Wall clock time and date at job start Mon Mar 30 2020 07:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 C 1.50701 * 109.47212 * 300.00129 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 14 14 N 1.46901 * 109.47859 * 59.99693 * 13 2 1 15 15 C 1.46890 * 111.00688 * 180.02562 * 14 13 2 16 16 H 1.09009 * 110.73448 * 34.29739 * 15 14 13 17 17 C 1.54459 * 110.82807 * 270.87891 * 15 14 13 18 18 O 1.43493 * 107.57582 * 220.41301 * 17 15 14 19 19 C 1.42646 * 109.67380 * 359.26530 * 18 17 15 20 20 C 1.52876 * 116.02378 * 253.83202 * 19 18 17 21 21 C 1.53943 * 86.80988 * 216.90133 * 20 19 18 22 22 C 1.52871 * 116.05118 * 152.55088 * 19 18 17 23 23 C 1.54347 * 106.47715 * 23.02289 * 19 18 17 24 24 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 29 29 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 32 32 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47103 * 179.97438 * 13 2 1 34 34 H 1.09001 * 109.47066 * 299.99881 * 13 2 1 35 35 H 1.00909 * 110.99304 * 303.95833 * 14 13 2 36 36 H 1.08993 * 109.83070 * 339.92712 * 17 15 14 37 37 H 1.09001 * 109.82965 * 100.90585 * 17 15 14 38 38 H 1.08998 * 113.65734 * 331.38172 * 20 19 18 39 39 H 1.09000 * 113.65689 * 102.42001 * 20 19 18 40 40 H 1.09003 * 113.58980 * 270.16693 * 21 20 19 41 41 H 1.09000 * 113.65864 * 139.36117 * 21 20 19 42 42 H 1.09000 * 113.65372 * 257.55770 * 22 19 18 43 43 H 1.08995 * 113.65414 * 28.50102 * 22 19 18 44 44 H 1.09004 * 111.33121 * 207.08328 * 23 19 18 45 45 H 1.09006 * 111.08546 * 82.77259 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8704 -0.4822 3.7320 8 7 2.6265 -1.5515 3.8526 9 14 1.2471 0.3979 5.2571 10 1 0.4217 1.5644 4.8530 11 1 0.4219 -0.5358 6.0650 12 1 2.4018 0.8645 6.0660 13 6 2.0401 -0.7211 -1.2492 14 7 1.5504 -0.0287 -2.4487 15 6 2.0209 -0.6950 -3.6703 16 1 2.0797 -1.7736 -3.5234 17 6 3.3863 -0.1262 -4.1151 18 8 3.3615 -0.0080 -5.5449 19 6 2.1066 -0.4683 -6.0431 20 6 2.1207 -1.8270 -6.7438 21 6 1.0780 -1.2415 -7.7132 22 6 1.6415 0.1476 -7.3627 23 6 1.1028 -0.3507 -4.8766 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2492 32 1 2.8608 -1.8829 4.7336 33 1 3.1301 -0.7207 -1.2494 34 1 1.6767 -1.7488 -1.2493 35 1 0.5438 0.0414 -2.4401 36 1 3.5425 0.8544 -3.6656 37 1 4.1851 -0.8039 -3.8139 38 1 3.0731 -2.0650 -7.2173 39 1 1.7372 -2.6406 -6.1281 40 1 0.0483 -1.3894 -7.3877 41 1 1.2382 -1.5275 -8.7528 42 1 0.8748 0.9129 -7.2419 43 1 2.4593 0.4654 -8.0093 44 1 0.2942 -1.0750 -4.9748 45 1 0.7119 0.6637 -4.7964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594973809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:24 Heat of formation + Delta-G solvation = -42.358926 kcal Electronic energy + Delta-G solvation = -21077.089416 eV Core-core repulsion = 18094.382010 eV Total energy + Delta-G solvation = -2982.707406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.64196 -37.76244 -36.40214 -34.31179 -32.28495 -29.84003 -27.47002 -26.82492 -26.35261 -25.97990 -25.08344 -23.20661 -22.48773 -20.82894 -19.02091 -17.93442 -16.67952 -16.27543 -16.18162 -15.65421 -15.11481 -14.59953 -14.51663 -13.99710 -13.79659 -13.33439 -13.14174 -12.73115 -12.53942 -12.35186 -12.05312 -11.99833 -11.81468 -11.52951 -11.32475 -11.12011 -10.99863 -10.90046 -10.80691 -10.73269 -10.52084 -10.46691 -10.26378 -10.10493 -9.71185 -9.41807 -9.04009 -8.83483 -8.32958 -8.22462 -5.97221 -3.97344 3.31831 3.39794 3.43157 3.69856 4.17727 4.26981 4.33198 4.47147 4.50616 4.61696 4.83139 4.97461 5.11090 5.28294 5.38771 5.44356 5.51838 5.57185 5.61675 5.63616 5.65170 5.73158 5.77499 5.85243 5.94313 5.96802 6.04432 6.11511 6.22403 6.31143 6.47471 6.63818 6.76402 6.81155 7.05434 7.17961 7.18913 7.24414 7.34603 7.58082 7.69304 7.83768 8.03025 8.47234 9.08258 9.65638 11.14504 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.048678 B = 0.003344 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.071026 B = 8370.882833 C = 8441.367137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.068 3.932 14 N -0.674 5.674 15 C 0.054 3.946 16 H 0.057 0.943 17 C 0.059 3.941 18 O -0.367 6.367 19 C 0.087 3.913 20 C -0.152 4.152 21 C -0.139 4.139 22 C -0.129 4.129 23 C -0.132 4.132 24 H 0.065 0.935 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.258 0.742 33 H 0.067 0.933 34 H 0.025 0.975 35 H 0.343 0.657 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 0.976 -20.718 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.174 4.174 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.060 4.060 14 N -0.307 5.307 15 C -0.056 4.056 16 H 0.075 0.925 17 C -0.018 4.018 18 O -0.286 6.286 19 C 0.047 3.953 20 C -0.189 4.189 21 C -0.177 4.177 22 C -0.166 4.166 23 C -0.170 4.170 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.163 0.837 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.603 1.406 -20.705 20.916 hybrid contribution -0.888 -0.634 1.205 1.626 sum -3.491 0.772 -19.500 19.825 Atomic orbital electron populations 1.21771 0.96061 1.00352 1.00453 1.20637 0.94746 0.96185 0.94341 1.21604 0.99817 0.95731 1.00213 1.19127 0.96142 0.94957 0.90171 1.21273 1.30723 1.11887 0.90584 0.92222 1.25020 0.95414 0.95115 0.99085 1.69976 1.37331 1.23235 1.23196 0.86607 0.78622 0.79719 0.83484 1.19765 1.21203 1.21137 1.22202 0.99885 0.94696 0.89232 1.60582 1.16486 1.53133 1.00538 1.23052 0.94917 0.96881 0.90772 0.92490 1.23244 0.96461 1.01935 0.80207 1.88299 1.34654 1.85054 1.20594 1.23029 0.84312 0.94772 0.93231 1.23367 1.00000 0.97127 0.98435 1.22727 0.98761 0.96439 0.99770 1.23052 1.00583 0.97161 0.95845 1.23110 0.97441 1.03456 0.92976 0.91632 0.94843 0.94109 0.94139 0.93891 0.92642 0.96658 0.96938 0.93212 0.91474 0.95684 0.83717 0.89793 0.91734 0.89358 0.91189 0.89993 0.90882 0.90803 0.89306 0.90040 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 7.89 37.16 0.29 -2.04 16 2 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 3 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.77 7.65 -34.44 -0.26 -14.03 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 13 C 0.07 1.15 4.52 -3.83 -0.02 1.13 16 14 N -0.67 -9.40 5.52 -104.55 -0.58 -9.98 16 15 C 0.05 0.67 3.30 -65.64 -0.22 0.46 16 16 H 0.06 0.72 7.86 -51.92 -0.41 0.32 16 17 C 0.06 0.77 7.56 37.92 0.29 1.06 16 18 O -0.37 -4.96 11.16 -35.23 -0.39 -5.35 16 19 C 0.09 0.93 1.45 -90.05 -0.13 0.80 16 20 C -0.15 -1.40 7.58 -26.30 -0.20 -1.60 16 21 C -0.14 -1.06 7.90 -25.76 -0.20 -1.26 16 22 C -0.13 -1.15 7.64 -26.31 -0.20 -1.35 16 23 C -0.13 -1.37 5.65 -24.72 -0.14 -1.51 16 24 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 25 H 0.03 0.51 6.57 -51.93 -0.34 0.16 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 29 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.34 4.51 6.51 -39.29 -0.26 4.26 16 36 H 0.08 1.18 8.02 -51.93 -0.42 0.77 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -29.19 345.84 -9.11 -38.30 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.27 Total: 0.72 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -0.80 Total: -19.36 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.16 Total: -36.03 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.39 Total: -5.35 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.19 -9.11 -38.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594973809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.061 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds