Wall clock time and date at job start Mon Mar 30 2020 07:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46995 * 2 1 4 4 C 1.52996 * 109.47021 * 240.00005 * 2 1 3 5 5 C 1.52998 * 109.47127 * 120.00170 * 2 1 3 6 6 C 1.53004 * 109.47050 * 59.99659 * 5 2 1 7 7 H 1.09003 * 115.54738 * 29.33693 * 6 5 2 8 8 C 1.53001 * 117.49927 * 243.62220 * 6 5 2 9 9 C 1.53001 * 117.49709 * 174.99926 * 6 5 2 10 10 H 1.09007 * 117.49880 * 359.97438 * 9 6 5 11 11 N 1.46497 * 117.49977 * 214.98306 * 9 6 5 12 12 C 1.34774 * 120.00288 * 155.00232 * 11 9 6 13 13 O 1.21280 * 119.99761 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00338 * 179.97438 * 12 11 9 15 15 C 1.53000 * 109.47352 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47355 * 180.02562 * 15 14 12 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.08997 * 109.47168 * 299.99657 * 1 2 3 26 26 H 1.09007 * 109.46754 * 59.99906 * 1 2 3 27 27 H 1.09003 * 109.47026 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46867 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47552 * 300.00086 * 3 2 1 30 30 H 1.08997 * 109.46882 * 60.00168 * 3 2 1 31 31 H 1.09003 * 109.47451 * 300.00022 * 4 2 1 32 32 H 1.09003 * 109.47715 * 60.00219 * 4 2 1 33 33 H 1.08999 * 109.47232 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47238 * 300.00130 * 5 2 1 35 35 H 1.08999 * 109.47088 * 179.97438 * 5 2 1 36 36 H 1.09002 * 117.49630 * 145.02487 * 8 6 5 37 37 H 1.08996 * 117.49878 * 359.97438 * 8 6 5 38 38 H 0.97001 * 120.00220 * 334.99961 * 11 9 6 39 39 H 1.09002 * 109.46875 * 60.00167 * 14 12 11 40 40 H 1.08992 * 109.47547 * 300.00160 * 14 12 11 41 41 H 1.09002 * 109.46807 * 60.00354 * 15 14 12 42 42 H 1.08998 * 109.47285 * 299.99956 * 15 14 12 43 43 H 1.09007 * 109.46922 * 59.99890 * 16 15 14 44 44 H 1.09003 * 109.46836 * 300.00646 * 16 15 14 45 45 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2492 7 1 1.3625 -2.6032 0.2658 8 6 0.5860 -2.5793 2.3793 9 6 2.0284 -3.0893 2.3609 10 1 2.7201 -2.6707 3.0920 11 7 2.2434 -4.4983 2.0224 12 6 3.1163 -5.2371 2.7355 13 8 3.7242 -4.7353 3.6573 14 6 3.3371 -6.6867 2.3877 15 6 4.3691 -7.2891 3.3432 16 6 4.5938 -8.7606 2.9896 17 6 5.6098 -9.3540 3.9312 18 1 6.0509 -8.7429 4.7047 19 6 5.9763 -10.6773 3.8051 20 7 5.4388 -11.4216 2.8635 21 14 7.2362 -11.4126 4.9718 22 1 7.4541 -12.8410 4.6287 23 1 8.5173 -10.6722 4.8475 24 1 6.7382 -11.3096 6.3670 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7217 -1.2490 34 1 1.6767 -0.2075 2.1392 35 1 3.1300 -0.7217 1.2490 36 1 -0.2030 -3.2922 2.1395 37 1 0.3287 -1.8252 3.1230 38 1 1.7575 -4.8996 1.2849 39 1 3.7027 -6.7630 1.3636 40 1 2.3965 -7.2297 2.4790 41 1 4.0040 -7.2128 4.3674 42 1 5.3098 -6.7461 3.2514 43 1 4.9591 -8.8365 1.9654 44 1 3.6532 -9.3039 3.0811 45 1 5.6969 -12.3524 2.7746 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594065661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:35 Heat of formation + Delta-G solvation = -76.811307 kcal Electronic energy + Delta-G solvation = -19804.827937 eV Core-core repulsion = 16820.626563 eV Total energy + Delta-G solvation = -2984.201373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94183 -39.51030 -37.20485 -36.09159 -34.18342 -33.67390 -29.78609 -28.29653 -28.08148 -28.01526 -25.93700 -23.25895 -22.13149 -21.91233 -21.22607 -19.50566 -18.59764 -17.79401 -17.46351 -16.69850 -16.48555 -15.59412 -15.46180 -15.40126 -15.01654 -14.86915 -14.25824 -14.16375 -14.10913 -13.73343 -13.24756 -13.13976 -13.07913 -12.64245 -12.60295 -12.53417 -12.51024 -12.42938 -12.42548 -12.23041 -11.60811 -11.55889 -11.46685 -11.45155 -11.33955 -11.27543 -11.00069 -10.68177 -10.53984 -9.62955 -8.20176 -6.30146 1.39487 1.42526 1.50608 1.59543 2.12283 2.42013 2.94131 3.12602 3.66068 3.79887 3.86920 3.94809 4.07121 4.12784 4.21299 4.25212 4.27503 4.46187 4.69342 4.72055 4.78990 4.82298 4.89214 4.95786 4.97100 4.98498 5.00605 5.03114 5.10698 5.13748 5.17427 5.19502 5.28050 5.34847 5.45881 5.52301 5.55865 5.56886 5.60945 5.75461 5.86866 6.27578 6.55458 6.85017 7.27918 7.38317 8.91138 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.045278 B = 0.002487 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.257615 B =11253.655735 C =11282.206991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.079 4.079 6 C -0.135 4.135 7 H 0.121 0.879 8 C -0.173 4.173 9 C 0.053 3.947 10 H 0.108 0.892 11 N -0.691 5.691 12 C 0.518 3.482 13 O -0.585 6.585 14 C -0.129 4.129 15 C -0.083 4.083 16 C 0.026 3.974 17 C -0.549 4.549 18 H 0.051 0.949 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.962 3.038 22 H -0.278 1.278 23 H -0.269 1.269 24 H -0.269 1.269 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.417 0.583 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.001 0.999 44 H 0.001 0.999 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.181 23.965 -9.148 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.200 4.200 4 C -0.202 4.202 5 C -0.116 4.116 6 C -0.155 4.155 7 H 0.138 0.862 8 C -0.212 4.212 9 C -0.053 4.053 10 H 0.126 0.874 11 N -0.341 5.341 12 C 0.307 3.693 13 O -0.465 6.465 14 C -0.169 4.169 15 C -0.121 4.121 16 C -0.011 4.011 17 C -0.587 4.587 18 H 0.069 0.931 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.786 3.214 22 H -0.203 1.203 23 H -0.194 1.194 24 H -0.194 1.194 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.254 0.746 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.748 24.139 -8.572 28.612 hybrid contribution 0.569 -0.861 0.302 1.076 sum -12.179 23.277 -8.270 27.542 Atomic orbital electron populations 1.21851 0.93869 1.02119 1.01646 1.20497 0.96201 0.95228 0.94548 1.21875 1.00814 0.95235 1.02050 1.21952 1.00691 1.00522 0.97019 1.21258 0.99942 0.92127 0.98300 1.22946 1.02050 0.95575 0.94887 0.86152 1.23667 0.92668 1.03469 1.01360 1.21734 0.98949 0.81747 1.02895 0.87363 1.45296 1.43477 1.10097 1.35260 1.21087 0.77930 0.89206 0.81120 1.90653 1.49771 1.74258 1.31838 1.21677 1.02273 0.90603 1.02349 1.21162 0.97174 0.96008 0.97733 1.19018 0.95323 0.91281 0.95477 1.21668 1.24554 0.96250 1.16219 0.93094 1.25918 0.98628 0.97649 0.97348 1.70060 1.44726 1.07908 1.34206 0.85550 0.79285 0.77333 0.79187 1.20314 1.19435 1.19441 0.92692 0.92621 0.92230 0.93063 0.92137 0.92491 0.92209 0.92276 0.93320 0.91312 0.92403 0.87488 0.87525 0.74621 0.87293 0.87252 0.94150 0.94171 0.98029 0.98027 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.23 71.98 0.59 -0.81 16 2 C -0.06 -0.75 0.80 -52.18 -0.04 -0.79 16 3 C -0.14 -1.57 8.47 71.98 0.61 -0.96 16 4 C -0.14 -1.71 8.23 71.98 0.59 -1.12 16 5 C -0.08 -1.09 4.55 30.59 0.14 -0.95 16 6 C -0.14 -1.95 4.18 -10.79 -0.05 -1.99 16 7 H 0.12 1.51 6.06 -2.39 -0.01 1.50 16 8 C -0.17 -2.55 10.10 30.60 0.31 -2.24 16 9 C 0.05 1.11 6.15 44.99 0.28 1.39 16 10 H 0.11 2.89 7.40 -2.38 -0.02 2.87 16 11 N -0.69 -15.70 5.57 -442.53 -2.46 -18.17 16 12 C 0.52 16.74 7.83 87.66 0.69 17.42 16 13 O -0.59 -24.40 15.55 -3.03 -0.05 -24.44 16 14 C -0.13 -4.22 5.70 29.85 0.17 -4.05 16 15 C -0.08 -3.69 4.44 30.59 0.14 -3.55 16 16 C 0.03 1.40 4.97 29.85 0.15 1.55 16 17 C -0.55 -32.64 9.11 25.60 0.23 -32.40 16 18 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 19 C 0.00 0.15 5.46 84.66 0.46 0.61 16 20 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 21 Si 0.96 45.52 29.54 68.60 2.03 47.54 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.06 0.60 7.20 -2.39 -0.02 0.59 16 28 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.68 6.14 -2.39 -0.01 0.67 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.92 7.87 -2.39 -0.02 0.90 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 1.44 8.03 -2.39 -0.02 1.42 16 38 H 0.42 6.63 8.83 -92.71 -0.82 5.81 16 39 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 42 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 43 H 0.00 0.07 8.14 -2.38 -0.02 0.06 16 44 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -71.38 363.12 4.19 -67.19 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.12 Total: 12.21 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.27 Total: -27.90 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -2.18 Total: -74.60 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -71.38 4.19 -67.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594065661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.621 kcal (2) G-P(sol) polarization free energy of solvation -71.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds