4.146 4 C -0.095 4.095 5 C 0.047 3.953 6 N -0.519 5.519 7 C 0.046 3.954 8 C -0.112 4.112 9 C 0.226 3.774 10 O -0.603 6.603 11 C -0.555 4.555 12 H 0.054 0.946 13 C 0.027 3.973 14 N -0.916 5.916 15 Si 0.962 3.038 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.273 1.273 19 C 0.062 3.938 20 C -0.149 4.149 21 C -0.189 4.189 22 C -0.170 4.170 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.034 0.966 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.378 0.622 38 H 0.269 0.731 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 1.014 -18.227 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.203 4.203 4 C -0.133 4.133 5 C -0.081 4.081 6 N -0.243 5.243 7 C -0.081 4.081 8 C -0.151 4.151 9 C 0.186 3.814 10 O -0.412 6.412 11 C -0.594 4.594 12 H 0.072 0.928 13 C -0.173 4.173 14 N -0.556 5.556 15 Si 0.787 3.213 16 H -0.200 1.200 17 H -0.205 1.205 18 H -0.197 1.197 19 C -0.066 4.066 20 C -0.167 4.167 21 C -0.225 4.225 22 C -0.207 4.207 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.228 0.772 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.866 0.751 -18.529 19.172 hybrid contribution 0.823 0.137 1.548 1.758 sum -4.043 0.888 -16.981 17.478 Atomic orbital electron populations 1.21880 0.93852 1.02062 1.01811 1.19960 0.95786 0.94568 0.92369 1.22055 1.00925 0.95579 1.01762 1.21568 1.00261 0.99383 0.92107 1.22503 1.00626 0.95307 0.89664 1.64820 1.12731 1.44738 1.02028 1.23139 0.88207 0.99753 0.97010 1.22767 0.98752 0.99770 0.93777 1.19626 0.88397 0.81338 0.92028 1.86074 1.50747 1.34979 1.69426 1.21974 0.94595 1.40370 1.02425 0.92812 1.25713 0.94978 0.95256 1.01376 1.69702 1.02599 1.48550 1.34747 0.85507 0.78283 0.78661 0.78846 1.20039 1.20515 1.19734 1.22693 0.98506 0.94635 0.90761 1.22287 1.04397 0.98805 0.91205 1.23198 0.92816 1.02571 1.03961 1.22986 0.97734 1.03345 0.96662 0.92876 0.91718 0.92504 0.92721 0.91536 0.93215 0.92435 0.91476 0.90257 0.95328 0.94776 0.89577 0.93419 0.93454 0.77195 0.92135 0.91087 0.94998 0.88180 0.88297 0.88738 0.88232 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.96 71.98 0.57 -2.03 16 2 C -0.03 -0.53 0.65 -52.18 -0.03 -0.56 16 3 C -0.15 -2.92 6.72 71.98 0.48 -2.44 16 4 C -0.10 -2.42 3.91 30.59 0.12 -2.30 16 5 C 0.05 1.43 4.32 86.30 0.37 1.81 16 6 N -0.52 -20.18 5.40 -883.00 -4.76 -24.94 16 7 C 0.05 1.83 5.10 86.65 0.44 2.27 16 8 C -0.11 -5.38 5.50 31.80 0.17 -5.21 16 9 C 0.23 11.68 0.99 -10.66 -0.01 11.67 16 10 O -0.60 -32.81 12.93 -148.98 -1.93 -34.74 16 11 C -0.56 -30.92 8.10 25.60 0.21 -30.72 16 12 H 0.05 2.99 7.34 -2.91 -0.02 2.97 16 13 C 0.03 1.44 5.26 84.65 0.45 1.88 16 14 N -0.92 -50.06 10.88 21.45 0.23 -49.83 16 15 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 C 0.06 2.81 6.17 86.45 0.53 3.34 16 20 C -0.15 -2.68 5.14 -10.79 -0.06 -2.73 16 21 C -0.19 -3.09 9.57 30.62 0.29 -2.80 16 22 C -0.17 -2.53 9.39 30.62 0.29 -2.25 16 23 H 0.05 1.06 6.43 -2.39 -0.02 1.04 16 24 H 0.06 1.04 7.29 -2.39 -0.02 1.02 16 25 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.05 1.13 6.97 -2.39 -0.02 1.11 16 27 H 0.07 1.13 7.07 -2.38 -0.02 1.11 16 28 H 0.05 1.10 6.43 -2.39 -0.02 1.08 16 29 H 0.06 1.53 6.79 -2.39 -0.02 1.52 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 2.30 6.43 -2.39 -0.02 2.29 16 32 H 0.03 0.91 6.10 -2.38 -0.01 0.90 16 33 H 0.03 1.33 8.00 -2.39 -0.02 1.31 16 34 H 0.09 3.01 7.67 -2.39 -0.02 2.99 16 35 H 0.05 2.39 8.06 -2.39 -0.02 2.37 16 36 H 0.05 2.42 7.86 -2.39 -0.02 2.40 16 37 H 0.38 20.97 7.05 -74.06 -0.52 20.45 16 38 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 39 H 0.07 3.26 7.39 -2.39 -0.02 3.24 16 40 H 0.03 1.43 7.39 -2.38 -0.02 1.41 16 41 H 0.10 1.85 8.11 -2.39 -0.02 1.83 16 42 H 0.10 1.64 5.85 -2.38 -0.01 1.63 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.10 1.36 7.07 -2.39 -0.02 1.34 16 Total: -1.00 -57.85 335.02 -0.16 -58.01 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 0.44 Total: 36.39 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 3.83 Total: -30.06 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -4.53 Total: -74.77 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.93 Total: -34.74 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -57.85 -0.16 -58.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594016482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.232 kcal (2) G-P(sol) polarization free energy of solvation -57.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds