Wall clock time and date at job start Mon Mar 30 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47100 * 2 1 4 4 C 1.53002 * 109.52344 * 59.91593 * 3 2 1 5 5 C 1.53036 * 109.49800 * 180.02562 * 3 2 1 6 6 C 1.53045 * 109.53995 * 181.31558 * 5 3 2 7 7 C 1.53191 * 109.31061 * 298.63600 * 6 5 3 8 8 N 1.46924 * 108.77693 * 54.63266 * 7 6 5 9 9 C 1.34773 * 120.63180 * 126.37172 * 8 7 6 10 10 O 1.21283 * 120.00360 * 179.72484 * 9 8 7 11 11 C 1.50706 * 120.00081 * 359.97438 * 9 8 7 12 12 C 1.52998 * 109.47348 * 179.72561 * 11 9 8 13 13 C 1.52996 * 109.46929 * 179.97438 * 12 11 9 14 14 C 1.50709 * 109.47079 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99331 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00242 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00390 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47408 * 89.99806 * 18 16 14 20 20 H 1.48501 * 109.47447 * 210.00334 * 18 16 14 21 21 H 1.48505 * 109.46796 * 330.00178 * 18 16 14 22 22 C 1.46931 * 118.74139 * 306.64213 * 8 7 6 23 23 H 1.08995 * 109.47169 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47247 * 300.00041 * 1 2 3 25 25 H 1.08996 * 109.47007 * 59.99992 * 1 2 3 26 26 H 1.09001 * 109.47247 * 239.99959 * 2 1 3 27 27 H 1.09001 * 109.47128 * 119.99274 * 2 1 3 28 28 H 1.08999 * 109.46920 * 180.08249 * 4 3 2 29 29 H 1.08998 * 109.47282 * 300.08106 * 4 3 2 30 30 H 1.08998 * 109.46722 * 60.08548 * 4 3 2 31 31 H 1.09002 * 109.46377 * 61.29347 * 5 3 2 32 32 H 1.09005 * 109.44856 * 301.32536 * 5 3 2 33 33 H 1.08990 * 109.49843 * 178.68071 * 6 5 3 34 34 H 1.09006 * 109.49499 * 58.58279 * 6 5 3 35 35 H 1.08999 * 109.58467 * 294.84696 * 7 6 5 36 36 H 1.08998 * 109.58894 * 174.42340 * 7 6 5 37 37 H 1.09001 * 109.46564 * 299.73030 * 11 9 8 38 38 H 1.08998 * 109.47012 * 59.72084 * 11 9 8 39 39 H 1.09000 * 109.46986 * 300.00089 * 12 11 9 40 40 H 1.09002 * 109.46857 * 60.00224 * 12 11 9 41 41 H 1.09000 * 109.47441 * 299.99910 * 13 12 11 42 42 H 1.08994 * 109.47235 * 60.00181 * 13 12 11 43 43 H 0.96994 * 120.00439 * 179.97438 * 17 16 14 44 44 H 1.08995 * 109.59030 * 173.14421 * 22 8 7 45 45 H 1.08998 * 109.58220 * 293.57198 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5289 2.1656 1.2478 5 6 3.5704 1.4433 -0.0006 6 6 4.0816 2.8854 0.0325 7 6 3.5972 3.6235 -1.2195 8 7 2.1353 3.5032 -1.3035 9 6 1.3619 4.6002 -1.4246 10 8 0.1565 4.4874 -1.4980 11 6 1.9951 5.9669 -1.4747 12 6 0.9040 7.0295 -1.6206 13 6 1.5469 8.4169 -1.6707 14 6 0.4722 9.4637 -1.8138 15 1 -0.5655 9.1688 -1.8636 16 6 0.8137 10.7978 -1.8802 17 7 2.0774 11.1570 -1.8191 18 14 -0.5183 12.0953 -2.0583 19 1 -0.9665 12.5327 -0.7119 20 1 0.0223 13.2608 -2.8030 21 1 -1.6697 11.5236 -2.8018 22 6 1.5321 2.1646 -1.2467 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8901 28 1 1.8916 3.1935 1.2462 29 1 0.4390 2.1648 1.2473 30 1 1.8923 1.6535 2.1388 31 1 3.9334 0.9499 -0.9023 32 1 3.9340 0.9089 0.8771 33 1 5.1713 2.8847 0.0556 34 1 3.6986 3.3868 0.9214 35 1 4.0519 3.1787 -2.1047 36 1 3.8741 4.6756 -1.1535 37 1 2.5529 6.1427 -0.5548 38 1 2.6727 6.0224 -2.3266 39 1 0.3463 6.8536 -2.5404 40 1 0.2265 6.9740 -0.7685 41 1 2.1044 8.5926 -0.7507 42 1 2.2247 8.4728 -2.5225 43 1 2.3178 12.0955 -1.8661 44 1 0.4469 2.2545 -1.1986 45 1 1.8150 1.5985 -2.1342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594310712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:09 Heat of formation + Delta-G solvation = -73.574041 kcal Electronic energy + Delta-G solvation = -21137.202330 eV Core-core repulsion = 18153.141335 eV Total energy + Delta-G solvation = -2984.060995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52636 -38.25056 -35.06642 -34.17379 -32.38412 -31.99972 -29.92183 -28.22511 -27.11526 -25.56012 -24.35530 -23.42288 -21.63059 -20.37329 -19.08873 -18.38458 -16.90219 -16.24444 -15.72755 -15.56667 -15.17714 -14.84134 -14.38720 -14.10339 -13.87487 -13.77696 -13.41308 -13.08700 -12.76725 -12.44062 -12.35663 -12.18171 -11.84913 -11.73313 -11.49750 -11.35947 -11.26104 -11.12695 -10.78927 -10.75260 -10.57464 -10.51241 -10.46161 -10.38486 -9.63897 -9.56894 -9.21636 -8.97971 -8.52176 -8.29716 -5.95505 -3.96731 2.95672 3.12723 3.36383 3.42046 3.47156 4.34769 4.50881 4.51594 4.56563 4.80102 4.93086 4.97994 5.07189 5.12157 5.21527 5.34192 5.39930 5.40553 5.49445 5.59393 5.61705 5.69967 5.73091 5.73490 5.74596 5.75893 5.79787 5.84349 5.94431 5.98734 6.03201 6.15154 6.28898 6.34089 6.62180 6.76427 6.97386 7.19599 7.55641 7.73763 7.86724 8.05453 8.48350 8.50079 9.10373 9.67120 11.16042 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035149 B = 0.003523 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.421288 B = 7946.053692 C = 8400.313627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C -0.076 4.076 4 C -0.141 4.141 5 C -0.107 4.107 6 C -0.139 4.139 7 C 0.106 3.894 8 N -0.619 5.619 9 C 0.515 3.485 10 O -0.539 6.539 11 C -0.137 4.137 12 C -0.095 4.095 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.120 3.880 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.094 0.906 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 -23.141 4.224 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.077 4.077 4 C -0.199 4.199 5 C -0.145 4.145 6 C -0.177 4.177 7 C -0.017 4.017 8 N -0.353 5.353 9 C 0.305 3.695 10 O -0.415 6.415 11 C -0.177 4.177 12 C -0.133 4.133 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.003 4.003 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.909 -23.023 4.162 23.906 hybrid contribution -0.450 0.722 -0.065 0.853 sum 4.460 -22.301 4.098 23.109 Atomic orbital electron populations 1.21903 0.95698 1.01455 1.02569 1.21511 0.96171 0.95096 1.01900 1.20862 0.95442 0.95274 0.96140 1.21918 1.01319 1.00533 0.96084 1.21568 0.94378 0.96603 1.01951 1.21990 1.00719 0.96165 0.98844 1.21738 0.80052 1.02126 0.97806 1.48181 1.06804 1.06224 1.74123 1.21242 0.87131 0.86453 0.74655 1.90655 1.14699 1.86804 1.49323 1.21860 1.01205 0.91244 1.03385 1.21449 0.95789 0.94517 1.01523 1.19128 0.95996 0.89456 0.97053 1.21280 0.93491 0.91253 1.49509 0.92592 1.25017 0.95344 0.98714 0.95448 1.69962 1.16023 1.16637 1.51171 0.86595 0.82099 0.81204 0.78136 1.20689 1.21276 1.19832 1.21553 0.99944 0.82540 0.96256 0.92933 0.92238 0.92271 0.91988 0.91826 0.92177 0.92302 0.92952 0.91897 0.91806 0.90770 0.90926 0.91597 0.89076 0.89523 0.89501 0.92746 0.92769 0.96657 0.96631 0.93096 0.88823 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.21 37.16 0.34 -0.97 16 2 C -0.11 -0.84 5.00 -26.73 -0.13 -0.98 16 3 C -0.08 -0.70 0.55 -154.61 -0.08 -0.78 16 4 C -0.14 -1.46 7.62 37.16 0.28 -1.17 16 5 C -0.11 -0.84 4.71 -26.69 -0.13 -0.97 16 6 C -0.14 -1.16 5.74 -26.61 -0.15 -1.31 16 7 C 0.11 1.05 6.34 -3.71 -0.02 1.03 16 8 N -0.62 -8.00 2.42 -173.03 -0.42 -8.41 16 9 C 0.52 8.71 7.70 -10.98 -0.08 8.62 16 10 O -0.54 -11.09 15.40 5.56 0.09 -11.01 16 11 C -0.14 -2.36 4.05 -27.88 -0.11 -2.47 16 12 C -0.09 -2.10 4.44 -26.73 -0.12 -2.22 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 18 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.12 1.38 4.54 -3.93 -0.02 1.36 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 25 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.71 5.97 -51.93 -0.31 0.40 16 29 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.68 6.34 -51.93 -0.33 0.35 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.90 5.93 -51.93 -0.31 0.60 16 37 H 0.09 1.36 7.71 -51.93 -0.40 0.96 16 38 H 0.09 1.37 7.93 -51.93 -0.41 0.95 16 39 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 40 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.09 1.27 5.62 -51.93 -0.29 0.98 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -32.65 342.13 -8.33 -40.99 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -8.09 Total: -3.97 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.78 Total: -13.39 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.32 Total: -34.97 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.65 -8.33 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594310712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.587 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds