Wall clock time and date at job start Mon Mar 30 2020 09:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99901 * 2 1 4 4 C 1.52994 * 109.47296 * 125.00452 * 3 2 1 5 5 H 1.08997 * 109.47147 * 305.00465 * 4 3 2 6 6 C 1.53005 * 109.46955 * 64.99977 * 4 3 2 7 7 C 1.53002 * 109.47136 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47112 * 300.00320 * 7 6 4 9 9 C 1.52998 * 109.47391 * 59.99542 * 8 7 6 10 10 C 1.53001 * 109.47198 * 184.99938 * 4 3 2 11 11 H 1.09002 * 109.47163 * 299.99671 * 10 4 3 12 12 N 1.46898 * 109.47291 * 60.00283 * 10 4 3 13 13 C 1.46899 * 111.00062 * 205.00023 * 12 10 4 14 14 C 1.53000 * 109.47282 * 179.97438 * 13 12 10 15 15 O 1.42907 * 109.46664 * 64.99931 * 14 13 12 16 16 C 1.42900 * 113.99743 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47176 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00179 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00472 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47339 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00306 * 21 19 17 24 24 H 1.48504 * 109.46636 * 59.99865 * 21 19 17 25 25 H 1.08001 * 119.99801 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.99948 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00043 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47299 * 5.00224 * 3 2 1 29 29 H 1.09005 * 109.47047 * 245.00617 * 3 2 1 30 30 H 1.08994 * 109.47257 * 60.00470 * 6 4 3 31 31 H 1.09002 * 109.47332 * 299.99884 * 6 4 3 32 32 H 1.08992 * 109.47244 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.46812 * 59.99735 * 7 6 4 34 34 H 1.09005 * 109.46874 * 299.99944 * 8 7 6 35 35 H 1.08994 * 109.47145 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.46981 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.46783 * 60.00346 * 9 8 7 38 38 H 1.00905 * 110.99122 * 328.95188 * 12 10 4 39 39 H 1.08999 * 109.47291 * 59.99811 * 13 12 10 40 40 H 1.09002 * 109.47004 * 299.99856 * 13 12 10 41 41 H 1.09001 * 109.47162 * 305.00450 * 14 13 12 42 42 H 1.09000 * 109.47452 * 184.99804 * 14 13 12 43 43 H 1.09005 * 109.47045 * 60.00483 * 16 15 14 44 44 H 1.08998 * 109.47421 * 300.00108 * 16 15 14 45 45 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1815 5 1 2.4884 1.1468 2.1059 6 6 4.0999 0.2509 0.9918 7 6 5.0712 0.2785 2.1737 8 6 5.7453 1.6500 2.2480 9 6 4.6805 2.7321 2.4376 10 6 3.7092 2.7046 1.2551 11 1 4.2559 2.8908 0.3307 12 7 2.6868 3.7436 1.4372 13 6 3.1597 5.0411 0.9363 14 6 2.0701 6.0952 1.1422 15 8 1.8513 6.2870 2.5414 16 6 0.8473 7.2575 2.8449 17 6 0.7002 7.3774 4.3399 18 1 1.3120 6.7726 4.9929 19 6 -0.2161 8.2583 4.8741 20 7 -0.9614 8.9944 4.0789 21 14 -0.3989 8.4065 6.7272 22 1 -1.4422 9.4150 7.0426 23 1 -0.7941 7.0914 7.2923 24 1 0.8948 8.8312 7.3198 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4027 -0.9315 30 1 4.6466 0.4372 0.0675 31 1 3.6197 -0.7262 0.9394 32 1 5.8295 -0.4927 2.0388 33 1 4.5242 0.0920 3.0979 34 1 6.2923 1.8365 1.3237 35 1 6.4369 1.6697 3.0902 36 1 5.1608 3.7092 2.4900 37 1 4.1336 2.5456 3.3618 38 1 1.8197 3.4792 0.9941 39 1 3.3890 4.9588 -0.1261 40 1 4.0576 5.3351 1.4800 41 1 1.1457 5.7587 0.6727 42 1 2.3850 7.0363 0.6913 43 1 -0.1026 6.9456 2.4107 44 1 1.1373 8.2225 2.4294 45 1 -1.6063 9.6139 4.4547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595603875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:53 Heat of formation + Delta-G solvation = -56.755656 kcal Electronic energy + Delta-G solvation = -20671.218550 eV Core-core repulsion = 17687.886855 eV Total energy + Delta-G solvation = -2983.331695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.51461 -36.82983 -35.08546 -34.70040 -32.61918 -31.13554 -30.19569 -27.67896 -26.45618 -25.70901 -22.66494 -22.20147 -21.34333 -21.10936 -19.81488 -19.60107 -16.40907 -16.00192 -15.70515 -15.60636 -15.09330 -14.68894 -14.41898 -14.17448 -14.05822 -13.73913 -13.47701 -13.12907 -12.78881 -12.61181 -12.44157 -11.96337 -11.73362 -11.66753 -11.32405 -11.28045 -11.06755 -10.98279 -10.79040 -10.71741 -10.58818 -10.45269 -10.20481 -10.01745 -9.86405 -9.39359 -9.03489 -8.73637 -8.10756 -8.05240 -6.04532 -4.05302 2.16529 3.37052 3.39021 3.43655 4.23173 4.40996 4.51792 4.63801 4.71716 4.90123 4.97324 5.03901 5.14956 5.21948 5.31896 5.33887 5.41021 5.43231 5.47050 5.52935 5.61864 5.69228 5.72290 5.76386 5.83376 5.94707 6.01132 6.05945 6.07985 6.13729 6.18300 6.23646 6.30405 6.39784 6.49867 6.51754 6.65826 7.17165 7.32663 7.50522 7.66215 7.87360 8.23926 8.69220 9.09393 9.59314 11.07198 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.003785 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.599212 B = 7395.188096 C = 7813.258177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C -0.096 4.096 4 C -0.084 4.084 5 H 0.082 0.918 6 C -0.110 4.110 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.108 4.108 10 C 0.095 3.905 11 H 0.037 0.963 12 N -0.674 5.674 13 C 0.066 3.934 14 C 0.065 3.935 15 O -0.379 6.379 16 C 0.194 3.806 17 C -0.510 4.510 18 H 0.066 0.934 19 C 0.055 3.945 20 N -0.901 5.901 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.338 0.662 39 H 0.031 0.969 40 H 0.077 0.923 41 H 0.032 0.968 42 H 0.039 0.961 43 H 0.003 0.997 44 H 0.002 0.998 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.823 -17.961 -9.835 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.103 4.103 5 H 0.100 0.900 6 C -0.148 4.148 7 C -0.158 4.158 8 C -0.157 4.157 9 C -0.146 4.146 10 C -0.014 4.014 11 H 0.055 0.945 12 N -0.308 5.308 13 C -0.063 4.063 14 C -0.013 4.013 15 O -0.299 6.299 16 C 0.119 3.881 17 C -0.549 4.549 18 H 0.084 0.916 19 C -0.145 4.145 20 N -0.541 5.541 21 Si 0.735 3.265 22 H -0.212 1.212 23 H -0.200 1.200 24 H -0.201 1.201 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.125 0.875 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.159 0.841 39 H 0.049 0.951 40 H 0.096 0.904 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.019 0.981 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.941 -17.765 -9.038 22.273 hybrid contribution -0.492 0.245 -0.305 0.629 sum 9.450 -17.519 -9.343 21.989 Atomic orbital electron populations 1.23895 0.96045 1.01930 1.01283 1.22903 0.95884 0.98320 0.99809 1.20895 0.98225 0.95661 0.98529 1.21281 0.95649 0.94512 0.98855 0.89966 1.21580 0.96446 0.98410 0.98393 1.21546 0.98313 0.97111 0.98787 1.21548 0.97885 0.94837 1.01426 1.21535 0.95863 0.98289 0.98903 1.21517 0.92743 0.90327 0.96857 0.94483 1.60382 1.05478 1.01507 1.63391 1.22013 0.98845 0.89233 0.96250 1.22231 0.96331 0.96074 0.86668 1.87962 1.60350 1.62532 1.19016 1.20172 0.85433 0.85910 0.96559 1.21034 1.20606 1.22257 0.90953 0.91568 1.24943 0.95395 0.95358 0.98845 1.69962 1.23823 1.25289 1.35003 0.86403 0.77785 0.77855 0.84478 1.21236 1.20012 1.20052 0.88712 0.88394 0.87517 0.91166 0.91315 0.92226 0.91867 0.92369 0.91826 0.92458 0.92036 0.91922 0.90980 0.84054 0.95093 0.90446 0.94951 0.94311 0.97954 0.98052 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 14.32 29.02 0.42 -1.41 16 2 C -0.15 -1.40 9.02 -36.03 -0.33 -1.72 16 3 C -0.10 -0.93 5.00 -27.89 -0.14 -1.07 16 4 C -0.08 -0.88 1.84 -90.62 -0.17 -1.04 16 5 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 6 C -0.11 -0.96 5.02 -26.73 -0.13 -1.10 16 7 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 8 C -0.12 -1.16 5.92 -26.73 -0.16 -1.31 16 9 C -0.11 -1.33 5.43 -26.70 -0.14 -1.47 16 10 C 0.10 1.15 1.97 -67.69 -0.13 1.02 16 11 H 0.04 0.43 7.80 -51.93 -0.40 0.03 16 12 N -0.67 -10.09 6.26 -106.70 -0.67 -10.76 16 13 C 0.07 1.01 5.87 -3.82 -0.02 0.99 16 14 C 0.07 1.24 6.22 37.16 0.23 1.47 16 15 O -0.38 -9.48 10.27 -35.23 -0.36 -9.84 16 16 C 0.19 5.48 5.69 36.00 0.20 5.69 16 17 C -0.51 -15.46 9.43 -34.44 -0.32 -15.79 16 18 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 21 Si 0.91 22.34 29.54 -169.99 -5.02 17.32 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H 0.09 0.77 8.06 -52.49 -0.42 0.35 16 26 H 0.10 0.95 7.84 -52.49 -0.41 0.54 16 27 H 0.11 0.87 6.96 -52.49 -0.37 0.50 16 28 H 0.07 0.75 5.69 -51.93 -0.30 0.45 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 6.73 -51.93 -0.35 0.15 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.83 7.46 -51.93 -0.39 0.45 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.34 4.84 6.10 -39.29 -0.24 4.60 16 39 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 40 H 0.08 1.24 7.44 -51.93 -0.39 0.85 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 44 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -31.58 353.74 -9.24 -40.82 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.30 Total: -0.65 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -0.95 Total: -15.45 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.07 Total: -37.53 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.36 Total: -9.84 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.58 -9.24 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595603875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.937 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds