Wall clock time and date at job start Mon Mar 30 2020 08:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46911 * 2 1 4 4 C 1.52996 * 109.46969 * 120.00262 * 2 1 3 5 5 C 1.52997 * 109.47131 * 299.99938 * 4 2 1 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00066 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99838 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.47353 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47245 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46946 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00275 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99789 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00144 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99733 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47116 * 59.99782 * 16 14 12 18 18 H 1.48506 * 109.46725 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46762 * 299.99438 * 16 14 12 20 20 C 1.52997 * 109.47143 * 240.00192 * 2 1 3 21 21 C 1.53002 * 117.49807 * 128.74442 * 20 2 1 22 22 C 1.53002 * 117.49655 * 60.08837 * 20 2 1 23 23 H 1.09000 * 109.47312 * 299.99799 * 1 2 3 24 24 H 1.09002 * 109.47067 * 59.99825 * 1 2 3 25 25 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 299.99964 * 3 2 1 28 28 H 1.09004 * 109.46724 * 60.00450 * 3 2 1 29 29 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 30 30 H 1.08996 * 109.47452 * 59.99938 * 4 2 1 31 31 H 1.09001 * 109.47289 * 60.00050 * 5 4 2 32 32 H 1.09004 * 109.47261 * 300.00306 * 5 4 2 33 33 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 34 34 H 1.09004 * 109.47043 * 299.99952 * 9 7 6 35 35 H 1.09001 * 109.47324 * 59.99585 * 9 7 6 36 36 H 1.08996 * 109.46524 * 299.99867 * 10 9 7 37 37 H 1.08992 * 109.46876 * 59.99534 * 10 9 7 38 38 H 1.09004 * 109.47108 * 299.99712 * 11 10 9 39 39 H 1.09001 * 109.47367 * 59.99410 * 11 10 9 40 40 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 41 41 H 1.09001 * 115.55272 * 274.41517 * 20 2 1 42 42 H 1.09003 * 117.49882 * 0.02562 * 21 20 2 43 43 H 1.09001 * 117.49964 * 145.02283 * 21 20 2 44 44 H 1.09010 * 117.49861 * 214.97567 * 22 20 2 45 45 H 1.08997 * 117.50445 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -0.0001 2.4984 6 7 2.0188 -0.6904 3.6946 7 6 1.6928 -0.2302 4.9187 8 8 0.9945 0.7551 5.0300 9 6 2.1961 -0.9400 6.1491 10 6 1.6850 -0.2196 7.3985 11 6 2.1954 -0.9406 8.6476 12 6 1.6925 -0.2307 9.8782 13 1 1.0713 0.6472 9.7791 14 6 2.0263 -0.7013 11.1304 15 7 2.7832 -1.7701 11.2510 16 14 1.4022 0.1783 12.6556 17 1 -0.0827 0.1761 12.6555 18 1 1.8978 -0.5215 13.8681 19 1 1.8952 1.5790 12.6557 20 6 2.0400 -0.7212 -1.2492 21 6 3.0763 0.0041 -2.1101 22 6 1.6374 -0.1482 -2.6096 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 3.1300 -0.7209 1.2494 30 1 1.6767 -1.7489 1.2492 31 1 0.4400 -0.0001 2.4984 32 1 1.8933 1.0276 2.4985 33 1 2.5770 -1.4787 3.6055 34 1 1.8339 -1.9681 6.1492 35 1 3.2861 -0.9389 6.1490 36 1 2.0468 0.8085 7.3985 37 1 0.5951 -0.2212 7.3984 38 1 1.8332 -1.9687 8.6473 39 1 3.2854 -0.9395 8.6479 40 1 3.0177 -2.1013 12.1320 41 1 2.1254 -1.8046 -1.1648 42 1 3.3950 0.9949 -1.7862 43 1 3.8432 -0.6022 -2.5923 44 1 1.4583 -0.8546 -3.4202 45 1 1.0089 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594038393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:10:48 Heat of formation + Delta-G solvation = -51.859846 kcal Electronic energy + Delta-G solvation = -19872.227854 eV Core-core repulsion = 16889.108457 eV Total energy + Delta-G solvation = -2983.119397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.90182 -39.10089 -35.71620 -34.13103 -33.51449 -31.97934 -29.20841 -27.74672 -27.53428 -25.22319 -23.63307 -22.57495 -21.76220 -20.62724 -19.72087 -18.53491 -16.78872 -16.73515 -15.98456 -15.77324 -15.52191 -14.96003 -14.75331 -14.39605 -14.06695 -13.64550 -13.32418 -12.99703 -12.84032 -12.31714 -12.22297 -12.19595 -11.88958 -11.77289 -11.44499 -11.37203 -11.28739 -11.14577 -10.80152 -10.75522 -10.59498 -10.52202 -10.48265 -10.21766 -9.63556 -9.63215 -9.22551 -8.98747 -8.91854 -8.29067 -5.94981 -3.96285 2.99408 3.31334 3.38537 3.41668 3.45607 3.48491 4.18855 4.42993 4.51438 4.52987 4.66190 4.76169 4.81695 5.00436 5.09919 5.22242 5.25211 5.27787 5.38772 5.40374 5.40879 5.49108 5.64194 5.68438 5.69556 5.73072 5.75935 5.77392 5.80612 5.85414 5.94570 6.09121 6.10857 6.31132 6.56195 6.77166 6.97673 7.20356 7.66830 7.74302 7.87307 8.05947 8.49745 8.52823 9.10630 9.67394 11.16497 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.059948 B = 0.002416 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.961850 B =11588.128323 C =11771.412106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.029 4.029 3 C -0.151 4.151 4 C -0.118 4.118 5 C 0.114 3.886 6 N -0.742 5.742 7 C 0.511 3.489 8 O -0.540 6.540 9 C -0.139 4.139 10 C -0.095 4.095 11 C 0.020 3.980 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.141 4.141 21 C -0.186 4.186 22 C -0.180 4.180 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.398 0.602 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 0.354 -28.263 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 C -0.208 4.208 4 C -0.156 4.156 5 C -0.009 4.009 6 N -0.395 5.395 7 C 0.299 3.701 8 O -0.416 6.416 9 C -0.179 4.179 10 C -0.133 4.133 11 C -0.017 4.017 12 C -0.556 4.556 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.159 4.159 21 C -0.222 4.222 22 C -0.217 4.217 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.232 0.768 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.239 0.972 -28.041 28.058 hybrid contribution 0.038 -0.082 0.723 0.729 sum -0.201 0.890 -27.318 27.333 Atomic orbital electron populations 1.21944 0.94082 1.02116 1.02068 1.19963 0.95610 0.94894 0.92446 1.22105 1.01259 0.95322 1.02138 1.21807 1.01295 0.99561 0.92929 1.21461 0.99477 0.96540 0.83446 1.46158 1.54907 1.32606 1.05818 1.21255 0.79630 0.84525 0.84689 1.90670 1.37548 1.26474 1.86886 1.21843 1.02217 1.00773 0.93042 1.21439 1.00343 0.99047 0.92468 1.19131 0.96309 0.95517 0.90717 1.21243 1.31149 1.12233 0.90990 0.92634 1.25025 0.95268 0.95125 0.99142 1.69955 1.37149 1.23184 1.23495 0.86646 0.79242 0.79793 0.82266 1.20238 1.21352 1.20234 1.22331 1.03624 0.98879 0.91107 1.23162 0.92428 1.02646 1.03994 1.22941 0.98208 1.03301 0.97201 0.91958 0.92562 0.92469 0.92118 0.92554 0.91874 0.91100 0.91180 0.91503 0.91542 0.76797 0.89427 0.89423 0.92742 0.92743 0.96622 0.96625 0.93037 0.87913 0.88089 0.89178 0.89092 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 7.96 37.16 0.30 -0.77 16 2 C -0.03 -0.20 0.65 -154.51 -0.10 -0.30 16 3 C -0.15 -1.10 6.72 37.16 0.25 -0.85 16 4 C -0.12 -0.90 4.37 -26.73 -0.12 -1.01 16 5 C 0.11 1.22 4.97 -4.04 -0.02 1.20 16 6 N -0.74 -8.87 5.56 -60.29 -0.33 -9.20 16 7 C 0.51 8.43 7.83 -10.99 -0.09 8.34 16 8 O -0.54 -11.11 15.98 5.55 0.09 -11.03 16 9 C -0.14 -2.35 5.70 -27.88 -0.16 -2.50 16 10 C -0.09 -2.10 4.44 -26.73 -0.12 -2.22 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 16 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C -0.14 -0.92 5.15 -90.62 -0.47 -1.39 16 21 C -0.19 -1.15 9.57 -26.69 -0.26 -1.40 16 22 C -0.18 -1.10 9.38 -26.69 -0.25 -1.35 16 23 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 24 H 0.06 0.38 7.29 -51.93 -0.38 0.00 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.43 6.97 -51.93 -0.36 0.06 16 27 H 0.06 0.38 7.07 -51.93 -0.37 0.01 16 28 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 32 H 0.07 0.78 6.43 -51.93 -0.33 0.44 16 33 H 0.40 3.60 8.47 -40.82 -0.35 3.26 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 41 H 0.10 0.66 8.11 -51.93 -0.42 0.24 16 42 H 0.10 0.62 5.85 -51.93 -0.30 0.32 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 45 H 0.09 0.57 7.07 -51.93 -0.37 0.20 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -33.20 354.05 -8.84 -42.05 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -8.07 Total: -1.92 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.58 Total: -15.84 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.40 Total: -35.81 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.20 -8.84 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594038393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.815 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds