Wall clock time and date at job start Mon Mar 30 2020 06:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47100 * 2 1 4 4 C 1.53002 * 109.52344 * 59.91593 * 3 2 1 5 5 C 1.53036 * 109.49800 * 180.02562 * 3 2 1 6 6 C 1.53045 * 109.53995 * 181.31558 * 5 3 2 7 7 C 1.53191 * 109.31061 * 298.63600 * 6 5 3 8 8 N 1.46924 * 108.77693 * 54.63266 * 7 6 5 9 9 C 1.34773 * 120.63180 * 126.37172 * 8 7 6 10 10 O 1.21283 * 120.00360 * 179.72484 * 9 8 7 11 11 C 1.50706 * 120.00081 * 359.97438 * 9 8 7 12 12 C 1.52998 * 109.47348 * 179.72561 * 11 9 8 13 13 C 1.52996 * 109.46929 * 179.97438 * 12 11 9 14 14 C 1.50709 * 109.47079 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99331 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00242 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00390 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47408 * 89.99806 * 18 16 14 20 20 H 1.48501 * 109.47447 * 210.00334 * 18 16 14 21 21 H 1.48505 * 109.46796 * 330.00178 * 18 16 14 22 22 C 1.46931 * 118.74139 * 306.64213 * 8 7 6 23 23 H 1.08995 * 109.47169 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47247 * 300.00041 * 1 2 3 25 25 H 1.08996 * 109.47007 * 59.99992 * 1 2 3 26 26 H 1.09001 * 109.47247 * 239.99959 * 2 1 3 27 27 H 1.09001 * 109.47128 * 119.99274 * 2 1 3 28 28 H 1.08999 * 109.46920 * 180.08249 * 4 3 2 29 29 H 1.08998 * 109.47282 * 300.08106 * 4 3 2 30 30 H 1.08998 * 109.46722 * 60.08548 * 4 3 2 31 31 H 1.09002 * 109.46377 * 61.29347 * 5 3 2 32 32 H 1.09005 * 109.44856 * 301.32536 * 5 3 2 33 33 H 1.08990 * 109.49843 * 178.68071 * 6 5 3 34 34 H 1.09006 * 109.49499 * 58.58279 * 6 5 3 35 35 H 1.08999 * 109.58467 * 294.84696 * 7 6 5 36 36 H 1.08998 * 109.58894 * 174.42340 * 7 6 5 37 37 H 1.09001 * 109.46564 * 299.73030 * 11 9 8 38 38 H 1.08998 * 109.47012 * 59.72084 * 11 9 8 39 39 H 1.09000 * 109.46986 * 300.00089 * 12 11 9 40 40 H 1.09002 * 109.46857 * 60.00224 * 12 11 9 41 41 H 1.09000 * 109.47441 * 299.99910 * 13 12 11 42 42 H 1.08994 * 109.47235 * 60.00181 * 13 12 11 43 43 H 0.96994 * 120.00439 * 179.97438 * 17 16 14 44 44 H 1.08995 * 109.59030 * 173.14421 * 22 8 7 45 45 H 1.08998 * 109.58220 * 293.57198 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5289 2.1656 1.2478 5 6 3.5704 1.4433 -0.0006 6 6 4.0816 2.8854 0.0325 7 6 3.5972 3.6235 -1.2195 8 7 2.1353 3.5032 -1.3035 9 6 1.3619 4.6002 -1.4246 10 8 0.1565 4.4874 -1.4980 11 6 1.9951 5.9669 -1.4747 12 6 0.9040 7.0295 -1.6206 13 6 1.5469 8.4169 -1.6707 14 6 0.4722 9.4637 -1.8138 15 1 -0.5655 9.1688 -1.8636 16 6 0.8137 10.7978 -1.8802 17 7 2.0774 11.1570 -1.8191 18 14 -0.5183 12.0953 -2.0583 19 1 -0.9665 12.5327 -0.7119 20 1 0.0223 13.2608 -2.8030 21 1 -1.6697 11.5236 -2.8018 22 6 1.5321 2.1646 -1.2467 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8901 28 1 1.8916 3.1935 1.2462 29 1 0.4390 2.1648 1.2473 30 1 1.8923 1.6535 2.1388 31 1 3.9334 0.9499 -0.9023 32 1 3.9340 0.9089 0.8771 33 1 5.1713 2.8847 0.0556 34 1 3.6986 3.3868 0.9214 35 1 4.0519 3.1787 -2.1047 36 1 3.8741 4.6756 -1.1535 37 1 2.5529 6.1427 -0.5548 38 1 2.6727 6.0224 -2.3266 39 1 0.3463 6.8536 -2.5404 40 1 0.2265 6.9740 -0.7685 41 1 2.1044 8.5926 -0.7507 42 1 2.2247 8.4728 -2.5225 43 1 2.3178 12.0955 -1.8661 44 1 0.4469 2.2545 -1.1986 45 1 1.8150 1.5985 -2.1342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594310712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:08 Heat of formation + Delta-G solvation = -91.612892 kcal Electronic energy + Delta-G solvation = -21137.984554 eV Core-core repulsion = 18153.141335 eV Total energy + Delta-G solvation = -2984.843218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.55428 -39.37551 -36.16170 -35.97928 -34.01349 -33.22483 -30.79823 -29.82492 -28.09663 -26.82134 -25.27635 -24.99415 -22.47645 -22.10044 -20.27162 -19.24034 -18.51153 -18.00706 -16.85211 -16.83542 -16.47286 -16.00196 -15.73624 -15.22743 -14.91535 -14.66203 -14.42462 -14.27432 -14.08917 -13.87766 -13.67271 -13.22302 -13.10330 -13.02901 -12.66465 -12.63262 -12.47858 -12.39952 -12.22927 -12.01627 -11.83296 -11.58111 -11.48625 -11.45575 -11.30369 -11.19225 -11.10973 -10.64525 -10.54908 -9.56738 -8.20763 -6.30845 1.39061 1.40287 1.51914 1.63814 2.04543 2.41380 3.12016 3.54122 3.74587 3.82868 3.88078 4.10137 4.15801 4.21699 4.24331 4.31990 4.39026 4.49504 4.57360 4.70793 4.73143 4.79230 4.81966 4.83491 4.94029 4.94539 5.00984 5.06823 5.09360 5.13194 5.17265 5.18867 5.20814 5.29510 5.36023 5.44652 5.52240 5.57634 5.67907 5.73867 5.85365 6.26322 6.41493 6.84052 7.21003 7.37766 8.90815 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035149 B = 0.003523 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.421288 B = 7946.053692 C = 8400.313627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 C -0.071 4.071 4 C -0.140 4.140 5 C -0.104 4.104 6 C -0.136 4.136 7 C 0.096 3.904 8 N -0.608 5.608 9 C 0.513 3.487 10 O -0.587 6.587 11 C -0.127 4.127 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.549 4.549 15 H 0.050 0.950 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.269 1.269 22 C 0.116 3.884 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.039 0.961 40 H 0.038 0.962 41 H 0.001 0.999 42 H 0.002 0.998 43 H 0.265 0.735 44 H 0.067 0.933 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 -24.470 4.388 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.141 4.141 3 C -0.072 4.072 4 C -0.197 4.197 5 C -0.141 4.141 6 C -0.174 4.174 7 C -0.026 4.026 8 N -0.340 5.340 9 C 0.303 3.697 10 O -0.467 6.467 11 C -0.167 4.167 12 C -0.119 4.119 13 C -0.009 4.009 14 C -0.587 4.587 15 H 0.068 0.932 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.786 3.214 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.193 1.193 22 C -0.006 4.006 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.257 -24.389 4.335 25.549 hybrid contribution -0.815 1.103 -0.109 1.376 sum 5.442 -23.286 4.226 24.284 Atomic orbital electron populations 1.21903 0.96573 1.01869 1.01388 1.21493 0.95343 0.94082 1.03196 1.20845 0.96759 0.95624 0.93938 1.21898 1.00260 0.99884 0.97649 1.21573 0.92701 0.96465 1.03383 1.21982 1.02091 0.96105 0.97174 1.22063 0.77835 1.02859 0.99796 1.48194 1.08068 1.05754 1.72005 1.21073 0.86646 0.87237 0.74747 1.90636 1.16617 1.87448 1.52035 1.21679 0.99694 0.90245 1.05073 1.21159 0.96662 0.94085 1.00025 1.19001 0.95145 0.91268 0.95505 1.21683 0.93944 0.92707 1.50329 0.93184 1.25900 0.97851 1.00949 0.94716 1.70062 1.17906 1.17491 1.51407 0.85497 0.79073 0.78242 0.78550 1.19682 1.20181 1.19336 1.21699 0.98575 0.81994 0.98372 0.91661 0.93214 0.93765 0.90712 0.90385 0.94025 0.94012 0.91312 0.90513 0.90274 0.88375 0.92160 0.89472 0.89127 0.87834 0.87641 0.94251 0.94346 0.98080 0.98007 0.92616 0.91502 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.21 71.98 0.66 -1.87 16 2 C -0.10 -1.35 5.00 30.60 0.15 -1.20 16 3 C -0.07 -1.16 0.55 -52.25 -0.03 -1.19 16 4 C -0.14 -2.79 7.62 71.98 0.55 -2.24 16 5 C -0.10 -1.27 4.71 30.62 0.14 -1.12 16 6 C -0.14 -1.86 5.74 30.67 0.18 -1.68 16 7 C 0.10 1.68 6.34 86.36 0.55 2.23 16 8 N -0.61 -15.21 2.42 -819.73 -1.98 -17.19 16 9 C 0.51 17.57 7.70 87.66 0.67 18.25 16 10 O -0.59 -25.22 15.40 -3.04 -0.05 -25.27 16 11 C -0.13 -4.39 4.05 29.85 0.12 -4.27 16 12 C -0.08 -3.72 4.44 30.59 0.14 -3.58 16 13 C 0.03 1.51 4.97 29.85 0.15 1.66 16 14 C -0.55 -32.86 9.11 25.60 0.23 -32.63 16 15 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 16 C 0.00 0.23 5.46 84.65 0.46 0.69 16 17 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 18 Si 0.96 45.69 29.54 68.60 2.03 47.71 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 22 C 0.12 2.58 4.54 86.22 0.39 2.97 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.05 0.87 6.43 -2.39 -0.02 0.86 16 25 H 0.04 0.82 6.57 -2.39 -0.02 0.81 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.04 0.97 5.97 -2.39 -0.01 0.96 16 29 H 0.04 0.96 6.43 -2.39 -0.02 0.94 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.00 6.34 -2.38 -0.02 0.99 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.61 5.93 -2.39 -0.01 1.59 16 37 H 0.10 3.21 7.71 -2.39 -0.02 3.19 16 38 H 0.11 3.24 7.93 -2.39 -0.02 3.22 16 39 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 40 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 41 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.07 1.88 5.62 -2.39 -0.01 1.87 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -72.05 342.13 5.59 -66.46 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.93 Total: 8.77 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 4.37 Total: -24.00 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -1.70 Total: -73.68 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -72.05 5.59 -66.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594310712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.152 kcal (2) G-P(sol) polarization free energy of solvation -72.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds