Wall clock time and date at job start Mon Mar 30 2020 07:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46791 * 2 1 4 4 C 1.52998 * 109.46914 * 120.00113 * 2 1 3 5 5 C 1.52992 * 109.47419 * 67.56941 * 4 2 1 6 6 H 1.09002 * 109.87646 * 51.20007 * 5 4 2 7 7 C 1.54324 * 110.01241 * 290.10406 * 5 4 2 8 8 C 1.55160 * 102.93948 * 218.31508 * 7 5 4 9 9 C 1.54688 * 101.67828 * 35.33439 * 8 7 5 10 10 N 1.47020 * 109.88303 * 172.21237 * 5 4 2 11 11 C 1.34779 * 125.65382 * 298.47651 * 10 5 4 12 12 O 1.21285 * 119.99318 * 354.73220 * 11 10 5 13 13 C 1.50698 * 120.00365 * 174.72250 * 11 10 5 14 14 C 1.52991 * 109.47098 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47038 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47033 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00213 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99788 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00284 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99932 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47049 * 89.99782 * 20 18 16 22 22 H 1.48499 * 109.46723 * 209.99663 * 20 18 16 23 23 H 1.48498 * 109.47172 * 329.99721 * 20 18 16 24 24 H 1.08994 * 109.46742 * 288.35609 * 1 2 3 25 25 H 1.08995 * 109.47048 * 48.35582 * 1 2 3 26 26 H 1.09004 * 109.47171 * 168.35991 * 1 2 3 27 27 H 1.09002 * 109.46842 * 239.99978 * 2 1 3 28 28 H 1.09004 * 109.47033 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47076 * 299.99646 * 3 2 1 30 30 H 1.09002 * 109.47445 * 60.00348 * 3 2 1 31 31 H 1.09002 * 109.46951 * 307.56519 * 4 2 1 32 32 H 1.09000 * 109.46875 * 187.56984 * 4 2 1 33 33 H 1.08997 * 110.71959 * 336.67595 * 7 5 4 34 34 H 1.08994 * 110.72276 * 99.77758 * 7 5 4 35 35 H 1.09009 * 111.00112 * 153.57534 * 8 7 5 36 36 H 1.08993 * 111.00481 * 277.42356 * 8 7 5 37 37 H 1.09005 * 110.39282 * 204.35834 * 9 8 7 38 38 H 1.09001 * 110.23619 * 82.11211 * 9 8 7 39 39 H 1.09007 * 109.46824 * 60.00444 * 13 11 10 40 40 H 1.09000 * 109.47065 * 300.00902 * 13 11 10 41 41 H 1.08991 * 109.47604 * 300.00132 * 14 13 11 42 42 H 1.09005 * 109.46721 * 60.00871 * 14 13 11 43 43 H 1.09000 * 109.47450 * 300.00442 * 15 14 13 44 44 H 1.08997 * 109.47044 * 60.00185 * 15 14 13 45 45 H 0.96997 * 120.00564 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6911 -2.2081 1.1579 6 1 2.0240 -2.6087 0.2004 7 6 0.1676 -2.4032 1.3073 8 6 0.0646 -3.7005 2.1522 9 6 1.2877 -3.5618 3.0891 10 7 2.3351 -2.9413 2.2575 11 6 3.6631 -3.0355 2.4674 12 8 4.4390 -2.5677 1.6611 13 6 4.1838 -3.7217 3.7038 14 6 5.7134 -3.6905 3.6985 15 6 6.2421 -4.3879 4.9536 16 6 7.7488 -4.3565 4.9487 17 1 8.2765 -3.8860 4.1323 18 6 8.4536 -4.9278 5.9870 19 7 9.7684 -4.9000 5.9830 20 14 7.5408 -5.7411 7.3994 21 1 7.3225 -7.1763 7.0866 22 1 8.3449 -5.6221 8.6422 23 1 6.2294 -5.0715 7.5922 24 1 -0.3632 0.3236 0.9753 25 1 -0.3633 0.6829 -0.7679 26 1 -0.3634 -1.0066 -0.2074 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.5704 -0.2915 2.1340 32 1 3.1216 -0.6055 1.3195 33 1 -0.2789 -1.5616 1.8369 34 1 -0.3016 -2.5364 0.3325 35 1 -0.8649 -3.7234 2.7211 36 1 0.1574 -4.5852 1.5225 37 1 1.6118 -4.5423 3.4383 38 1 1.0440 -2.9186 3.9346 39 1 3.8412 -4.7565 3.7166 40 1 3.8132 -3.2054 4.5893 41 1 6.0844 -4.2066 2.8131 42 1 6.0556 -2.6556 3.6861 43 1 5.8712 -3.8722 5.8394 44 1 5.8999 -5.4226 4.9657 45 1 10.2643 -5.3022 6.7133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594257549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:28 Heat of formation + Delta-G solvation = -65.404398 kcal Electronic energy + Delta-G solvation = -20811.526714 eV Core-core repulsion = 17827.819981 eV Total energy + Delta-G solvation = -2983.706733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33757 -37.94115 -35.98480 -34.27309 -32.17665 -31.61863 -30.32272 -28.29839 -27.46394 -25.86085 -24.14187 -22.49848 -21.14377 -20.34750 -19.95355 -18.80231 -17.00660 -16.66708 -16.33921 -15.40530 -15.06439 -14.78367 -14.19817 -14.13465 -13.94123 -13.63613 -13.39034 -13.09824 -12.72787 -12.62603 -12.56009 -12.27254 -12.02319 -11.95455 -11.64724 -11.55630 -11.08311 -11.04382 -10.92184 -10.84172 -10.74658 -10.73663 -10.58519 -9.95536 -9.78536 -9.66635 -9.34560 -9.09922 -8.59103 -8.48911 -5.98584 -3.96177 2.89185 3.03611 3.32992 3.39957 3.43160 4.28735 4.33709 4.48989 4.49041 4.71377 4.79247 4.81237 5.04033 5.12492 5.13563 5.29524 5.34669 5.39961 5.40731 5.48105 5.48558 5.52963 5.58085 5.61471 5.63742 5.64015 5.78388 5.82195 5.88086 5.97351 6.08870 6.11650 6.19837 6.22876 6.45510 6.59893 6.73595 6.95429 7.40173 7.48766 7.61516 7.85152 8.42127 8.61834 9.08376 9.63523 11.15189 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028881 B = 0.003632 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.260196 B = 7707.025853 C = 8405.679437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.125 4.125 5 C 0.138 3.862 6 H 0.072 0.928 7 C -0.129 4.129 8 C -0.137 4.137 9 C 0.099 3.901 10 N -0.625 5.625 11 C 0.529 3.471 12 O -0.532 6.532 13 C -0.137 4.137 14 C -0.087 4.087 15 C -0.014 4.014 16 C -0.518 4.518 17 H 0.073 0.927 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.015 0.985 44 H 0.010 0.990 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.539 6.534 -9.156 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.164 4.164 5 C 0.035 3.965 6 H 0.090 0.910 7 C -0.167 4.167 8 C -0.175 4.175 9 C -0.024 4.024 10 N -0.361 5.361 11 C 0.319 3.681 12 O -0.407 6.407 13 C -0.177 4.177 14 C -0.125 4.125 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.190 1.190 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.844 6.726 -9.463 27.423 hybrid contribution -0.382 -0.496 0.882 1.082 sum -25.226 6.230 -8.581 27.364 Atomic orbital electron populations 1.22277 0.95522 1.02301 1.01500 1.21040 0.95623 0.96265 0.98245 1.21828 1.01343 0.95806 1.01413 1.22021 1.02808 0.93883 0.97660 1.21532 0.91897 0.92092 0.90990 0.91027 1.23047 0.94884 0.97995 1.00748 1.22797 0.97851 0.98487 0.98381 1.22249 0.87642 0.98465 0.94017 1.48731 1.05369 1.52788 1.29238 1.20860 0.79725 0.79344 0.88175 1.90686 1.55172 1.48109 1.46754 1.21860 1.00366 1.00765 0.94661 1.21270 0.89197 1.01816 1.00237 1.19602 0.97246 0.95024 0.93251 1.21170 0.89500 1.36951 1.07978 0.90934 1.25054 0.94729 0.95813 0.98063 1.69922 1.05901 1.45785 1.32823 0.86760 0.80246 0.80071 0.82076 1.20350 1.21449 1.19044 0.92724 0.93153 0.91514 0.91194 0.92501 0.92849 0.92838 0.91950 0.90419 0.90101 0.89835 0.89905 0.90669 0.90369 0.91472 0.89616 0.89517 0.92124 0.92101 0.96700 0.97138 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 7.76 37.16 0.29 -0.82 16 2 C -0.09 -0.84 2.90 -90.62 -0.26 -1.10 16 3 C -0.15 -1.30 9.16 37.16 0.34 -0.96 16 4 C -0.13 -1.39 4.39 -26.74 -0.12 -1.51 16 5 C 0.14 1.50 2.84 -66.96 -0.19 1.31 16 6 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 7 C -0.13 -0.93 4.48 -24.89 -0.11 -1.04 16 8 C -0.14 -0.94 7.07 -24.70 -0.17 -1.11 16 9 C 0.10 0.91 6.64 -2.65 -0.02 0.89 16 10 N -0.63 -7.93 3.07 -163.15 -0.50 -8.43 16 11 C 0.53 8.78 7.55 -10.99 -0.08 8.70 16 12 O -0.53 -10.84 15.15 5.55 0.08 -10.76 16 13 C -0.14 -2.25 4.80 -27.89 -0.13 -2.38 16 14 C -0.09 -1.87 4.44 -26.73 -0.12 -1.99 16 15 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 16 C -0.52 -15.36 9.66 -34.44 -0.33 -15.69 16 17 H 0.07 2.34 7.99 -52.49 -0.42 1.92 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.68 13.96 55.43 0.77 -27.90 16 20 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 24 H 0.05 0.37 7.44 -51.93 -0.39 -0.02 16 25 H 0.05 0.33 8.10 -51.93 -0.42 -0.09 16 26 H 0.07 0.41 4.86 -51.93 -0.25 0.15 16 27 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.66 7.87 -51.93 -0.41 0.26 16 32 H 0.08 1.13 6.82 -51.93 -0.35 0.78 16 33 H 0.08 0.53 6.38 -51.93 -0.33 0.20 16 34 H 0.08 0.50 6.49 -51.93 -0.34 0.16 16 35 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.68 7.51 -51.93 -0.39 0.29 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 1.25 7.76 -51.93 -0.40 0.85 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 42 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 43 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 44 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -33.84 345.28 -8.51 -42.35 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -8.28 Total: -3.43 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -1.12 Total: -14.34 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.27 Total: -36.33 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.84 -8.51 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594257549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.055 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds