Wall clock time and date at job start Mon Mar 30 2020 06:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52998 * 109.45909 * 60.02746 * 3 2 1 5 5 C 1.53038 * 109.45882 * 300.06205 * 3 2 1 6 6 C 1.53194 * 109.30957 * 178.61181 * 5 3 2 7 7 N 1.46927 * 108.77078 * 54.64080 * 6 5 3 8 8 C 1.34778 * 120.62863 * 126.41073 * 7 6 5 9 9 O 1.21280 * 119.99925 * 179.97438 * 8 7 6 10 10 C 1.50702 * 120.00248 * 359.97327 * 8 7 6 11 11 C 1.53003 * 109.47060 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46553 * 180.02562 * 11 10 8 13 13 C 1.50710 * 109.46824 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99806 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00096 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99756 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47112 * 90.00515 * 17 15 13 19 19 H 1.48502 * 109.46675 * 209.99874 * 17 15 13 20 20 H 1.48491 * 109.47190 * 329.99814 * 17 15 13 21 21 C 1.46924 * 118.74171 * 306.38626 * 7 6 5 22 22 C 1.53042 * 109.45624 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 25 25 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 26 26 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 28 28 H 1.08998 * 109.47686 * 59.99716 * 4 3 2 29 29 H 1.09002 * 109.46962 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47329 * 299.99259 * 4 3 2 31 31 H 1.08994 * 109.50288 * 298.57011 * 5 3 2 32 32 H 1.09004 * 109.49418 * 58.67303 * 5 3 2 33 33 H 1.08997 * 109.59334 * 294.85240 * 6 5 3 34 34 H 1.09005 * 109.58558 * 174.42080 * 6 5 3 35 35 H 1.08998 * 109.47149 * 300.00116 * 10 8 7 36 36 H 1.09000 * 109.46590 * 60.00439 * 10 8 7 37 37 H 1.08998 * 109.47400 * 300.00165 * 11 10 8 38 38 H 1.09000 * 109.46895 * 60.00829 * 11 10 8 39 39 H 1.08998 * 109.47289 * 300.00094 * 12 11 10 40 40 H 1.08996 * 109.47449 * 60.00718 * 12 11 10 41 41 H 0.97001 * 120.00196 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.58495 * 293.82181 * 21 7 6 43 43 H 1.08999 * 109.58824 * 173.39649 * 21 7 6 44 44 H 1.09001 * 109.50000 * 301.33679 * 22 3 2 45 45 H 1.09000 * 109.49903 * 61.43785 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5302 2.1633 1.2497 5 6 1.5283 2.1642 -1.2489 6 6 2.0119 3.6176 -1.2280 7 7 3.4738 3.6274 -1.0818 8 6 4.2468 4.3026 -1.9554 9 8 5.4524 4.3033 -1.8237 10 6 3.6130 5.0567 -3.0959 11 6 4.7040 5.7301 -3.9308 12 6 4.0604 6.4962 -5.0883 13 6 5.1351 7.1591 -5.9112 14 1 6.1732 7.0456 -5.6357 15 6 4.7929 7.9111 -7.0149 16 7 5.7308 8.4892 -7.7332 17 14 2.9972 8.1079 -7.4908 18 1 2.4331 9.3019 -6.8116 19 1 2.8911 8.2791 -8.9621 20 1 2.2402 6.8992 -7.0773 21 6 4.0772 2.8876 0.0350 22 6 3.5703 1.4423 0.0006 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8939 1.6493 2.1394 29 1 1.8938 3.1909 1.2501 30 1 0.4402 2.1633 1.2501 31 1 1.9112 1.6660 -2.1395 32 1 0.4385 2.1436 -1.2600 33 1 1.5571 4.1421 -0.3877 34 1 1.7347 4.1084 -2.1610 35 1 3.0515 4.3635 -3.7223 36 1 2.9389 5.8159 -2.6993 37 1 5.2652 6.4234 -3.3043 38 1 5.3784 4.9712 -4.3274 39 1 3.4989 5.8033 -5.7150 40 1 3.3862 7.2551 -4.6915 41 1 5.4901 9.0180 -8.5099 42 1 3.7908 3.3525 0.9784 43 1 5.1625 2.8966 -0.0646 44 1 3.9337 0.9080 0.8785 45 1 3.9344 0.9509 -0.9016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594260606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:59 Heat of formation + Delta-G solvation = -68.826628 kcal Electronic energy + Delta-G solvation = -20975.555785 eV Core-core repulsion = 17991.700654 eV Total energy + Delta-G solvation = -2983.855132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56202 -38.55453 -35.04043 -34.33044 -32.27591 -31.50508 -30.69514 -28.54494 -27.75589 -25.60375 -23.81888 -23.47580 -21.92585 -20.26174 -19.46959 -18.07951 -16.90014 -16.63479 -15.74240 -15.66894 -15.26818 -15.07962 -14.50340 -14.38745 -14.17014 -13.71646 -13.36296 -12.97584 -12.81042 -12.59130 -12.36680 -12.30642 -12.08622 -11.91490 -11.85100 -11.59283 -11.40216 -11.20404 -10.94211 -10.78654 -10.75985 -10.55801 -10.44003 -9.95533 -9.77481 -9.66285 -9.35178 -9.10281 -8.58417 -8.49003 -5.98664 -3.96279 2.88272 3.05778 3.32890 3.39851 3.42881 4.31660 4.39879 4.40786 4.48867 4.75221 4.84656 4.95831 4.99766 5.09499 5.11988 5.22675 5.24604 5.33421 5.34640 5.43921 5.48570 5.54593 5.60624 5.63016 5.65848 5.67101 5.73762 5.79671 5.83330 5.86225 5.93189 6.06188 6.13293 6.22110 6.54197 6.59609 6.73576 6.95422 7.39559 7.48507 7.49751 7.84978 8.41181 8.61764 9.08309 9.63448 11.15126 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031144 B = 0.003602 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.823975 B = 7772.384149 C = 8352.329073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.061 4.061 4 C -0.148 4.148 5 C -0.127 4.127 6 C 0.105 3.895 7 N -0.619 5.619 8 C 0.515 3.485 9 O -0.537 6.537 10 C -0.140 4.140 11 C -0.087 4.087 12 C -0.014 4.014 13 C -0.518 4.518 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.110 3.890 22 C -0.123 4.123 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.010 0.990 41 H 0.262 0.738 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.595 -16.717 18.851 28.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.061 4.061 4 C -0.205 4.205 5 C -0.165 4.165 6 C -0.018 4.018 7 N -0.355 5.355 8 C 0.305 3.695 9 O -0.413 6.413 10 C -0.180 4.180 11 C -0.125 4.125 12 C -0.051 4.051 13 C -0.556 4.556 14 H 0.091 0.909 15 C -0.137 4.137 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.013 4.013 22 C -0.161 4.161 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.900 -16.592 18.754 28.167 hybrid contribution -1.020 0.123 -0.331 1.079 sum -13.920 -16.469 18.423 28.362 Atomic orbital electron populations 1.21893 0.95906 1.01448 1.02108 1.21560 0.95948 0.95610 1.01900 1.20540 0.94942 0.95221 0.95400 1.22036 1.01116 1.00613 0.96757 1.22055 1.01003 0.95430 0.98026 1.21783 0.80081 0.97091 1.02858 1.48194 1.06808 1.51634 1.28843 1.21165 0.87148 0.78401 0.82827 1.90675 1.14628 1.61878 1.74071 1.21886 1.01172 0.99690 0.95242 1.21272 0.95744 0.99033 0.96483 1.19605 0.96772 0.95090 0.93674 1.21175 0.94478 1.29934 1.10017 0.90939 1.25055 0.97246 0.95227 0.96140 1.69926 1.32599 1.33850 1.18068 0.86759 0.86029 0.78883 0.77471 1.20345 1.21452 1.19051 1.21542 0.99745 0.90985 0.89012 1.21974 0.94831 0.96774 1.02557 0.93055 0.92437 0.92338 0.92032 0.92062 0.92735 0.92149 0.92285 0.91319 0.90409 0.91320 0.89271 0.89488 0.89498 0.92132 0.92125 0.96705 0.97126 0.92808 0.91762 0.89151 0.90980 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.21 37.16 0.34 -0.58 16 2 C -0.11 -0.74 4.99 -26.73 -0.13 -0.87 16 3 C -0.06 -0.44 0.54 -154.46 -0.08 -0.53 16 4 C -0.15 -0.98 7.36 37.16 0.27 -0.70 16 5 C -0.13 -1.00 4.59 -26.61 -0.12 -1.12 16 6 C 0.10 0.97 5.87 -3.71 -0.02 0.95 16 7 N -0.62 -7.64 2.97 -172.77 -0.51 -8.15 16 8 C 0.51 8.41 7.70 -10.98 -0.08 8.33 16 9 O -0.54 -10.92 15.39 5.56 0.09 -10.84 16 10 C -0.14 -2.26 4.05 -27.88 -0.11 -2.37 16 11 C -0.09 -1.86 4.44 -26.73 -0.12 -1.98 16 12 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 13 C -0.52 -15.32 9.66 -34.44 -0.33 -15.65 16 14 H 0.07 2.33 7.99 -52.48 -0.42 1.91 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.64 13.96 55.43 0.77 -27.87 16 17 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 21 C 0.11 1.19 5.96 -3.71 -0.02 1.17 16 22 C -0.12 -1.07 4.91 -26.61 -0.13 -1.20 16 23 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.06 0.32 6.43 -51.93 -0.33 -0.02 16 25 H 0.06 0.34 6.40 -51.93 -0.33 0.01 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.44 4.98 -51.93 -0.26 0.18 16 30 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.51 6.36 -51.93 -0.33 0.18 16 33 H 0.07 0.55 6.69 -51.93 -0.35 0.21 16 34 H 0.09 0.81 5.93 -51.93 -0.31 0.50 16 35 H 0.09 1.25 7.69 -51.93 -0.40 0.85 16 36 H 0.09 1.24 7.94 -51.93 -0.41 0.83 16 37 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 38 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 39 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 40 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.06 0.62 6.69 -51.93 -0.35 0.27 16 43 H 0.09 1.17 7.01 -51.93 -0.36 0.81 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -33.60 336.15 -7.94 -41.54 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -7.92 Total: -3.79 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -0.76 Total: -13.19 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.26 Total: -36.02 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.60 -7.94 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594260606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.291 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds