Wall clock time and date at job start Mon Mar 30 2020 06:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46662 * 2 1 4 4 C 1.53001 * 109.47072 * 119.99515 * 2 1 3 5 5 C 1.53043 * 109.44748 * 59.97226 * 4 2 1 6 6 C 1.53191 * 109.31132 * 181.37889 * 5 4 2 7 7 N 1.46921 * 108.77411 * 305.35957 * 6 5 4 8 8 C 1.34777 * 120.63225 * 233.58641 * 7 6 5 9 9 O 1.21282 * 119.99945 * 180.02562 * 8 7 6 10 10 C 1.50700 * 119.99997 * 0.02846 * 8 7 6 11 11 C 1.52995 * 109.46979 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.47048 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.46982 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00103 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99609 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00264 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99727 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47473 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47230 * 120.00065 * 17 15 13 20 20 H 1.48500 * 109.47132 * 240.00264 * 17 15 13 21 21 C 1.46925 * 118.73795 * 53.61317 * 7 6 5 22 22 C 1.53046 * 109.46008 * 180.02562 * 4 2 1 23 23 H 1.08992 * 109.47337 * 299.99946 * 1 2 3 24 24 H 1.09003 * 109.46920 * 60.00572 * 1 2 3 25 25 H 1.09008 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47337 * 240.00054 * 2 1 3 27 27 H 1.09002 * 109.47199 * 59.99962 * 3 2 1 28 28 H 1.09005 * 109.47243 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47231 * 299.99847 * 3 2 1 30 30 H 1.09002 * 109.46300 * 300.00395 * 4 2 1 31 31 H 1.09004 * 109.49679 * 301.32867 * 5 4 2 32 32 H 1.08994 * 109.49744 * 61.42383 * 5 4 2 33 33 H 1.09002 * 109.58035 * 185.57574 * 6 5 4 34 34 H 1.09002 * 109.58818 * 65.15445 * 6 5 4 35 35 H 1.08997 * 109.46971 * 299.99626 * 10 8 7 36 36 H 1.08999 * 109.47199 * 59.99382 * 10 8 7 37 37 H 1.08997 * 109.47190 * 299.99769 * 11 10 8 38 38 H 1.08999 * 109.47434 * 59.99802 * 11 10 8 39 39 H 1.08997 * 109.47069 * 300.00005 * 12 11 10 40 40 H 1.08992 * 109.46871 * 60.00036 * 12 11 10 41 41 H 0.97001 * 119.99882 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.59222 * 186.59958 * 21 7 6 43 43 H 1.09006 * 109.70276 * 66.24587 * 21 7 6 44 44 H 1.08996 * 109.49923 * 298.58843 * 22 4 2 45 45 H 1.09001 * 109.49381 * 58.67936 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5290 -2.1637 1.2492 6 6 2.0127 -2.8726 2.5182 7 7 3.4745 -2.7504 2.6000 8 6 4.2479 -3.8442 2.7478 9 8 5.4535 -3.7300 2.8145 10 6 3.6147 -5.2093 2.8300 11 6 4.7062 -6.2687 2.9943 12 6 4.0632 -7.6546 3.0784 13 6 5.1384 -8.6982 3.2397 14 1 6.1764 -8.4025 3.2788 15 6 4.7967 -10.0303 3.3384 16 7 3.5326 -10.3902 3.2924 17 14 6.1293 -11.3238 3.5391 18 1 7.4596 -10.6644 3.5639 19 1 5.9180 -12.0590 4.8119 20 1 6.0698 -12.2765 2.4014 21 6 4.0773 -1.4130 2.5183 22 6 3.5704 -0.7204 1.2494 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.6765 1.9564 0.8900 28 1 3.1299 1.4427 0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6765 -0.2072 2.1392 31 1 0.4392 -2.1637 1.2255 32 1 1.9123 -2.6854 0.3724 33 1 1.7359 -3.9261 2.4762 34 1 1.5575 -2.4076 3.3926 35 1 2.9404 -5.2460 3.6856 36 1 3.0534 -5.4050 1.9164 37 1 5.3801 -6.2318 2.1385 38 1 5.2678 -6.0731 3.9078 39 1 3.3895 -7.6912 3.9345 40 1 3.5014 -7.8504 2.1653 41 1 3.2924 -11.3274 3.3615 42 1 5.1628 -1.5032 2.4766 43 1 3.7927 -0.8276 3.3927 44 1 3.9346 -1.2557 0.3725 45 1 3.9337 0.3070 1.2258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594305804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:18 Heat of formation + Delta-G solvation = -78.551237 kcal Electronic energy + Delta-G solvation = -20634.033523 eV Core-core repulsion = 17649.756700 eV Total energy + Delta-G solvation = -2984.276822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21834 -38.29199 -35.44353 -34.20983 -32.26196 -31.34354 -31.20881 -27.98461 -27.41565 -25.41772 -23.85011 -22.92562 -21.50770 -20.31844 -19.93009 -18.75948 -16.93210 -16.23393 -15.65945 -15.54847 -14.96068 -14.73795 -14.41726 -14.34293 -14.30680 -13.62151 -13.41135 -13.07008 -12.62148 -12.54014 -12.35891 -12.23690 -12.08243 -11.78922 -11.66108 -11.36761 -11.30841 -11.20515 -10.80384 -10.76643 -10.60992 -10.49216 -10.45370 -10.35643 -9.64208 -9.57550 -9.21824 -8.97118 -8.56381 -8.30250 -5.95788 -3.96859 2.95048 3.12269 3.35094 3.42276 3.48367 4.37007 4.42392 4.48706 4.51526 4.74400 4.87696 5.00410 5.05293 5.15270 5.19402 5.24795 5.31642 5.34411 5.40404 5.53194 5.54072 5.60992 5.64226 5.65960 5.72034 5.74945 5.75762 5.83566 5.86120 5.93695 5.99012 6.06860 6.24082 6.29751 6.61250 6.76481 6.97379 7.19623 7.54385 7.73959 7.86709 8.05354 8.47469 8.49933 9.10539 9.67041 11.15815 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039136 B = 0.003110 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.290981 B = 8999.780650 C = 9442.433605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.081 4.081 5 C -0.133 4.133 6 C 0.106 3.894 7 N -0.621 5.621 8 C 0.515 3.485 9 O -0.540 6.540 10 C -0.137 4.137 11 C -0.095 4.095 12 C 0.020 3.980 13 C -0.516 4.516 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.110 3.890 22 C -0.130 4.130 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 23.516 -5.302 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.100 4.100 5 C -0.171 4.171 6 C -0.017 4.017 7 N -0.356 5.356 8 C 0.305 3.695 9 O -0.416 6.416 10 C -0.177 4.177 11 C -0.133 4.133 12 C -0.017 4.017 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.013 4.013 22 C -0.168 4.168 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.675 23.414 -5.250 25.193 hybrid contribution 0.464 -0.721 0.076 0.861 sum -7.211 22.693 -5.174 24.367 Atomic orbital electron populations 1.21901 0.95271 1.01960 1.01548 1.21141 0.95706 0.96077 0.98167 1.21900 1.01250 0.95975 1.01541 1.21192 0.95147 0.95546 0.98116 1.22061 1.01035 0.95587 0.98449 1.21743 0.79960 1.02243 0.97718 1.48224 1.06901 1.06501 1.73986 1.21266 0.87128 0.86491 0.74625 1.90656 1.14722 1.86676 1.49558 1.21857 1.01208 0.91231 1.03381 1.21452 0.95787 0.94560 1.01501 1.19133 0.96008 0.89478 0.97045 1.21320 0.93499 0.91451 1.49190 0.92533 1.25021 0.95346 0.98717 0.95473 1.69972 1.15995 1.16629 1.51193 0.86543 0.82301 0.81633 0.77601 1.19686 1.21049 1.21047 1.21505 0.99831 0.82872 0.97049 1.22035 0.95489 1.00788 0.98533 0.92762 0.92942 0.92226 0.91254 0.92778 0.92358 0.92931 0.91091 0.90401 0.91314 0.89039 0.91605 0.89475 0.89478 0.92760 0.92744 0.96622 0.96641 0.93148 0.89170 0.92091 0.91536 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.84 37.16 0.33 -0.61 16 2 C -0.09 -0.64 2.51 -90.62 -0.23 -0.87 16 3 C -0.15 -0.94 8.84 37.16 0.33 -0.61 16 4 C -0.08 -0.63 1.74 -90.57 -0.16 -0.79 16 5 C -0.13 -1.11 5.04 -26.61 -0.13 -1.24 16 6 C 0.11 1.05 6.34 -3.71 -0.02 1.03 16 7 N -0.62 -8.09 2.97 -172.77 -0.51 -8.60 16 8 C 0.51 8.80 7.70 -10.98 -0.08 8.71 16 9 O -0.54 -11.27 15.40 5.56 0.09 -11.19 16 10 C -0.14 -2.37 4.05 -27.89 -0.11 -2.48 16 11 C -0.09 -2.11 4.44 -26.73 -0.12 -2.23 16 12 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 17 Si 0.89 22.23 29.54 -169.99 -5.02 17.20 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 C 0.11 1.25 6.43 -3.71 -0.02 1.22 16 22 C -0.13 -1.17 5.04 -26.61 -0.13 -1.30 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.37 6.40 -51.92 -0.33 0.04 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.37 6.40 -51.93 -0.33 0.04 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.54 6.36 -51.93 -0.33 0.21 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.91 5.93 -51.93 -0.31 0.60 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.37 7.94 -51.93 -0.41 0.96 16 36 H 0.09 1.37 7.69 -51.93 -0.40 0.97 16 37 H 0.05 1.26 8.10 -51.93 -0.42 0.83 16 38 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.09 1.20 7.01 -51.93 -0.36 0.84 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.56 6.36 -51.93 -0.33 0.23 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -32.94 347.07 -8.66 -41.60 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -8.26 Total: -4.98 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -0.91 Total: -12.70 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.22 Total: -35.17 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.94 -8.66 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594305804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.953 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds