Wall clock time and date at job start Mon Mar 30 2020 06:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47326 * 2 1 4 4 C 1.53000 * 109.52392 * 299.91928 * 3 2 1 5 5 C 1.53109 * 109.49235 * 179.85653 * 3 2 1 6 6 C 1.53036 * 109.50477 * 178.70090 * 5 3 2 7 7 C 1.53187 * 109.33909 * 61.34678 * 6 5 3 8 8 N 1.46931 * 108.77858 * 305.34763 * 7 6 5 9 9 C 1.34772 * 120.63173 * 233.63340 * 8 7 6 10 10 O 1.21277 * 119.99811 * 179.97438 * 9 8 7 11 11 C 1.50704 * 120.00006 * 359.97438 * 9 8 7 12 12 C 1.52997 * 109.46920 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47163 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47461 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99943 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00343 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99570 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00364 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47029 * 89.99746 * 18 16 14 20 20 H 1.48493 * 109.47392 * 209.99994 * 18 16 14 21 21 H 1.48504 * 109.46997 * 330.00589 * 18 16 14 22 22 C 1.46925 * 118.73466 * 53.60925 * 8 7 6 23 23 H 1.09002 * 109.47071 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47174 * 300.00040 * 1 2 3 25 25 H 1.09006 * 109.46661 * 60.00006 * 1 2 3 26 26 H 1.09009 * 109.47179 * 240.00283 * 2 1 3 27 27 H 1.08995 * 109.47158 * 120.00573 * 2 1 3 28 28 H 1.09003 * 109.47112 * 180.02562 * 4 3 2 29 29 H 1.08998 * 109.47475 * 300.08260 * 4 3 2 30 30 H 1.09001 * 109.47364 * 60.08271 * 4 3 2 31 31 H 1.08997 * 109.50059 * 58.67028 * 5 3 2 32 32 H 1.09003 * 109.44365 * 298.69704 * 5 3 2 33 33 H 1.09002 * 109.49886 * 301.37799 * 6 5 3 34 34 H 1.09000 * 109.49395 * 181.31276 * 6 5 3 35 35 H 1.09004 * 109.58908 * 65.13475 * 7 6 5 36 36 H 1.09003 * 109.58748 * 185.41538 * 7 6 5 37 37 H 1.09001 * 109.47103 * 299.99900 * 11 9 8 38 38 H 1.08999 * 109.47147 * 60.00424 * 11 9 8 39 39 H 1.08992 * 109.47811 * 300.00447 * 12 11 9 40 40 H 1.09009 * 109.47273 * 60.00437 * 12 11 9 41 41 H 1.09004 * 109.47265 * 300.00571 * 13 12 11 42 42 H 1.09007 * 109.47122 * 60.00169 * 13 12 11 43 43 H 0.97004 * 119.99766 * 180.02562 * 17 16 14 44 44 H 1.08995 * 109.58986 * 66.17814 * 22 8 7 45 45 H 1.09003 * 109.58612 * 186.60908 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5324 2.1643 -1.2498 5 6 3.5712 1.4430 0.0036 6 6 4.0817 2.8853 -0.0291 7 6 3.5946 3.6243 1.2212 8 7 2.1324 3.5042 1.3020 9 6 1.3588 4.6014 1.4205 10 8 0.1530 4.4889 1.4858 11 6 1.9920 5.9679 1.4718 12 6 0.9002 7.0312 1.6066 13 6 1.5430 8.4185 1.6594 14 6 0.4677 9.4658 1.7928 15 1 -0.5705 9.1714 1.8353 16 6 0.8091 10.8000 1.8597 17 7 2.0734 11.1586 1.8074 18 14 -0.5239 12.0982 2.0243 19 1 -0.7937 12.3510 3.4626 20 1 -0.0726 13.3560 1.3768 21 1 -1.7652 11.6195 1.3646 22 6 1.5298 2.1652 1.2506 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.8966 3.1917 -1.2492 29 1 1.8957 1.6497 -2.1394 30 1 0.4424 2.1661 -1.2509 31 1 3.9373 0.9081 -0.8727 32 1 3.9320 0.9503 0.9065 33 1 3.7008 3.3860 -0.9192 34 1 5.1715 2.8850 -0.0500 35 1 4.0472 3.1803 2.1078 36 1 3.8739 4.6759 1.1561 37 1 2.6634 6.0253 2.3286 38 1 2.5564 6.1415 0.5557 39 1 0.2291 6.9737 0.7497 40 1 0.3353 6.8579 2.5227 41 1 2.2139 8.4758 2.5167 42 1 2.1082 8.5922 0.7436 43 1 2.3137 12.0972 1.8548 44 1 1.8141 1.6022 2.1395 45 1 0.4444 2.2545 1.2037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594310713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:12 Heat of formation + Delta-G solvation = -91.666524 kcal Electronic energy + Delta-G solvation = -21137.061399 eV Core-core repulsion = 18152.215855 eV Total energy + Delta-G solvation = -2984.845544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54069 -39.36199 -36.16103 -35.97369 -34.01319 -33.22454 -30.78805 -29.82531 -28.09439 -26.81790 -25.27017 -24.99313 -22.47313 -22.09847 -20.26750 -19.24436 -18.51136 -18.00539 -16.85373 -16.83245 -16.47241 -15.99863 -15.73838 -15.22017 -14.91331 -14.65512 -14.42449 -14.27315 -14.08972 -13.87767 -13.67190 -13.22277 -13.10392 -13.02567 -12.65794 -12.63786 -12.47963 -12.39780 -12.23350 -12.01589 -11.83240 -11.58077 -11.48451 -11.45531 -11.30337 -11.19134 -11.10753 -10.64449 -10.54885 -9.56492 -8.20829 -6.30844 1.39054 1.40290 1.51918 1.63879 2.04753 2.41374 3.11968 3.53901 3.74771 3.82764 3.88202 4.10238 4.15833 4.21676 4.24344 4.31489 4.39019 4.49628 4.57416 4.70831 4.73158 4.79342 4.82058 4.83493 4.94036 4.94616 5.01053 5.06848 5.09418 5.13213 5.17272 5.18976 5.20973 5.29509 5.36052 5.44570 5.52229 5.57726 5.67988 5.73818 5.85325 6.26338 6.41570 6.84041 7.21097 7.37719 8.90738 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.003524 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.174653 B = 7944.349423 C = 8398.121574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.104 4.104 3 C -0.071 4.071 4 C -0.139 4.139 5 C -0.104 4.104 6 C -0.136 4.136 7 C 0.096 3.904 8 N -0.608 5.608 9 C 0.513 3.487 10 O -0.587 6.587 11 C -0.127 4.127 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.549 4.549 15 H 0.050 0.950 16 C 0.004 3.996 17 N -0.928 5.928 18 Si 0.962 3.038 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.269 1.269 22 C 0.116 3.884 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.265 0.735 44 H 0.076 0.924 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.777 -24.476 -4.289 25.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.141 4.141 3 C -0.071 4.071 4 C -0.197 4.197 5 C -0.141 4.141 6 C -0.173 4.173 7 C -0.026 4.026 8 N -0.340 5.340 9 C 0.303 3.697 10 O -0.467 6.467 11 C -0.167 4.167 12 C -0.119 4.119 13 C -0.009 4.009 14 C -0.587 4.587 15 H 0.068 0.932 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.786 3.214 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.006 4.006 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.271 -24.394 -4.250 25.544 hybrid contribution -0.814 1.103 0.122 1.377 sum 5.457 -23.291 -4.128 24.275 Atomic orbital electron populations 1.21903 0.96577 1.01860 1.01384 1.21494 0.95342 0.94111 1.03188 1.20930 0.96728 0.95594 0.93884 1.21891 1.00258 0.99894 0.97623 1.21584 0.92705 0.96454 1.03377 1.21978 1.02071 0.96104 0.97192 1.22055 0.77825 1.02868 0.99807 1.48193 1.08057 1.05741 1.72035 1.21070 0.86656 0.87241 0.74739 1.90635 1.16582 1.87449 1.52070 1.21678 0.99687 0.90245 1.05080 1.21159 0.96657 0.94084 1.00033 1.19002 0.95143 0.91271 0.95500 1.21683 0.93892 0.92698 1.50396 0.93186 1.25905 0.97862 1.00955 0.94703 1.70068 1.17889 1.17510 1.51388 0.85495 0.79124 0.78117 0.78615 1.19661 1.20185 1.19351 1.21790 0.98573 0.81947 0.98339 0.91667 0.93758 0.93233 0.90405 0.90709 0.94019 0.91298 0.94045 0.90276 0.90517 0.92166 0.88387 0.89491 0.89121 0.87642 0.87836 0.94361 0.94241 0.98022 0.98075 0.92620 0.90599 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.22 71.98 0.66 -1.87 16 2 C -0.10 -1.36 4.99 30.59 0.15 -1.21 16 3 C -0.07 -1.16 0.55 -52.08 -0.03 -1.19 16 4 C -0.14 -2.79 7.63 71.98 0.55 -2.24 16 5 C -0.10 -1.27 4.72 30.64 0.14 -1.12 16 6 C -0.14 -1.86 5.74 30.67 0.18 -1.68 16 7 C 0.10 1.68 6.34 86.36 0.55 2.23 16 8 N -0.61 -15.20 2.41 -818.90 -1.97 -17.18 16 9 C 0.51 17.57 7.70 87.66 0.67 18.24 16 10 O -0.59 -25.21 15.39 -3.02 -0.05 -25.26 16 11 C -0.13 -4.39 4.05 29.85 0.12 -4.27 16 12 C -0.08 -3.72 4.44 30.59 0.14 -3.59 16 13 C 0.03 1.51 4.97 29.85 0.15 1.66 16 14 C -0.55 -32.87 9.11 25.60 0.23 -32.64 16 15 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 16 C 0.00 0.22 5.46 84.65 0.46 0.68 16 17 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 18 Si 0.96 45.69 29.54 68.60 2.03 47.72 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 22 C 0.12 2.57 4.58 86.36 0.40 2.97 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.04 0.82 6.56 -2.39 -0.02 0.81 16 25 H 0.05 0.87 6.44 -2.38 -0.02 0.85 16 26 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.04 0.98 5.97 -2.39 -0.01 0.96 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.95 6.44 -2.39 -0.02 0.94 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 1.00 6.33 -2.39 -0.02 0.99 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.09 1.61 5.95 -2.39 -0.01 1.59 16 37 H 0.11 3.24 7.94 -2.39 -0.02 3.22 16 38 H 0.10 3.21 7.69 -2.39 -0.02 3.19 16 39 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 40 H 0.04 1.89 8.10 -2.38 -0.02 1.87 16 41 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 42 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 43 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 1.88 5.62 -2.39 -0.01 1.87 16 Total: -1.00 -72.06 342.20 5.60 -66.45 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.93 Total: 8.77 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 4.38 Total: -24.02 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.69 Total: -73.66 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.05 Total: -25.26 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.06 5.60 -66.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594310713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.212 kcal (2) G-P(sol) polarization free energy of solvation -72.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds