Wall clock time and date at job start Mon Mar 30 2020 06:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47326 * 2 1 4 4 C 1.53000 * 109.52392 * 299.91928 * 3 2 1 5 5 C 1.53109 * 109.49235 * 179.85653 * 3 2 1 6 6 C 1.53036 * 109.50477 * 178.70090 * 5 3 2 7 7 C 1.53187 * 109.33909 * 61.34678 * 6 5 3 8 8 N 1.46931 * 108.77858 * 305.34763 * 7 6 5 9 9 C 1.34772 * 120.63173 * 233.63340 * 8 7 6 10 10 O 1.21277 * 119.99811 * 179.97438 * 9 8 7 11 11 C 1.50704 * 120.00006 * 359.97438 * 9 8 7 12 12 C 1.52997 * 109.46920 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47163 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47461 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99943 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00343 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99570 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00364 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47029 * 89.99746 * 18 16 14 20 20 H 1.48493 * 109.47392 * 209.99994 * 18 16 14 21 21 H 1.48504 * 109.46997 * 330.00589 * 18 16 14 22 22 C 1.46925 * 118.73466 * 53.60925 * 8 7 6 23 23 H 1.09002 * 109.47071 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47174 * 300.00040 * 1 2 3 25 25 H 1.09006 * 109.46661 * 60.00006 * 1 2 3 26 26 H 1.09009 * 109.47179 * 240.00283 * 2 1 3 27 27 H 1.08995 * 109.47158 * 120.00573 * 2 1 3 28 28 H 1.09003 * 109.47112 * 180.02562 * 4 3 2 29 29 H 1.08998 * 109.47475 * 300.08260 * 4 3 2 30 30 H 1.09001 * 109.47364 * 60.08271 * 4 3 2 31 31 H 1.08997 * 109.50059 * 58.67028 * 5 3 2 32 32 H 1.09003 * 109.44365 * 298.69704 * 5 3 2 33 33 H 1.09002 * 109.49886 * 301.37799 * 6 5 3 34 34 H 1.09000 * 109.49395 * 181.31276 * 6 5 3 35 35 H 1.09004 * 109.58908 * 65.13475 * 7 6 5 36 36 H 1.09003 * 109.58748 * 185.41538 * 7 6 5 37 37 H 1.09001 * 109.47103 * 299.99900 * 11 9 8 38 38 H 1.08999 * 109.47147 * 60.00424 * 11 9 8 39 39 H 1.08992 * 109.47811 * 300.00447 * 12 11 9 40 40 H 1.09009 * 109.47273 * 60.00437 * 12 11 9 41 41 H 1.09004 * 109.47265 * 300.00571 * 13 12 11 42 42 H 1.09007 * 109.47122 * 60.00169 * 13 12 11 43 43 H 0.97004 * 119.99766 * 180.02562 * 17 16 14 44 44 H 1.08995 * 109.58986 * 66.17814 * 22 8 7 45 45 H 1.09003 * 109.58612 * 186.60908 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5324 2.1643 -1.2498 5 6 3.5712 1.4430 0.0036 6 6 4.0817 2.8853 -0.0291 7 6 3.5946 3.6243 1.2212 8 7 2.1324 3.5042 1.3020 9 6 1.3588 4.6014 1.4205 10 8 0.1530 4.4889 1.4858 11 6 1.9920 5.9679 1.4718 12 6 0.9002 7.0312 1.6066 13 6 1.5430 8.4185 1.6594 14 6 0.4677 9.4658 1.7928 15 1 -0.5705 9.1714 1.8353 16 6 0.8091 10.8000 1.8597 17 7 2.0734 11.1586 1.8074 18 14 -0.5239 12.0982 2.0243 19 1 -0.7937 12.3510 3.4626 20 1 -0.0726 13.3560 1.3768 21 1 -1.7652 11.6195 1.3646 22 6 1.5298 2.1652 1.2506 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.8966 3.1917 -1.2492 29 1 1.8957 1.6497 -2.1394 30 1 0.4424 2.1661 -1.2509 31 1 3.9373 0.9081 -0.8727 32 1 3.9320 0.9503 0.9065 33 1 3.7008 3.3860 -0.9192 34 1 5.1715 2.8850 -0.0500 35 1 4.0472 3.1803 2.1078 36 1 3.8739 4.6759 1.1561 37 1 2.6634 6.0253 2.3286 38 1 2.5564 6.1415 0.5557 39 1 0.2291 6.9737 0.7497 40 1 0.3353 6.8579 2.5227 41 1 2.2139 8.4758 2.5167 42 1 2.1082 8.5922 0.7436 43 1 2.3137 12.0972 1.8548 44 1 1.8141 1.6022 2.1395 45 1 0.4444 2.2545 1.2037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594310713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:13 Heat of formation + Delta-G solvation = -73.636829 kcal Electronic energy + Delta-G solvation = -21136.279573 eV Core-core repulsion = 18152.215855 eV Total energy + Delta-G solvation = -2984.063718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50952 -38.24019 -35.06079 -34.17361 -32.38407 -31.99920 -29.91013 -28.22662 -27.11153 -25.55482 -24.35276 -23.41911 -21.62756 -20.37023 -19.08633 -18.38822 -16.90081 -16.24389 -15.72846 -15.56316 -15.17457 -14.84151 -14.38729 -14.09282 -13.87351 -13.77363 -13.41336 -13.08503 -12.76776 -12.44024 -12.35375 -12.18096 -11.84727 -11.73177 -11.49808 -11.36240 -11.26017 -11.12561 -10.79143 -10.74874 -10.57342 -10.51225 -10.45995 -10.38247 -9.63880 -9.56868 -9.21589 -8.98003 -8.52016 -8.29690 -5.95563 -3.96718 2.95682 3.12898 3.36379 3.42041 3.47134 4.34630 4.51000 4.51799 4.56579 4.80215 4.93005 4.98130 5.06539 5.12366 5.21497 5.34301 5.39997 5.40513 5.49690 5.59496 5.61831 5.70014 5.73130 5.73529 5.74655 5.75967 5.79937 5.84507 5.94628 5.98821 6.03252 6.15041 6.28989 6.34302 6.62186 6.76424 6.97390 7.19620 7.55679 7.73749 7.86692 8.05424 8.48392 8.50113 9.10374 9.67081 11.15972 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.003524 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.174653 B = 7944.349423 C = 8398.121574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C -0.076 4.076 4 C -0.141 4.141 5 C -0.107 4.107 6 C -0.139 4.139 7 C 0.106 3.894 8 N -0.619 5.619 9 C 0.515 3.485 10 O -0.539 6.539 11 C -0.137 4.137 12 C -0.095 4.095 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.120 3.880 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.060 0.940 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -23.144 -4.161 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.077 4.077 4 C -0.198 4.198 5 C -0.145 4.145 6 C -0.177 4.177 7 C -0.017 4.017 8 N -0.353 5.353 9 C 0.305 3.695 10 O -0.415 6.415 11 C -0.177 4.177 12 C -0.133 4.133 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.003 4.003 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.919 -23.025 -4.117 23.902 hybrid contribution -0.448 0.722 0.089 0.854 sum 4.471 -22.303 -4.028 23.101 Atomic orbital electron populations 1.21903 0.95700 1.01447 1.02567 1.21511 0.96171 0.95123 1.01891 1.20948 0.95409 0.95246 0.96088 1.21909 1.01334 1.00536 0.96050 1.21579 0.94387 0.96593 1.01943 1.21986 1.00701 0.96162 0.98859 1.21731 0.80040 1.02129 0.97817 1.48181 1.06794 1.06211 1.74157 1.21240 0.87140 0.86456 0.74646 1.90653 1.14665 1.86805 1.49358 1.21859 1.01204 0.91245 1.03386 1.21448 0.95781 0.94513 1.01539 1.19128 0.95994 0.89458 0.97048 1.21281 0.93442 0.91243 1.49572 0.92593 1.25021 0.95351 0.98717 0.95443 1.69968 1.16006 1.16654 1.51156 0.86593 0.82184 0.81062 0.78187 1.20683 1.21278 1.19835 1.21642 0.99941 0.82493 0.96215 0.92939 0.92274 0.92242 0.91838 0.91996 0.92172 0.92941 0.92317 0.91803 0.91909 0.90924 0.90781 0.91625 0.89075 0.89502 0.89522 0.92763 0.92755 0.96647 0.96648 0.93100 0.92186 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.22 37.16 0.34 -0.98 16 2 C -0.11 -0.84 4.99 -26.73 -0.13 -0.98 16 3 C -0.08 -0.70 0.55 -154.35 -0.08 -0.78 16 4 C -0.14 -1.46 7.63 37.16 0.28 -1.17 16 5 C -0.11 -0.84 4.72 -26.66 -0.13 -0.97 16 6 C -0.14 -1.16 5.74 -26.62 -0.15 -1.31 16 7 C 0.11 1.05 6.34 -3.71 -0.02 1.03 16 8 N -0.62 -7.99 2.41 -172.77 -0.42 -8.41 16 9 C 0.52 8.70 7.70 -10.99 -0.08 8.62 16 10 O -0.54 -11.09 15.39 5.56 0.09 -11.01 16 11 C -0.14 -2.36 4.05 -27.88 -0.11 -2.47 16 12 C -0.09 -2.10 4.44 -26.73 -0.12 -2.22 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 18 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.12 1.38 4.58 -3.71 -0.02 1.36 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 25 H 0.06 0.52 6.44 -51.93 -0.33 0.19 16 26 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.71 5.97 -51.93 -0.31 0.40 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.66 6.44 -51.93 -0.33 0.32 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.68 6.33 -51.93 -0.33 0.35 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.90 5.95 -51.93 -0.31 0.59 16 37 H 0.09 1.37 7.94 -51.93 -0.41 0.95 16 38 H 0.09 1.36 7.69 -51.93 -0.40 0.96 16 39 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 40 H 0.05 1.25 8.10 -51.92 -0.42 0.83 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.27 5.62 -51.93 -0.29 0.98 16 LS Contribution 342.20 15.07 5.16 5.16 Total: -1.00 -32.65 342.20 -8.33 -40.98 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -8.09 Total: -3.97 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.78 Total: -13.39 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.32 Total: -34.96 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.65 -8.33 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594310713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.656 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds