Wall clock time and date at job start Mon Mar 30 2020 07:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53011 * 109.47074 * 2 1 4 4 C 1.53002 * 109.47410 * 240.00482 * 2 1 3 5 5 C 1.50696 * 109.47224 * 59.99540 * 4 2 1 6 6 H 1.08000 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00092 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00403 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00035 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47282 * 90.00004 * 9 7 5 11 11 H 1.48504 * 109.47368 * 209.99691 * 9 7 5 12 12 H 1.48498 * 109.47293 * 330.00102 * 9 7 5 13 13 C 1.52995 * 109.47486 * 119.99857 * 2 1 3 14 14 N 1.46900 * 109.47244 * 300.00503 * 13 2 1 15 15 C 1.46900 * 111.00151 * 179.97438 * 14 13 2 16 16 H 1.09001 * 112.88517 * 336.34071 * 15 14 13 17 17 C 1.53948 * 113.75028 * 107.76733 * 15 14 13 18 18 C 1.53957 * 87.29686 * 139.21638 * 17 15 14 19 19 H 1.08997 * 113.66354 * 220.80031 * 18 17 15 20 20 O 1.42896 * 113.66117 * 89.73605 * 18 17 15 21 21 C 1.52909 * 113.66114 * 205.00021 * 15 14 13 22 22 C 1.52910 * 121.13680 * 346.24957 * 21 15 14 23 23 C 1.53949 * 86.78077 * 100.82535 * 22 21 15 24 24 C 1.52905 * 121.13655 * 94.81684 * 21 15 14 25 25 H 1.09001 * 109.47523 * 300.00118 * 1 2 3 26 26 H 1.09002 * 109.47819 * 59.99905 * 1 2 3 27 27 H 1.08999 * 109.47539 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47208 * 300.00460 * 3 2 1 30 30 H 1.09003 * 109.46508 * 60.00355 * 3 2 1 31 31 H 1.08999 * 109.47086 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.46604 * 299.99543 * 4 2 1 33 33 H 0.97001 * 120.00303 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.47490 * 180.02562 * 13 2 1 35 35 H 1.09004 * 109.47062 * 60.00129 * 13 2 1 36 36 H 1.00896 * 111.00251 * 56.04132 * 14 13 2 37 37 H 1.09001 * 113.57503 * 24.61317 * 17 15 14 38 38 H 1.08996 * 113.57974 * 253.82242 * 17 15 14 39 39 H 0.96708 * 113.99487 * 82.81562 * 20 18 17 40 40 H 1.09006 * 113.66074 * 215.29190 * 22 21 15 41 41 H 1.08994 * 113.66448 * 346.35155 * 22 21 15 42 42 H 1.09009 * 113.57633 * 270.12923 * 23 22 21 43 43 H 1.09000 * 113.65567 * 139.34741 * 23 22 21 44 44 H 1.08990 * 113.66878 * 13.64950 * 24 21 15 45 45 H 1.09008 * 113.66523 * 144.70973 * 24 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4820 -3.7319 8 7 1.4323 0.1382 -4.8058 9 14 2.9432 -2.0015 -3.9034 10 1 2.0838 -3.2118 -3.9488 11 1 3.7351 -1.9096 -5.1563 12 1 3.8636 -2.0913 -2.7415 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0209 -0.6952 3.6703 16 1 2.2691 -1.7447 3.5119 17 6 3.1089 0.0900 4.4250 18 6 2.3935 -0.3128 5.7274 19 1 2.3428 0.4885 6.4645 20 8 2.8562 -1.5478 6.2776 21 6 1.1247 -0.4533 4.8854 22 6 0.0574 0.6416 4.8752 23 6 -0.9637 -0.4770 4.5996 24 6 0.0274 -1.4466 5.2688 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 3.1300 -0.7215 -1.2490 32 1 1.6767 -1.7489 -1.2493 33 1 1.6661 -0.1935 -5.6868 34 1 3.1300 -0.7208 1.2494 35 1 1.6767 -1.7489 1.2492 36 1 0.5438 0.0413 2.4402 37 1 3.0877 1.1621 4.2295 38 1 4.1056 -0.3395 4.3243 39 1 3.6585 -1.4646 6.8110 40 1 -0.0781 1.1295 5.8406 41 1 0.1641 1.3489 4.0528 42 1 -1.1181 -0.6748 3.5388 43 1 -1.8983 -0.3611 5.1484 44 1 0.1100 -2.4074 4.7609 45 1 -0.1167 -1.5457 6.3448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594990461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:36 Heat of formation + Delta-G solvation = -38.475270 kcal Electronic energy + Delta-G solvation = -21520.753845 eV Core-core repulsion = 18538.214847 eV Total energy + Delta-G solvation = -2982.538998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76159 -38.95587 -37.24675 -35.57163 -34.41926 -32.78413 -29.57582 -27.93639 -26.99651 -26.64839 -25.58726 -24.69613 -23.23961 -21.71085 -19.79655 -18.90954 -18.82687 -18.00352 -16.99187 -16.67054 -16.42775 -16.05154 -15.63876 -15.27168 -14.99391 -14.68578 -14.35539 -14.11782 -13.72192 -13.38419 -13.29683 -13.15218 -13.05885 -12.83030 -12.76493 -12.63785 -12.41817 -12.22048 -12.13258 -12.06565 -11.74751 -11.43675 -11.31263 -11.23917 -11.06667 -10.91071 -10.70783 -10.60838 -10.43513 -9.27011 -8.22540 -6.22619 1.33958 1.36044 1.47044 2.38368 3.00109 3.12381 3.33895 3.45248 3.64086 3.85974 3.89126 3.97661 4.08782 4.12038 4.22911 4.30169 4.46270 4.53012 4.62001 4.71210 4.78382 4.83893 4.88071 4.89456 5.00701 5.02940 5.07487 5.09135 5.11184 5.17550 5.18706 5.30166 5.36584 5.43381 5.47953 5.52062 5.56249 5.62073 5.75140 5.81152 6.18469 6.41267 6.52808 6.84345 6.94315 7.39895 8.93605 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.004311 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.619905 B = 6493.309433 C = 6814.003713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.048 4.048 3 C -0.107 4.107 4 C -0.003 4.003 5 C -0.503 4.503 6 H 0.046 0.954 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.938 3.062 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.252 1.252 13 C 0.080 3.920 14 N -0.667 5.667 15 C 0.082 3.918 16 H 0.056 0.944 17 C -0.150 4.150 18 C 0.098 3.902 19 H 0.088 0.912 20 O -0.566 6.566 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.142 4.142 24 C -0.120 4.120 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.011 0.989 32 H 0.008 0.992 33 H 0.262 0.738 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.343 0.657 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.396 0.604 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.416 -1.151 25.503 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.048 4.048 3 C -0.165 4.165 4 C -0.041 4.041 5 C -0.541 4.541 6 H 0.064 0.936 7 C -0.193 4.193 8 N -0.595 5.595 9 Si 0.763 3.237 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.176 1.176 13 C -0.050 4.050 14 N -0.299 5.299 15 C -0.028 4.028 16 H 0.074 0.926 17 C -0.189 4.189 18 C 0.038 3.962 19 H 0.106 0.894 20 O -0.374 6.374 21 C -0.102 4.102 22 C -0.141 4.141 23 C -0.180 4.180 24 C -0.158 4.158 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.030 0.970 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.165 0.835 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.246 0.754 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.404 -0.927 25.008 25.028 hybrid contribution 0.447 -1.320 -0.839 1.626 sum 0.851 -2.246 24.169 24.288 Atomic orbital electron populations 1.21689 0.95020 1.00552 1.00845 1.20348 0.95549 0.96048 0.92886 1.21499 0.99415 0.95318 1.00220 1.19597 0.95658 0.95199 0.93658 1.21409 1.30152 1.12138 0.90388 0.93562 1.25881 0.97505 1.00092 0.95780 1.70056 1.48280 1.42742 0.98426 0.85832 0.79773 0.80162 0.77899 1.19650 1.21279 1.17609 1.21902 0.99388 0.94181 0.89486 1.60698 1.16597 1.52351 1.00303 1.22680 0.96560 0.95660 0.87946 0.92588 1.23692 0.97661 1.01385 0.96167 1.22455 0.94203 0.86358 0.93175 0.89418 1.86423 1.48605 1.31240 1.71101 1.22900 0.92569 0.99456 0.95282 1.22579 0.92733 0.95542 1.03280 1.22893 0.97950 0.96507 1.00629 1.22622 0.95433 0.96704 1.01022 0.91606 0.94241 0.93953 0.94439 0.95213 0.91335 0.97040 0.97340 0.92864 0.92039 0.96230 0.83500 0.88594 0.91647 0.75394 0.88070 0.90495 0.91185 0.89974 0.93208 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.52 7.89 71.98 0.57 -3.95 16 2 C -0.05 -1.84 0.60 -52.18 -0.03 -1.87 16 3 C -0.11 -4.09 8.06 71.99 0.58 -3.51 16 4 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 5 C -0.50 -28.58 8.20 25.60 0.21 -28.37 16 6 H 0.05 2.87 5.92 -2.91 -0.02 2.85 16 7 C 0.00 0.19 5.47 84.65 0.46 0.66 16 8 N -0.95 -60.31 13.96 21.44 0.30 -60.01 16 9 Si 0.94 45.42 27.47 68.60 1.88 47.30 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.25 -11.51 6.54 99.48 0.65 -10.86 16 13 C 0.08 2.57 4.49 86.30 0.39 2.96 16 14 N -0.67 -17.55 5.31 -490.07 -2.60 -20.15 16 15 C 0.08 1.92 3.97 45.21 0.18 2.10 16 16 H 0.06 1.54 7.87 -2.39 -0.02 1.52 16 17 C -0.15 -3.00 7.72 31.23 0.24 -2.76 16 18 C 0.10 1.64 5.07 30.89 0.16 1.80 16 19 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 20 O -0.57 -9.77 13.40 -148.98 -2.00 -11.76 16 21 C -0.10 -1.93 0.94 -52.31 -0.05 -1.98 16 22 C -0.10 -1.70 7.23 30.88 0.22 -1.48 16 23 C -0.14 -2.43 7.79 31.23 0.24 -2.18 16 24 C -0.12 -2.28 7.62 30.88 0.24 -2.04 16 25 H 0.07 1.97 6.57 -2.39 -0.02 1.95 16 26 H 0.04 1.67 6.62 -2.39 -0.02 1.66 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.03 1.29 6.62 -2.39 -0.02 1.27 16 30 H 0.07 2.26 7.60 -2.39 -0.02 2.24 16 31 H 0.01 0.54 7.20 -2.39 -0.02 0.53 16 32 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 33 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.02 0.64 8.13 -2.39 -0.02 0.62 16 36 H 0.34 8.68 4.35 -89.70 -0.39 8.29 16 37 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.40 3.27 9.12 -74.05 -0.68 2.59 16 40 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.08 1.40 7.22 -2.39 -0.02 1.38 16 42 H 0.07 1.34 7.30 -2.38 -0.02 1.32 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -66.37 340.89 0.93 -65.44 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.16 Total: 19.86 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 3.50 Total: -40.68 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.30 Total: -80.16 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -2.00 Total: -11.76 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Total: -66.37 0.93 -65.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594990461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.967 kcal (2) G-P(sol) polarization free energy of solvation -66.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds