Wall clock time and date at job start Mon Mar 30 2020 09:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99901 * 2 1 4 4 C 1.52994 * 109.47296 * 125.00452 * 3 2 1 5 5 H 1.08997 * 109.47147 * 305.00465 * 4 3 2 6 6 C 1.53005 * 109.46955 * 64.99977 * 4 3 2 7 7 C 1.53002 * 109.47136 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47112 * 300.00320 * 7 6 4 9 9 C 1.52998 * 109.47391 * 59.99542 * 8 7 6 10 10 C 1.53001 * 109.47198 * 184.99938 * 4 3 2 11 11 H 1.09002 * 109.47163 * 299.99671 * 10 4 3 12 12 N 1.46898 * 109.47291 * 60.00283 * 10 4 3 13 13 C 1.46899 * 111.00062 * 205.00023 * 12 10 4 14 14 C 1.53000 * 109.47282 * 179.97438 * 13 12 10 15 15 O 1.42907 * 109.46664 * 64.99931 * 14 13 12 16 16 C 1.42900 * 113.99743 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47176 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00179 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00472 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47339 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00306 * 21 19 17 24 24 H 1.48504 * 109.46636 * 59.99865 * 21 19 17 25 25 H 1.08001 * 119.99801 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.99948 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00043 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47299 * 5.00224 * 3 2 1 29 29 H 1.09005 * 109.47047 * 245.00617 * 3 2 1 30 30 H 1.08994 * 109.47257 * 60.00470 * 6 4 3 31 31 H 1.09002 * 109.47332 * 299.99884 * 6 4 3 32 32 H 1.08992 * 109.47244 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.46812 * 59.99735 * 7 6 4 34 34 H 1.09005 * 109.46874 * 299.99944 * 8 7 6 35 35 H 1.08994 * 109.47145 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.46981 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.46783 * 60.00346 * 9 8 7 38 38 H 1.00905 * 110.99122 * 328.95188 * 12 10 4 39 39 H 1.08999 * 109.47291 * 59.99811 * 13 12 10 40 40 H 1.09002 * 109.47004 * 299.99856 * 13 12 10 41 41 H 1.09001 * 109.47162 * 305.00450 * 14 13 12 42 42 H 1.09000 * 109.47452 * 184.99804 * 14 13 12 43 43 H 1.09005 * 109.47045 * 60.00483 * 16 15 14 44 44 H 1.08998 * 109.47421 * 300.00108 * 16 15 14 45 45 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1815 5 1 2.4884 1.1468 2.1059 6 6 4.0999 0.2509 0.9918 7 6 5.0712 0.2785 2.1737 8 6 5.7453 1.6500 2.2480 9 6 4.6805 2.7321 2.4376 10 6 3.7092 2.7046 1.2551 11 1 4.2559 2.8908 0.3307 12 7 2.6868 3.7436 1.4372 13 6 3.1597 5.0411 0.9363 14 6 2.0701 6.0952 1.1422 15 8 1.8513 6.2870 2.5414 16 6 0.8473 7.2575 2.8449 17 6 0.7002 7.3774 4.3399 18 1 1.3120 6.7726 4.9929 19 6 -0.2161 8.2583 4.8741 20 7 -0.9614 8.9944 4.0789 21 14 -0.3989 8.4065 6.7272 22 1 -1.4422 9.4150 7.0426 23 1 -0.7941 7.0914 7.2923 24 1 0.8948 8.8312 7.3198 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4027 -0.9315 30 1 4.6466 0.4372 0.0675 31 1 3.6197 -0.7262 0.9394 32 1 5.8295 -0.4927 2.0388 33 1 4.5242 0.0920 3.0979 34 1 6.2923 1.8365 1.3237 35 1 6.4369 1.6697 3.0902 36 1 5.1608 3.7092 2.4900 37 1 4.1336 2.5456 3.3618 38 1 1.8197 3.4792 0.9941 39 1 3.3890 4.9588 -0.1261 40 1 4.0576 5.3351 1.4800 41 1 1.1457 5.7587 0.6727 42 1 2.3850 7.0363 0.6913 43 1 -0.1026 6.9456 2.4107 44 1 1.1373 8.2225 2.4294 45 1 -1.6063 9.6139 4.4547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595603875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:52 Heat of formation + Delta-G solvation = -75.948163 kcal Electronic energy + Delta-G solvation = -20672.050799 eV Core-core repulsion = 17687.886855 eV Total energy + Delta-G solvation = -2984.163945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.42731 -38.61477 -36.03999 -35.79845 -34.81309 -31.98695 -31.37959 -29.43821 -27.98116 -26.62153 -24.49364 -23.67562 -22.36385 -22.13289 -20.68296 -20.36188 -18.62569 -17.55035 -17.10928 -16.64171 -16.42257 -16.22687 -15.67845 -15.38483 -15.17454 -14.96470 -14.58209 -14.17877 -14.06061 -13.96129 -13.53112 -13.36357 -13.04656 -12.88167 -12.76390 -12.58926 -12.53792 -12.28938 -12.06071 -11.94344 -11.88149 -11.72640 -11.39724 -11.26998 -11.02079 -10.88725 -10.80224 -10.18983 -10.14187 -9.21304 -8.31549 -6.43606 1.39360 1.43639 1.44562 1.52938 2.35445 3.01994 3.14323 3.26682 3.69306 3.81292 3.91947 4.15684 4.21061 4.22959 4.29828 4.37122 4.42674 4.51476 4.54606 4.58587 4.63277 4.64417 4.66639 4.77737 4.82704 4.91671 4.99067 5.03566 5.08615 5.15633 5.18964 5.25041 5.33299 5.34297 5.37263 5.44130 5.55582 5.60396 5.78076 5.93175 5.97854 6.22379 6.51471 6.59055 6.86672 7.28625 8.80728 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.003785 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.599212 B = 7395.188096 C = 7813.258177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.093 4.093 4 C -0.077 4.077 5 H 0.060 0.940 6 C -0.106 4.106 7 C -0.119 4.119 8 C -0.113 4.113 9 C -0.108 4.108 10 C 0.098 3.902 11 H 0.050 0.950 12 N -0.698 5.698 13 C 0.076 3.924 14 C 0.055 3.945 15 O -0.396 6.396 16 C 0.209 3.791 17 C -0.548 4.548 18 H 0.059 0.941 19 C 0.007 3.993 20 N -0.931 5.931 21 Si 0.983 3.017 22 H -0.273 1.273 23 H -0.266 1.266 24 H -0.265 1.265 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.340 0.660 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.037 0.963 42 H 0.047 0.953 43 H -0.017 1.017 44 H -0.016 1.016 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.724 -19.339 -9.934 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.169 4.169 3 C -0.131 4.131 4 C -0.096 4.096 5 H 0.078 0.922 6 C -0.143 4.143 7 C -0.156 4.156 8 C -0.151 4.151 9 C -0.146 4.146 10 C -0.011 4.011 11 H 0.068 0.932 12 N -0.332 5.332 13 C -0.053 4.053 14 C -0.022 4.022 15 O -0.316 6.316 16 C 0.133 3.867 17 C -0.585 4.585 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.571 5.571 21 Si 0.805 3.195 22 H -0.198 1.198 23 H -0.191 1.191 24 H -0.190 1.190 25 H 0.126 0.874 26 H 0.106 0.894 27 H 0.141 0.859 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.162 0.838 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.000 1.000 44 H 0.002 0.998 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.854 -19.156 -9.160 23.847 hybrid contribution -0.767 0.679 -0.350 1.083 sum 10.087 -18.477 -9.510 23.100 Atomic orbital electron populations 1.24010 0.96394 1.02166 1.01662 1.23020 0.95867 0.98637 0.99416 1.20861 0.97937 0.95602 0.98660 1.21194 0.96107 0.94161 0.98157 0.92181 1.21568 0.95867 0.98150 0.98757 1.21548 0.98686 0.96926 0.98484 1.21511 0.97082 0.94368 1.02171 1.21527 0.96470 0.98603 0.98038 1.21560 0.92127 0.90380 0.97046 0.93211 1.60352 1.06563 1.02148 1.64154 1.21898 0.96796 0.88411 0.98162 1.22599 0.98043 0.97938 0.83650 1.87918 1.59202 1.61479 1.22953 1.19793 0.85310 0.85737 0.95817 1.21351 1.21786 1.23439 0.91934 0.92309 1.25952 0.94329 0.94264 1.04575 1.70066 1.24014 1.25460 1.37524 0.85245 0.78397 0.78410 0.77426 1.19773 1.19131 1.19006 0.87421 0.89397 0.85855 0.92554 0.90114 0.91053 0.90622 0.90451 0.92802 0.91276 0.91680 0.93458 0.93445 0.83830 0.91626 0.91229 0.94435 0.93465 0.99967 0.99848 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.69 14.32 67.78 0.97 -2.72 16 2 C -0.15 -2.57 9.02 25.65 0.23 -2.34 16 3 C -0.09 -1.70 5.00 29.85 0.15 -1.55 16 4 C -0.08 -1.53 1.84 -10.79 -0.02 -1.55 16 5 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 6 C -0.11 -1.58 5.02 30.60 0.15 -1.42 16 7 C -0.12 -1.85 5.92 30.60 0.18 -1.67 16 8 C -0.11 -2.03 5.92 30.59 0.18 -1.85 16 9 C -0.11 -2.66 5.43 30.61 0.17 -2.49 16 10 C 0.10 2.28 1.97 44.93 0.09 2.37 16 11 H 0.05 1.05 7.80 -2.39 -0.02 1.04 16 12 N -0.70 -20.91 6.26 -491.48 -3.08 -23.99 16 13 C 0.08 2.31 5.87 86.30 0.51 2.82 16 14 C 0.06 2.12 6.22 71.98 0.45 2.57 16 15 O -0.40 -20.40 10.27 -148.98 -1.53 -21.93 16 16 C 0.21 12.25 5.69 71.23 0.41 12.65 16 17 C -0.55 -33.96 9.43 25.60 0.24 -33.72 16 18 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 19 C 0.01 0.42 5.46 84.66 0.46 0.89 16 20 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 21 Si 0.98 45.66 29.54 68.60 2.03 47.68 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H 0.11 1.62 8.06 -2.91 -0.02 1.59 16 26 H 0.09 1.73 7.84 -2.91 -0.02 1.70 16 27 H 0.12 1.68 6.96 -2.91 -0.02 1.66 16 28 H 0.06 1.18 5.69 -2.39 -0.01 1.17 16 29 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.97 6.73 -2.39 -0.02 0.96 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.09 8.14 -2.38 -0.02 1.08 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 1.28 7.46 -2.39 -0.02 1.26 16 37 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.34 9.80 6.10 -89.69 -0.55 9.25 16 39 H 0.07 1.56 8.06 -2.39 -0.02 1.54 16 40 H 0.07 2.22 7.44 -2.39 -0.02 2.20 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 43 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 44 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 45 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -68.62 353.74 2.25 -66.37 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.38 Total: 16.93 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 4.17 Total: -28.02 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.79 Total: -81.03 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -1.53 Total: -21.93 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -68.62 2.25 -66.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595603875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.578 kcal (2) G-P(sol) polarization free energy of solvation -68.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds