Wall clock time and date at job start Mon Mar 30 2020 07:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46995 * 2 1 4 4 C 1.52996 * 109.47021 * 240.00005 * 2 1 3 5 5 C 1.52998 * 109.47127 * 120.00170 * 2 1 3 6 6 C 1.53004 * 109.47050 * 59.99659 * 5 2 1 7 7 H 1.09003 * 115.54738 * 29.33693 * 6 5 2 8 8 C 1.53001 * 117.49927 * 243.62220 * 6 5 2 9 9 C 1.53001 * 117.49709 * 174.99926 * 6 5 2 10 10 H 1.09007 * 117.49880 * 359.97438 * 9 6 5 11 11 N 1.46497 * 117.49977 * 214.98306 * 9 6 5 12 12 C 1.34774 * 120.00288 * 155.00232 * 11 9 6 13 13 O 1.21280 * 119.99761 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00338 * 179.97438 * 12 11 9 15 15 C 1.53000 * 109.47352 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47355 * 180.02562 * 15 14 12 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.08997 * 109.47168 * 299.99657 * 1 2 3 26 26 H 1.09007 * 109.46754 * 59.99906 * 1 2 3 27 27 H 1.09003 * 109.47026 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46867 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47552 * 300.00086 * 3 2 1 30 30 H 1.08997 * 109.46882 * 60.00168 * 3 2 1 31 31 H 1.09003 * 109.47451 * 300.00022 * 4 2 1 32 32 H 1.09003 * 109.47715 * 60.00219 * 4 2 1 33 33 H 1.08999 * 109.47232 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47238 * 300.00130 * 5 2 1 35 35 H 1.08999 * 109.47088 * 179.97438 * 5 2 1 36 36 H 1.09002 * 117.49630 * 145.02487 * 8 6 5 37 37 H 1.08996 * 117.49878 * 359.97438 * 8 6 5 38 38 H 0.97001 * 120.00220 * 334.99961 * 11 9 6 39 39 H 1.09002 * 109.46875 * 60.00167 * 14 12 11 40 40 H 1.08992 * 109.47547 * 300.00160 * 14 12 11 41 41 H 1.09002 * 109.46807 * 60.00354 * 15 14 12 42 42 H 1.08998 * 109.47285 * 299.99956 * 15 14 12 43 43 H 1.09007 * 109.46922 * 59.99890 * 16 15 14 44 44 H 1.09003 * 109.46836 * 300.00646 * 16 15 14 45 45 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2492 7 1 1.3625 -2.6032 0.2658 8 6 0.5860 -2.5793 2.3793 9 6 2.0284 -3.0893 2.3609 10 1 2.7201 -2.6707 3.0920 11 7 2.2434 -4.4983 2.0224 12 6 3.1163 -5.2371 2.7355 13 8 3.7242 -4.7353 3.6573 14 6 3.3371 -6.6867 2.3877 15 6 4.3691 -7.2891 3.3432 16 6 4.5938 -8.7606 2.9896 17 6 5.6098 -9.3540 3.9312 18 1 6.0509 -8.7429 4.7047 19 6 5.9763 -10.6773 3.8051 20 7 5.4388 -11.4216 2.8635 21 14 7.2362 -11.4126 4.9718 22 1 7.4541 -12.8410 4.6287 23 1 8.5173 -10.6722 4.8475 24 1 6.7382 -11.3096 6.3670 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7217 -1.2490 34 1 1.6767 -0.2075 2.1392 35 1 3.1300 -0.7217 1.2490 36 1 -0.2030 -3.2922 2.1395 37 1 0.3287 -1.8252 3.1230 38 1 1.7575 -4.8996 1.2849 39 1 3.7027 -6.7630 1.3636 40 1 2.3965 -7.2297 2.4790 41 1 4.0040 -7.2128 4.3674 42 1 5.3098 -6.7461 3.2514 43 1 4.9591 -8.8365 1.9654 44 1 3.6532 -9.3039 3.0811 45 1 5.6969 -12.3524 2.7746 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594065661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:35 Heat of formation + Delta-G solvation = -57.865924 kcal Electronic energy + Delta-G solvation = -19804.006403 eV Core-core repulsion = 16820.626563 eV Total energy + Delta-G solvation = -2983.379840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.84678 -38.64653 -36.41032 -34.15168 -32.86965 -31.89351 -28.12960 -27.65177 -27.56701 -27.31120 -24.07269 -22.10263 -21.21665 -20.64302 -19.74985 -18.90136 -16.87174 -16.57545 -16.02444 -15.26933 -14.94256 -14.76705 -14.75007 -14.39528 -13.76487 -13.62799 -13.30317 -13.29179 -12.59679 -12.49481 -12.24082 -12.05932 -11.97761 -11.83590 -11.79643 -11.56593 -11.27761 -11.05879 -10.81193 -10.77475 -10.74200 -10.60675 -10.53390 -10.19685 -9.67602 -9.64895 -9.24751 -9.00791 -8.66744 -8.29962 -5.95903 -3.97238 2.84162 3.17834 3.38001 3.41203 3.45268 3.72572 4.33233 4.45522 4.50804 4.53395 4.70559 4.78974 4.88978 5.07253 5.09683 5.26050 5.30949 5.33232 5.40021 5.47993 5.52078 5.55075 5.58762 5.64686 5.71417 5.71759 5.73328 5.78858 5.85181 5.94190 6.00627 6.07428 6.13206 6.28643 6.55182 6.74838 6.95341 7.18364 7.60524 7.72782 7.85716 8.04828 8.46120 8.49191 9.09625 9.66487 11.15586 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.045278 B = 0.002487 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.257615 B =11253.655735 C =11282.206991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.078 4.078 6 C -0.159 4.159 7 H 0.109 0.891 8 C -0.191 4.191 9 C 0.086 3.914 10 H 0.134 0.866 11 N -0.712 5.712 12 C 0.516 3.484 13 O -0.536 6.536 14 C -0.138 4.138 15 C -0.095 4.095 16 C 0.020 3.980 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.893 3.107 22 H -0.288 1.288 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.400 0.600 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.016 0.984 44 H 0.015 0.985 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 23.275 -8.505 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 C -0.200 4.200 4 C -0.201 4.201 5 C -0.115 4.115 6 C -0.178 4.178 7 H 0.127 0.873 8 C -0.230 4.230 9 C -0.020 4.020 10 H 0.152 0.848 11 N -0.363 5.363 12 C 0.305 3.695 13 O -0.412 6.412 14 C -0.178 4.178 15 C -0.133 4.133 16 C -0.017 4.017 17 C -0.556 4.556 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.721 3.279 22 H -0.213 1.213 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.234 0.766 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.688 23.426 -7.887 27.342 hybrid contribution 0.292 -0.694 0.144 0.767 sum -11.397 22.731 -7.743 26.581 Atomic orbital electron populations 1.21867 0.94503 1.01993 1.01294 1.20517 0.95774 0.95184 0.95250 1.21876 1.01053 0.95409 1.01629 1.21942 1.01121 1.00352 0.96696 1.21238 1.00527 0.92292 0.97491 1.22927 1.03716 0.96116 0.95036 0.87276 1.23602 0.94149 1.03770 1.01447 1.21686 0.97194 0.82204 1.00946 0.84844 1.45569 1.45011 1.09791 1.35902 1.21291 0.77586 0.89300 0.81352 1.90667 1.47517 1.73485 1.29526 1.21850 1.02923 0.90118 1.02905 1.21448 0.96141 0.98568 0.97143 1.19130 0.96822 0.88861 0.96847 1.21239 1.23440 0.95469 1.15500 0.92624 1.25026 0.96601 0.97271 0.95648 1.69955 1.43539 1.07465 1.32816 0.86644 0.81970 0.77930 0.81388 1.21346 1.20226 1.20233 0.92835 0.93111 0.92282 0.92633 0.92729 0.92722 0.92330 0.92899 0.92602 0.91602 0.91359 0.88722 0.88303 0.76613 0.89312 0.89315 0.92686 0.92687 0.96608 0.96618 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.23 37.16 0.31 -0.57 16 2 C -0.07 -0.45 0.80 -154.51 -0.12 -0.57 16 3 C -0.14 -0.89 8.47 37.16 0.31 -0.57 16 4 C -0.14 -0.98 8.23 37.16 0.31 -0.67 16 5 C -0.08 -0.59 4.55 -26.73 -0.12 -0.71 16 6 C -0.16 -1.29 4.18 -90.62 -0.38 -1.67 16 7 H 0.11 0.84 6.06 -51.93 -0.31 0.53 16 8 C -0.19 -1.62 10.10 -26.73 -0.27 -1.89 16 9 C 0.09 0.95 6.15 -67.93 -0.42 0.53 16 10 H 0.13 1.73 7.40 -51.93 -0.38 1.35 16 11 N -0.71 -8.58 5.57 -53.80 -0.30 -8.88 16 12 C 0.52 8.43 7.83 -10.99 -0.09 8.34 16 13 O -0.54 -10.92 15.55 5.56 0.09 -10.83 16 14 C -0.14 -2.30 5.70 -27.88 -0.16 -2.46 16 15 C -0.09 -2.08 4.44 -26.73 -0.12 -2.20 16 16 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 17 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 21 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 27 H 0.06 0.38 7.20 -51.93 -0.37 0.01 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.40 6.14 -51.93 -0.32 0.08 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.78 8.03 -51.93 -0.42 0.37 16 38 H 0.40 3.68 8.83 -40.82 -0.36 3.32 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 43 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -32.75 363.12 -8.78 -41.53 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -8.46 Total: -1.93 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -1.30 Total: -15.99 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.44 Total: -35.43 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.75 -8.78 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594065661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.333 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds