Wall clock time and date at job start Mon Mar 30 2020 07:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46952 * 2 1 4 4 C 1.53006 * 109.47095 * 240.00496 * 2 1 3 5 5 C 1.52997 * 109.47643 * 120.00251 * 2 1 3 6 6 C 1.53782 * 113.61411 * 63.54442 * 5 2 1 7 7 C 1.53776 * 87.17361 * 140.02567 * 6 5 2 8 8 N 1.46507 * 113.61244 * 89.07223 * 7 6 5 9 9 C 1.34776 * 119.99919 * 154.99995 * 8 7 6 10 10 O 1.21284 * 120.00070 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99947 * 180.02562 * 9 8 7 12 12 C 1.53004 * 109.47089 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47226 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.46799 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00480 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99788 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00300 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99881 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47051 * 89.99854 * 18 16 14 20 20 H 1.48496 * 109.47391 * 209.99931 * 18 16 14 21 21 H 1.48500 * 109.47269 * 330.00067 * 18 16 14 22 22 C 1.53779 * 87.08218 * 334.52801 * 7 6 5 23 23 H 1.09002 * 109.46842 * 299.99781 * 1 2 3 24 24 H 1.08993 * 109.47130 * 59.99817 * 1 2 3 25 25 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46932 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46938 * 299.99858 * 3 2 1 28 28 H 1.08994 * 109.47001 * 60.00153 * 3 2 1 29 29 H 1.09004 * 109.46549 * 293.51294 * 4 2 1 30 30 H 1.09000 * 109.46987 * 53.51023 * 4 2 1 31 31 H 1.09002 * 109.47099 * 173.51364 * 4 2 1 32 32 H 1.09001 * 112.90412 * 292.29822 * 5 2 1 33 33 H 1.09005 * 113.61349 * 25.43564 * 6 5 2 34 34 H 1.09004 * 113.61695 * 254.61914 * 6 5 2 35 35 H 1.08993 * 113.61376 * 219.97651 * 7 6 5 36 36 H 0.96997 * 120.00041 * 335.00405 * 8 7 6 37 37 H 1.08998 * 109.47343 * 300.00048 * 11 9 8 38 38 H 1.09004 * 109.46722 * 60.00597 * 11 9 8 39 39 H 1.08998 * 109.47140 * 300.00262 * 12 11 9 40 40 H 1.09003 * 109.46689 * 60.00173 * 12 11 9 41 41 H 1.09004 * 109.46823 * 300.00422 * 13 12 11 42 42 H 1.08994 * 109.47095 * 59.99791 * 13 12 11 43 43 H 0.96997 * 119.99961 * 180.02562 * 17 16 14 44 44 H 1.09004 * 113.61603 * 139.97825 * 22 7 6 45 45 H 1.08999 * 113.61472 * 270.79673 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2491 6 6 1.6537 -2.2088 1.3025 7 6 3.0632 -2.4767 1.8559 8 7 3.1459 -2.3934 3.3163 9 6 4.1116 -3.0634 3.9759 10 8 4.9123 -3.7350 3.3605 11 6 4.1963 -2.9782 5.4781 12 6 5.3712 -3.8251 5.9715 13 6 5.4568 -3.7391 7.4967 14 6 6.6144 -4.5727 7.9825 15 1 7.2279 -5.1098 7.2743 16 6 6.8909 -4.6489 9.3311 17 7 7.9014 -5.3760 9.7552 18 14 5.8310 -3.7183 10.5559 19 1 4.7037 -4.5815 10.9912 20 1 6.6512 -3.3430 11.7355 21 1 5.2954 -2.4907 9.9146 22 6 3.5038 -1.1892 1.1397 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.7745 -1.7769 -1.1932 30 1 1.5850 -0.2787 -2.1355 31 1 3.1238 -0.6217 -1.3093 32 1 1.8224 -0.1803 2.1700 33 1 1.4788 -2.6500 0.3212 34 1 0.8567 -2.4277 2.0132 35 1 3.5252 -3.3790 1.4556 36 1 2.5057 -1.8561 3.8085 37 1 4.3460 -1.9403 5.7753 38 1 3.2705 -3.3517 5.9159 39 1 5.2210 -4.8630 5.6743 40 1 6.2970 -3.4520 5.5336 41 1 5.6067 -2.7012 7.7942 42 1 4.5309 -4.1123 7.9342 43 1 8.0957 -5.4299 10.7040 44 1 4.2004 -0.5835 1.7193 45 1 3.8360 -1.3518 0.1144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594367065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:30 Heat of formation + Delta-G solvation = -51.471717 kcal Electronic energy + Delta-G solvation = -20270.447612 eV Core-core repulsion = 17287.345046 eV Total energy + Delta-G solvation = -2983.102566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.70564 -38.93715 -35.76936 -34.25166 -32.69120 -31.93765 -28.43353 -27.91911 -27.66599 -25.55590 -25.29628 -23.57630 -20.83598 -20.30475 -19.79275 -18.35677 -17.00468 -16.53949 -16.01206 -15.67687 -15.34482 -14.99809 -14.59686 -14.22507 -13.83214 -13.57048 -13.27687 -13.17489 -12.86381 -12.60543 -12.52840 -12.16472 -12.09339 -11.90548 -11.87527 -11.55860 -11.41060 -11.22914 -10.95535 -10.76629 -10.71412 -10.42702 -10.16969 -9.97117 -9.81882 -9.67539 -9.39038 -9.10922 -8.97955 -8.49245 -5.98904 -3.96530 2.87589 3.22966 3.32839 3.39887 3.42916 4.20749 4.26396 4.37641 4.48712 4.60402 4.69657 4.88892 4.91541 5.07236 5.15010 5.28530 5.32178 5.34386 5.37618 5.45120 5.51116 5.57685 5.58094 5.62113 5.62755 5.68451 5.74901 5.78480 5.83255 5.93442 5.98368 6.04570 6.13276 6.17275 6.59012 6.59815 6.72347 6.95012 7.40241 7.48215 7.59709 7.84830 8.44095 8.61438 9.08046 9.63178 11.14834 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042093 B = 0.002843 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.035926 B = 9844.838034 C =10121.494173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 C -0.140 4.140 4 C -0.147 4.147 5 C -0.099 4.099 6 C -0.144 4.144 7 C 0.120 3.880 8 N -0.722 5.722 9 C 0.514 3.486 10 O -0.534 6.534 11 C -0.141 4.141 12 C -0.087 4.087 13 C -0.014 4.014 14 C -0.518 4.518 15 H 0.073 0.927 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.152 4.152 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.398 0.602 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.015 0.985 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.068 0.932 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.655 13.440 -20.577 30.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.059 4.059 3 C -0.198 4.198 4 C -0.204 4.204 5 C -0.117 4.117 6 C -0.182 4.182 7 C 0.014 3.986 8 N -0.374 5.374 9 C 0.302 3.698 10 O -0.409 6.409 11 C -0.181 4.181 12 C -0.125 4.125 13 C -0.052 4.052 14 C -0.556 4.556 15 H 0.091 0.909 16 C -0.137 4.137 17 N -0.544 5.544 18 Si 0.709 3.291 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.191 4.191 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.232 0.768 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.956 12.878 -20.852 29.802 hybrid contribution -0.845 0.777 1.017 1.534 sum -17.801 13.656 -19.835 29.946 Atomic orbital electron populations 1.21840 0.94627 1.01776 1.01485 1.20428 0.95362 0.95333 0.94815 1.21842 1.01175 0.95289 1.01466 1.22031 1.01238 1.00469 0.96681 1.22674 0.96237 0.94961 0.97844 1.23434 0.96618 0.96306 1.01861 1.21730 0.96810 0.99132 0.80891 1.45820 1.33628 1.51690 1.06307 1.21184 0.79708 0.77955 0.90927 1.90689 1.40276 1.40155 1.69823 1.21872 1.02956 1.03341 0.89975 1.21264 0.95033 0.98659 0.97576 1.19607 0.97116 0.96937 0.91522 1.21172 1.12729 1.28735 0.93003 0.90933 1.25059 0.95075 0.95099 0.98454 1.69924 1.28975 1.40568 1.14936 0.86755 0.80571 0.80941 0.80842 1.20360 1.21465 1.19049 1.23639 0.96334 0.97593 1.01513 0.92791 0.92914 0.92555 0.92557 0.92901 0.92791 0.92236 0.92896 0.92187 0.89452 0.88710 0.91123 0.88303 0.76776 0.89409 0.89398 0.92108 0.92090 0.96690 0.97112 0.92808 0.91272 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.31 37.16 0.31 -0.51 16 2 C -0.06 -0.37 0.68 -154.50 -0.11 -0.48 16 3 C -0.14 -0.89 8.43 37.16 0.31 -0.58 16 4 C -0.15 -0.91 7.48 37.16 0.28 -0.63 16 5 C -0.10 -0.70 2.92 -89.67 -0.26 -0.96 16 6 C -0.14 -1.07 6.39 -25.92 -0.17 -1.24 16 7 C 0.12 1.24 4.32 -67.12 -0.29 0.95 16 8 N -0.72 -8.14 5.26 -53.02 -0.28 -8.42 16 9 C 0.51 8.03 7.83 -10.99 -0.09 7.94 16 10 O -0.53 -10.64 15.58 5.55 0.09 -10.56 16 11 C -0.14 -2.21 5.70 -27.88 -0.16 -2.37 16 12 C -0.09 -1.84 4.44 -26.73 -0.12 -1.95 16 13 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 14 C -0.52 -15.30 9.66 -34.44 -0.33 -15.63 16 15 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -28.58 13.96 55.43 0.77 -27.81 16 18 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 22 C -0.15 -1.35 7.11 -25.78 -0.18 -1.54 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.33 7.56 -51.93 -0.39 -0.07 16 26 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.36 6.06 -51.93 -0.31 0.04 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.39 6.47 -51.93 -0.34 0.05 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.64 6.10 -51.93 -0.32 0.32 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 1.24 7.47 -51.93 -0.39 0.85 16 36 H 0.40 3.39 8.70 -40.82 -0.36 3.04 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 40 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 41 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 42 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.77 5.71 -51.93 -0.30 0.48 16 LS Contribution 350.69 15.07 5.28 5.28 Total: -1.00 -33.56 350.69 -8.06 -41.62 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -8.24 Total: -1.71 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -1.01 Total: -15.65 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.49 Total: -36.23 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.56 -8.06 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594367065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.853 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds