Wall clock time and date at job start Mon Mar 30 2020 06:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46662 * 2 1 4 4 C 1.53001 * 109.47072 * 119.99515 * 2 1 3 5 5 C 1.53043 * 109.44748 * 59.97226 * 4 2 1 6 6 C 1.53191 * 109.31132 * 181.37889 * 5 4 2 7 7 N 1.46921 * 108.77411 * 305.35957 * 6 5 4 8 8 C 1.34777 * 120.63225 * 233.58641 * 7 6 5 9 9 O 1.21282 * 119.99945 * 180.02562 * 8 7 6 10 10 C 1.50700 * 119.99997 * 0.02846 * 8 7 6 11 11 C 1.52995 * 109.46979 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.47048 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.46982 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00103 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99609 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00264 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99727 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47473 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47230 * 120.00065 * 17 15 13 20 20 H 1.48500 * 109.47132 * 240.00264 * 17 15 13 21 21 C 1.46925 * 118.73795 * 53.61317 * 7 6 5 22 22 C 1.53046 * 109.46008 * 180.02562 * 4 2 1 23 23 H 1.08992 * 109.47337 * 299.99946 * 1 2 3 24 24 H 1.09003 * 109.46920 * 60.00572 * 1 2 3 25 25 H 1.09008 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47337 * 240.00054 * 2 1 3 27 27 H 1.09002 * 109.47199 * 59.99962 * 3 2 1 28 28 H 1.09005 * 109.47243 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47231 * 299.99847 * 3 2 1 30 30 H 1.09002 * 109.46300 * 300.00395 * 4 2 1 31 31 H 1.09004 * 109.49679 * 301.32867 * 5 4 2 32 32 H 1.08994 * 109.49744 * 61.42383 * 5 4 2 33 33 H 1.09002 * 109.58035 * 185.57574 * 6 5 4 34 34 H 1.09002 * 109.58818 * 65.15445 * 6 5 4 35 35 H 1.08997 * 109.46971 * 299.99626 * 10 8 7 36 36 H 1.08999 * 109.47199 * 59.99382 * 10 8 7 37 37 H 1.08997 * 109.47190 * 299.99769 * 11 10 8 38 38 H 1.08999 * 109.47434 * 59.99802 * 11 10 8 39 39 H 1.08997 * 109.47069 * 300.00005 * 12 11 10 40 40 H 1.08992 * 109.46871 * 60.00036 * 12 11 10 41 41 H 0.97001 * 119.99882 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.59222 * 186.59958 * 21 7 6 43 43 H 1.09006 * 109.70276 * 66.24587 * 21 7 6 44 44 H 1.08996 * 109.49923 * 298.58843 * 22 4 2 45 45 H 1.09001 * 109.49381 * 58.67936 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5290 -2.1637 1.2492 6 6 2.0127 -2.8726 2.5182 7 7 3.4745 -2.7504 2.6000 8 6 4.2479 -3.8442 2.7478 9 8 5.4535 -3.7300 2.8145 10 6 3.6147 -5.2093 2.8300 11 6 4.7062 -6.2687 2.9943 12 6 4.0632 -7.6546 3.0784 13 6 5.1384 -8.6982 3.2397 14 1 6.1764 -8.4025 3.2788 15 6 4.7967 -10.0303 3.3384 16 7 3.5326 -10.3902 3.2924 17 14 6.1293 -11.3238 3.5391 18 1 7.4596 -10.6644 3.5639 19 1 5.9180 -12.0590 4.8119 20 1 6.0698 -12.2765 2.4014 21 6 4.0773 -1.4130 2.5183 22 6 3.5704 -0.7204 1.2494 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.6765 1.9564 0.8900 28 1 3.1299 1.4427 0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6765 -0.2072 2.1392 31 1 0.4392 -2.1637 1.2255 32 1 1.9123 -2.6854 0.3724 33 1 1.7359 -3.9261 2.4762 34 1 1.5575 -2.4076 3.3926 35 1 2.9404 -5.2460 3.6856 36 1 3.0534 -5.4050 1.9164 37 1 5.3801 -6.2318 2.1385 38 1 5.2678 -6.0731 3.9078 39 1 3.3895 -7.6912 3.9345 40 1 3.5014 -7.8504 2.1653 41 1 3.2924 -11.3274 3.3615 42 1 5.1628 -1.5032 2.4766 43 1 3.7927 -0.8276 3.3927 44 1 3.9346 -1.2557 0.3725 45 1 3.9337 0.3070 1.2258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594305804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:17 Heat of formation + Delta-G solvation = -96.846765 kcal Electronic energy + Delta-G solvation = -20634.826876 eV Core-core repulsion = 17649.756700 eV Total energy + Delta-G solvation = -2985.070176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30674 -39.26880 -36.37930 -36.13188 -34.11885 -32.43330 -32.00272 -29.69608 -28.01287 -26.60222 -25.40479 -23.86621 -22.65445 -21.75909 -20.70337 -19.90672 -18.53081 -18.01303 -16.89854 -16.78199 -16.45323 -15.69605 -15.61079 -15.14134 -15.10489 -14.79528 -14.68273 -14.20196 -13.89358 -13.80359 -13.64192 -13.12576 -13.04554 -13.02337 -12.72312 -12.63713 -12.53113 -12.41295 -12.28122 -12.08061 -11.81752 -11.58025 -11.45961 -11.36432 -11.28810 -11.15613 -11.03325 -10.66025 -10.55220 -9.62417 -8.20915 -6.30796 1.39000 1.39184 1.53204 1.62168 2.03760 2.41394 3.11962 3.59025 3.74113 3.78783 3.90860 4.13858 4.16451 4.22448 4.24950 4.32501 4.42739 4.54155 4.56550 4.59374 4.73993 4.84436 4.87562 4.89298 4.93844 4.97008 5.02655 5.07805 5.09655 5.11985 5.14602 5.17053 5.17973 5.35734 5.41842 5.51068 5.53406 5.63511 5.67051 5.74239 5.85654 6.26412 6.39495 6.84401 7.19077 7.37857 8.90887 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039136 B = 0.003110 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.290981 B = 8999.780650 C = 9442.433605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.077 4.077 5 C -0.129 4.129 6 C 0.098 3.902 7 N -0.611 5.611 8 C 0.512 3.488 9 O -0.589 6.589 10 C -0.127 4.127 11 C -0.082 4.082 12 C 0.028 3.972 13 C -0.548 4.548 14 H 0.050 0.950 15 C 0.003 3.997 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.274 1.274 21 C 0.106 3.894 22 C -0.123 4.123 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.002 0.998 40 H 0.001 0.999 41 H 0.265 0.735 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.351 24.540 -5.264 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.095 4.095 5 C -0.167 4.167 6 C -0.024 4.024 7 N -0.344 5.344 8 C 0.302 3.698 9 O -0.469 6.469 10 C -0.167 4.167 11 C -0.120 4.120 12 C -0.010 4.010 13 C -0.586 4.586 14 H 0.068 0.932 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.787 3.213 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.016 4.016 22 C -0.161 4.161 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.020 0.980 40 H 0.019 0.981 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.843 24.475 -5.221 26.542 hybrid contribution 0.754 -0.991 0.054 1.246 sum -8.089 23.484 -5.167 25.370 Atomic orbital electron populations 1.21888 0.94510 1.02137 1.01996 1.21100 0.96286 0.96231 0.97221 1.21893 1.01117 0.95564 1.02024 1.21173 0.93881 0.95375 0.99077 1.22049 1.02228 0.95545 0.96879 1.22054 0.77763 1.02979 0.99577 1.48264 1.08167 1.06118 1.71861 1.21117 0.86642 0.87302 0.74707 1.90637 1.16651 1.87342 1.52292 1.21681 0.99707 0.90189 1.05114 1.21165 0.96667 0.94113 1.00033 1.19006 0.95150 0.91273 0.95522 1.21711 0.93915 0.92904 1.50021 0.93197 1.25902 0.97847 1.00934 0.94769 1.70067 1.17868 1.17529 1.51427 0.85446 0.79186 0.78620 0.78095 1.19333 1.19967 1.19973 1.21668 0.98520 0.82232 0.99210 1.21982 0.96606 1.01103 0.96360 0.92155 0.92709 0.92169 0.92256 0.92175 0.92574 0.92616 0.89922 0.88304 0.92648 0.88998 0.89377 0.87540 0.87749 0.94337 0.94216 0.97972 0.98055 0.92616 0.91674 0.90054 0.93218 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.84 71.98 0.64 -0.83 16 2 C -0.09 -1.04 2.51 -10.79 -0.03 -1.07 16 3 C -0.15 -1.54 8.84 71.98 0.64 -0.90 16 4 C -0.08 -0.99 1.74 -10.76 -0.02 -1.01 16 5 C -0.13 -1.84 5.04 30.67 0.15 -1.68 16 6 C 0.10 1.71 6.34 86.36 0.55 2.26 16 7 N -0.61 -15.27 2.97 -818.91 -2.43 -17.70 16 8 C 0.51 17.56 7.70 87.66 0.67 18.23 16 9 O -0.59 -25.35 15.40 -3.03 -0.05 -25.40 16 10 C -0.13 -4.37 4.05 29.85 0.12 -4.25 16 11 C -0.08 -3.73 4.44 30.60 0.14 -3.59 16 12 C 0.03 1.49 4.97 29.85 0.15 1.64 16 13 C -0.55 -32.75 9.11 25.60 0.23 -32.52 16 14 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 15 C 0.00 0.20 5.46 84.66 0.46 0.67 16 16 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 17 Si 0.96 45.67 29.54 68.60 2.03 47.69 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 C 0.11 2.29 6.43 86.36 0.56 2.85 16 22 C -0.12 -2.01 5.04 30.67 0.15 -1.86 16 23 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 0.59 6.40 -2.38 -0.02 0.57 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.60 6.40 -2.38 -0.02 0.59 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.04 6.36 -2.39 -0.02 1.03 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.62 5.93 -2.39 -0.01 1.61 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.11 3.24 7.94 -2.39 -0.02 3.22 16 36 H 0.10 3.21 7.69 -2.39 -0.02 3.20 16 37 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 38 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 39 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.06 1.76 7.01 -2.39 -0.02 1.75 16 43 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 1.21 6.36 -2.39 -0.02 1.19 16 Total: -1.00 -71.95 347.07 5.17 -66.78 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 0.93 Total: 7.15 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 4.41 Total: -22.09 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -2.15 Total: -74.13 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -71.95 5.17 -66.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594305804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.070 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds