Wall clock time and date at job start Mon Mar 30 2020 07:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46952 * 2 1 4 4 C 1.53006 * 109.47095 * 240.00496 * 2 1 3 5 5 C 1.52997 * 109.47643 * 120.00251 * 2 1 3 6 6 C 1.53782 * 113.61411 * 63.54442 * 5 2 1 7 7 C 1.53776 * 87.17361 * 140.02567 * 6 5 2 8 8 N 1.46507 * 113.61244 * 89.07223 * 7 6 5 9 9 C 1.34776 * 119.99919 * 154.99995 * 8 7 6 10 10 O 1.21284 * 120.00070 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99947 * 180.02562 * 9 8 7 12 12 C 1.53004 * 109.47089 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47226 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.46799 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00480 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99788 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00300 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99881 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47051 * 89.99854 * 18 16 14 20 20 H 1.48496 * 109.47391 * 209.99931 * 18 16 14 21 21 H 1.48500 * 109.47269 * 330.00067 * 18 16 14 22 22 C 1.53779 * 87.08218 * 334.52801 * 7 6 5 23 23 H 1.09002 * 109.46842 * 299.99781 * 1 2 3 24 24 H 1.08993 * 109.47130 * 59.99817 * 1 2 3 25 25 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46932 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46938 * 299.99858 * 3 2 1 28 28 H 1.08994 * 109.47001 * 60.00153 * 3 2 1 29 29 H 1.09004 * 109.46549 * 293.51294 * 4 2 1 30 30 H 1.09000 * 109.46987 * 53.51023 * 4 2 1 31 31 H 1.09002 * 109.47099 * 173.51364 * 4 2 1 32 32 H 1.09001 * 112.90412 * 292.29822 * 5 2 1 33 33 H 1.09005 * 113.61349 * 25.43564 * 6 5 2 34 34 H 1.09004 * 113.61695 * 254.61914 * 6 5 2 35 35 H 1.08993 * 113.61376 * 219.97651 * 7 6 5 36 36 H 0.96997 * 120.00041 * 335.00405 * 8 7 6 37 37 H 1.08998 * 109.47343 * 300.00048 * 11 9 8 38 38 H 1.09004 * 109.46722 * 60.00597 * 11 9 8 39 39 H 1.08998 * 109.47140 * 300.00262 * 12 11 9 40 40 H 1.09003 * 109.46689 * 60.00173 * 12 11 9 41 41 H 1.09004 * 109.46823 * 300.00422 * 13 12 11 42 42 H 1.08994 * 109.47095 * 59.99791 * 13 12 11 43 43 H 0.96997 * 119.99961 * 180.02562 * 17 16 14 44 44 H 1.09004 * 113.61603 * 139.97825 * 22 7 6 45 45 H 1.08999 * 113.61472 * 270.79673 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2491 6 6 1.6537 -2.2088 1.3025 7 6 3.0632 -2.4767 1.8559 8 7 3.1459 -2.3934 3.3163 9 6 4.1116 -3.0634 3.9759 10 8 4.9123 -3.7350 3.3605 11 6 4.1963 -2.9782 5.4781 12 6 5.3712 -3.8251 5.9715 13 6 5.4568 -3.7391 7.4967 14 6 6.6144 -4.5727 7.9825 15 1 7.2279 -5.1098 7.2743 16 6 6.8909 -4.6489 9.3311 17 7 7.9014 -5.3760 9.7552 18 14 5.8310 -3.7183 10.5559 19 1 4.7037 -4.5815 10.9912 20 1 6.6512 -3.3430 11.7355 21 1 5.2954 -2.4907 9.9146 22 6 3.5038 -1.1892 1.1397 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.7745 -1.7769 -1.1932 30 1 1.5850 -0.2787 -2.1355 31 1 3.1238 -0.6217 -1.3093 32 1 1.8224 -0.1803 2.1700 33 1 1.4788 -2.6500 0.3212 34 1 0.8567 -2.4277 2.0132 35 1 3.5252 -3.3790 1.4556 36 1 2.5057 -1.8561 3.8085 37 1 4.3460 -1.9403 5.7753 38 1 3.2705 -3.3517 5.9159 39 1 5.2210 -4.8630 5.6743 40 1 6.2970 -3.4520 5.5336 41 1 5.6067 -2.7012 7.7942 42 1 4.5309 -4.1123 7.9342 43 1 8.0957 -5.4299 10.7040 44 1 4.2004 -0.5835 1.7193 45 1 3.8360 -1.3518 0.1144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594367065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:29 Heat of formation + Delta-G solvation = -72.761765 kcal Electronic energy + Delta-G solvation = -20271.370818 eV Core-core repulsion = 17287.345046 eV Total energy + Delta-G solvation = -2984.025772 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.52481 -40.01954 -36.56642 -36.05471 -34.18386 -33.51306 -30.17657 -28.40444 -28.15486 -26.41399 -26.17924 -25.06382 -22.35070 -21.31382 -21.07628 -19.00294 -18.92636 -17.94419 -16.91420 -16.74168 -16.34971 -16.19316 -15.69793 -15.28749 -14.89976 -14.86493 -14.69812 -14.19697 -13.84568 -13.74138 -13.50755 -13.26095 -13.07541 -12.72606 -12.69970 -12.62147 -12.46997 -12.35626 -11.97367 -11.80813 -11.78482 -11.72656 -11.49363 -11.32746 -11.26984 -11.04613 -10.83905 -10.74796 -10.74118 -9.97248 -8.27436 -6.33178 1.38773 1.42531 1.54648 1.66591 2.21462 2.39543 3.07576 3.58599 3.61945 3.81044 3.87955 3.96006 4.12745 4.16946 4.26632 4.32878 4.34080 4.60441 4.72155 4.78288 4.82602 4.83756 4.88034 4.92388 4.93178 4.97832 5.02187 5.04493 5.05096 5.09021 5.17905 5.22903 5.27146 5.32095 5.45074 5.53251 5.56888 5.58173 5.60647 5.68563 5.76238 6.31163 6.60735 6.75638 7.30804 7.33066 8.90314 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042093 B = 0.002843 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.035926 B = 9844.838034 C =10121.494173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.148 4.148 5 C -0.087 4.087 6 C -0.129 4.129 7 C 0.104 3.896 8 N -0.700 5.700 9 C 0.513 3.487 10 O -0.589 6.589 11 C -0.131 4.131 12 C -0.081 4.081 13 C -0.009 4.009 14 C -0.541 4.541 15 H 0.018 0.982 16 C -0.004 4.004 17 N -0.957 5.957 18 Si 0.963 3.037 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.235 1.235 22 C -0.151 4.151 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.416 0.584 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.035 0.965 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.266 0.734 44 H 0.055 0.945 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.192 15.960 -20.218 33.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.057 4.057 3 C -0.198 4.198 4 C -0.205 4.205 5 C -0.105 4.105 6 C -0.167 4.167 7 C -0.001 4.001 8 N -0.352 5.352 9 C 0.302 3.698 10 O -0.469 6.469 11 C -0.170 4.170 12 C -0.119 4.119 13 C -0.046 4.046 14 C -0.579 4.579 15 H 0.037 0.963 16 C -0.200 4.200 17 N -0.598 5.598 18 Si 0.785 3.215 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.158 1.158 22 C -0.189 4.189 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.546 15.437 -20.525 32.889 hybrid contribution 0.351 -0.073 0.806 0.882 sum -20.195 15.364 -19.719 32.136 Atomic orbital electron populations 1.21823 0.93860 1.02042 1.01833 1.20412 0.95887 0.95142 0.94286 1.21842 1.00698 0.95392 1.01843 1.22041 1.00920 1.00627 0.96955 1.22617 0.94367 0.94901 0.98636 1.23376 0.94714 0.96289 1.02281 1.21902 0.99272 0.98755 0.80193 1.45580 1.32425 1.50312 1.06878 1.21193 0.79841 0.77740 0.91055 1.90682 1.42653 1.42838 1.70745 1.21723 1.01492 1.03820 0.89976 1.21044 0.96661 0.98428 0.95811 1.19545 0.95344 0.96461 0.93265 1.21569 1.14176 1.29403 0.92730 0.96329 1.26220 0.96684 0.96144 1.00967 1.70109 1.31370 1.42586 1.15754 0.85476 0.78424 0.80312 0.77284 1.18858 1.21231 1.15828 1.23629 0.97492 0.96519 1.01262 0.92524 0.92559 0.92318 0.93315 0.92422 0.92563 0.92083 0.92363 0.92775 0.88756 0.87828 0.89997 0.91064 0.74622 0.86532 0.86360 0.94591 0.94674 0.95117 0.95184 0.92500 0.92623 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.31 71.98 0.60 -0.63 16 2 C -0.06 -0.59 0.68 -52.18 -0.04 -0.62 16 3 C -0.14 -1.50 8.43 71.98 0.61 -0.90 16 4 C -0.15 -1.56 7.48 71.98 0.54 -1.03 16 5 C -0.09 -1.02 2.92 -10.18 -0.03 -1.05 16 6 C -0.13 -1.60 6.39 31.12 0.20 -1.40 16 7 C 0.10 2.05 4.32 45.51 0.20 2.25 16 8 N -0.70 -14.42 5.26 -440.04 -2.32 -16.74 16 9 C 0.51 15.58 7.83 87.66 0.69 16.26 16 10 O -0.59 -24.24 15.58 -3.04 -0.05 -24.29 16 11 C -0.13 -3.76 5.70 29.85 0.17 -3.59 16 12 C -0.08 -3.44 4.44 30.60 0.14 -3.30 16 13 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 14 C -0.54 -32.88 9.66 25.60 0.25 -32.63 16 15 H 0.02 1.27 7.99 -2.91 -0.02 1.24 16 16 C 0.00 -0.26 5.47 84.66 0.46 0.20 16 17 N -0.96 -62.31 13.96 21.45 0.30 -62.01 16 18 Si 0.96 44.15 27.47 68.60 1.88 46.03 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 22 C -0.15 -2.52 7.11 31.21 0.22 -2.30 16 23 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.06 0.50 7.56 -2.39 -0.02 0.48 16 26 H 0.05 0.59 8.12 -2.38 -0.02 0.57 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.62 6.06 -2.38 -0.01 0.61 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.63 6.47 -2.39 -0.02 0.62 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.15 6.10 -2.38 -0.01 1.14 16 34 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 1.83 7.47 -2.39 -0.02 1.81 16 36 H 0.42 5.62 8.70 -92.71 -0.81 4.81 16 37 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 39 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 40 H 0.03 1.62 8.10 -2.39 -0.02 1.60 16 41 H 0.03 1.36 7.20 -2.38 -0.02 1.34 16 42 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 43 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 44 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.10 1.55 5.71 -2.39 -0.01 1.54 16 Total: -1.00 -77.13 350.69 4.02 -73.10 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.08 Total: 12.93 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 4.12 Total: -29.03 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -2.02 Total: -78.75 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Total: -77.13 4.02 -73.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594367065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.343 kcal (2) G-P(sol) polarization free energy of solvation -77.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds