Wall clock time and date at job start Mon Mar 30 2020 07:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46791 * 2 1 4 4 C 1.52998 * 109.46914 * 120.00113 * 2 1 3 5 5 C 1.52992 * 109.47419 * 67.56941 * 4 2 1 6 6 H 1.09002 * 109.87646 * 51.20007 * 5 4 2 7 7 C 1.54324 * 110.01241 * 290.10406 * 5 4 2 8 8 C 1.55160 * 102.93948 * 218.31508 * 7 5 4 9 9 C 1.54688 * 101.67828 * 35.33439 * 8 7 5 10 10 N 1.47020 * 109.88303 * 172.21237 * 5 4 2 11 11 C 1.34779 * 125.65382 * 298.47651 * 10 5 4 12 12 O 1.21285 * 119.99318 * 354.73220 * 11 10 5 13 13 C 1.50698 * 120.00365 * 174.72250 * 11 10 5 14 14 C 1.52991 * 109.47098 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47038 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47033 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00213 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99788 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00284 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99932 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47049 * 89.99782 * 20 18 16 22 22 H 1.48499 * 109.46723 * 209.99663 * 20 18 16 23 23 H 1.48498 * 109.47172 * 329.99721 * 20 18 16 24 24 H 1.08994 * 109.46742 * 288.35609 * 1 2 3 25 25 H 1.08995 * 109.47048 * 48.35582 * 1 2 3 26 26 H 1.09004 * 109.47171 * 168.35991 * 1 2 3 27 27 H 1.09002 * 109.46842 * 239.99978 * 2 1 3 28 28 H 1.09004 * 109.47033 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47076 * 299.99646 * 3 2 1 30 30 H 1.09002 * 109.47445 * 60.00348 * 3 2 1 31 31 H 1.09002 * 109.46951 * 307.56519 * 4 2 1 32 32 H 1.09000 * 109.46875 * 187.56984 * 4 2 1 33 33 H 1.08997 * 110.71959 * 336.67595 * 7 5 4 34 34 H 1.08994 * 110.72276 * 99.77758 * 7 5 4 35 35 H 1.09009 * 111.00112 * 153.57534 * 8 7 5 36 36 H 1.08993 * 111.00481 * 277.42356 * 8 7 5 37 37 H 1.09005 * 110.39282 * 204.35834 * 9 8 7 38 38 H 1.09001 * 110.23619 * 82.11211 * 9 8 7 39 39 H 1.09007 * 109.46824 * 60.00444 * 13 11 10 40 40 H 1.09000 * 109.47065 * 300.00902 * 13 11 10 41 41 H 1.08991 * 109.47604 * 300.00132 * 14 13 11 42 42 H 1.09005 * 109.46721 * 60.00871 * 14 13 11 43 43 H 1.09000 * 109.47450 * 300.00442 * 15 14 13 44 44 H 1.08997 * 109.47044 * 60.00185 * 15 14 13 45 45 H 0.96997 * 120.00564 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6911 -2.2081 1.1579 6 1 2.0240 -2.6087 0.2004 7 6 0.1676 -2.4032 1.3073 8 6 0.0646 -3.7005 2.1522 9 6 1.2877 -3.5618 3.0891 10 7 2.3351 -2.9413 2.2575 11 6 3.6631 -3.0355 2.4674 12 8 4.4390 -2.5677 1.6611 13 6 4.1838 -3.7217 3.7038 14 6 5.7134 -3.6905 3.6985 15 6 6.2421 -4.3879 4.9536 16 6 7.7488 -4.3565 4.9487 17 1 8.2765 -3.8860 4.1323 18 6 8.4536 -4.9278 5.9870 19 7 9.7684 -4.9000 5.9830 20 14 7.5408 -5.7411 7.3994 21 1 7.3225 -7.1763 7.0866 22 1 8.3449 -5.6221 8.6422 23 1 6.2294 -5.0715 7.5922 24 1 -0.3632 0.3236 0.9753 25 1 -0.3633 0.6829 -0.7679 26 1 -0.3634 -1.0066 -0.2074 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.5704 -0.2915 2.1340 32 1 3.1216 -0.6055 1.3195 33 1 -0.2789 -1.5616 1.8369 34 1 -0.3016 -2.5364 0.3325 35 1 -0.8649 -3.7234 2.7211 36 1 0.1574 -4.5852 1.5225 37 1 1.6118 -4.5423 3.4383 38 1 1.0440 -2.9186 3.9346 39 1 3.8412 -4.7565 3.7166 40 1 3.8132 -3.2054 4.5893 41 1 6.0844 -4.2066 2.8131 42 1 6.0556 -2.6556 3.6861 43 1 5.8712 -3.8722 5.8394 44 1 5.8999 -5.4226 4.9657 45 1 10.2643 -5.3022 6.7133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594257549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:27 Heat of formation + Delta-G solvation = -86.166683 kcal Electronic energy + Delta-G solvation = -20812.427034 eV Core-core repulsion = 17827.819981 eV Total energy + Delta-G solvation = -2984.607053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35643 -39.04355 -36.77834 -36.15574 -34.16555 -32.65555 -31.19271 -29.94748 -28.17573 -26.61667 -25.84194 -23.61550 -22.21296 -21.48584 -21.09333 -19.92219 -18.85253 -18.08764 -17.33051 -16.63981 -16.23627 -15.97749 -15.84747 -14.94666 -14.88068 -14.80061 -14.74133 -14.24233 -13.99618 -13.79558 -13.50351 -13.40049 -13.26249 -12.91230 -12.78497 -12.64328 -12.50743 -12.32474 -11.81457 -11.78754 -11.77792 -11.70458 -11.57175 -11.49933 -11.38348 -11.34600 -11.27259 -10.76140 -10.71261 -9.61784 -8.28748 -6.34785 1.37600 1.41556 1.53767 1.63178 2.01844 2.38492 3.06098 3.49420 3.68867 3.76442 3.92060 4.01973 4.07019 4.12107 4.16288 4.24531 4.38402 4.47647 4.56011 4.65811 4.74593 4.76194 4.80795 4.85249 4.87089 4.91892 4.93269 4.96574 5.01117 5.05802 5.11211 5.15730 5.21084 5.28869 5.40579 5.45814 5.50224 5.52676 5.56304 5.57587 5.66532 6.29175 6.53618 6.73655 7.20116 7.29630 8.89092 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028881 B = 0.003632 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.260196 B = 7707.025853 C = 8405.679437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.119 4.119 5 C 0.130 3.870 6 H 0.051 0.949 7 C -0.119 4.119 8 C -0.128 4.128 9 C 0.086 3.914 10 N -0.620 5.620 11 C 0.522 3.478 12 O -0.587 6.587 13 C -0.125 4.125 14 C -0.079 4.079 15 C -0.007 4.007 16 C -0.542 4.542 17 H 0.018 0.982 18 C -0.003 4.003 19 N -0.957 5.957 20 Si 0.963 3.037 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.236 1.236 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.030 0.970 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.369 5.554 -7.524 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.158 4.158 5 C 0.027 3.973 6 H 0.070 0.930 7 C -0.156 4.156 8 C -0.166 4.166 9 C -0.035 4.035 10 N -0.354 5.354 11 C 0.312 3.688 12 O -0.467 6.467 13 C -0.164 4.164 14 C -0.118 4.118 15 C -0.044 4.044 16 C -0.579 4.579 17 H 0.036 0.964 18 C -0.199 4.199 19 N -0.598 5.598 20 Si 0.785 3.215 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.159 1.159 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -29.743 5.749 -7.841 31.292 hybrid contribution 1.210 -0.128 0.277 1.248 sum -28.533 5.621 -7.564 30.049 Atomic orbital electron populations 1.22231 0.93022 1.03396 1.02310 1.21028 0.97636 0.95728 0.96648 1.21837 1.00068 0.96143 1.02374 1.21942 0.99989 0.94763 0.99084 1.21732 0.94609 0.91329 0.89609 0.93045 1.23052 0.91394 0.98974 1.02222 1.22819 0.97870 0.97967 0.97920 1.22642 0.87360 0.98938 0.94571 1.48764 1.04772 1.51948 1.29898 1.20871 0.80972 0.79127 0.87801 1.90669 1.57007 1.50589 1.48472 1.21687 0.96132 1.02887 0.95701 1.21036 0.93297 0.99434 0.97991 1.19527 0.93472 0.96512 0.94915 1.21546 0.92659 1.36904 1.06833 0.96376 1.26216 0.95668 0.96368 1.01671 1.70106 1.08274 1.47105 1.34307 0.85478 0.79681 0.79344 0.77017 1.18772 1.21078 1.15892 0.91911 0.92336 0.90280 0.92282 0.94595 0.91417 0.92287 0.91207 0.94938 0.88672 0.88028 0.86938 0.90682 0.89494 0.89865 0.86841 0.87021 0.94646 0.94747 0.95151 0.95200 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 7.76 71.98 0.56 -1.15 16 2 C -0.09 -1.61 2.90 -10.79 -0.03 -1.64 16 3 C -0.15 -2.61 9.16 71.98 0.66 -1.96 16 4 C -0.12 -2.67 4.39 30.59 0.13 -2.54 16 5 C 0.13 2.71 2.84 45.34 0.13 2.84 16 6 H 0.05 1.27 8.09 -2.39 -0.02 1.25 16 7 C -0.12 -1.29 4.48 31.78 0.14 -1.15 16 8 C -0.13 -1.18 7.07 31.91 0.23 -0.96 16 9 C 0.09 1.26 6.64 86.78 0.58 1.83 16 10 N -0.62 -14.95 3.07 -788.48 -2.42 -17.37 16 11 C 0.52 17.48 7.55 87.66 0.66 18.14 16 12 O -0.59 -25.55 15.15 -3.05 -0.05 -25.60 16 13 C -0.12 -3.92 4.80 29.84 0.14 -3.78 16 14 C -0.08 -3.49 4.44 30.59 0.14 -3.36 16 15 C -0.01 -0.33 4.04 29.85 0.12 -0.21 16 16 C -0.54 -33.30 9.66 25.60 0.25 -33.06 16 17 H 0.02 1.25 7.99 -2.91 -0.02 1.23 16 18 C 0.00 -0.20 5.47 84.66 0.46 0.26 16 19 N -0.96 -62.64 13.96 21.45 0.30 -62.34 16 20 Si 0.96 44.44 27.47 68.60 1.88 46.32 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 24 H 0.06 0.62 7.44 -2.39 -0.02 0.61 16 25 H 0.06 0.59 8.10 -2.39 -0.02 0.57 16 26 H 0.08 0.69 4.86 -2.38 -0.01 0.67 16 27 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 28 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.42 7.87 -2.39 -0.02 1.40 16 32 H 0.03 1.02 6.82 -2.39 -0.02 1.00 16 33 H 0.09 0.82 6.38 -2.39 -0.02 0.81 16 34 H 0.10 0.79 6.49 -2.39 -0.02 0.78 16 35 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 1.15 7.51 -2.38 -0.02 1.13 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 2.95 7.76 -2.38 -0.02 2.94 16 40 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.03 1.69 8.10 -2.39 -0.02 1.67 16 42 H 0.03 1.65 8.10 -2.38 -0.02 1.63 16 43 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 44 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 45 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -79.91 345.28 4.76 -75.16 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.87 Total: 10.55 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 4.17 Total: -26.72 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.12 Total: -79.71 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -79.91 4.76 -75.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594257549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.009 kcal (2) G-P(sol) polarization free energy of solvation -79.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds