Wall clock time and date at job start Mon Mar 30 2020 09:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99826 * 2 1 4 4 C 1.52997 * 109.47191 * 124.99808 * 3 2 1 5 5 H 1.09002 * 109.47497 * 54.99704 * 4 3 2 6 6 C 1.52997 * 109.47232 * 294.99929 * 4 3 2 7 7 C 1.53005 * 109.47452 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47159 * 59.99536 * 7 6 4 9 9 C 1.52997 * 109.47317 * 300.00546 * 8 7 6 10 10 C 1.53000 * 109.47060 * 59.99960 * 9 8 7 11 11 H 1.09004 * 109.46724 * 180.02562 * 10 9 8 12 12 N 1.46896 * 109.47261 * 59.99962 * 10 9 8 13 13 C 1.46902 * 110.99921 * 85.00186 * 12 10 9 14 14 C 1.53001 * 109.46911 * 179.97438 * 13 12 10 15 15 O 1.42907 * 109.46958 * 64.99720 * 14 13 12 16 16 C 1.42905 * 113.99741 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.46904 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99772 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99726 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00398 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99754 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47236 * 59.99933 * 21 19 17 23 23 H 1.48505 * 109.47052 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47450 * 299.99931 * 21 19 17 25 25 H 1.08005 * 120.00113 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99917 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99917 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47355 * 4.99995 * 3 2 1 29 29 H 1.09001 * 109.47069 * 244.99786 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 6 4 3 31 31 H 1.09001 * 109.47289 * 60.00075 * 6 4 3 32 32 H 1.09000 * 109.47360 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46935 * 300.00125 * 7 6 4 34 34 H 1.08996 * 109.46929 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.46716 * 60.00455 * 8 7 6 36 36 H 1.09002 * 109.47153 * 299.99641 * 9 8 7 37 37 H 1.09001 * 109.46832 * 179.97438 * 9 8 7 38 38 H 1.00899 * 111.00327 * 321.04527 * 12 10 9 39 39 H 1.08995 * 109.46956 * 299.99627 * 13 12 10 40 40 H 1.08994 * 109.47343 * 59.99699 * 13 12 10 41 41 H 1.08999 * 109.47040 * 184.99499 * 14 13 12 42 42 H 1.08996 * 109.47628 * 305.00033 * 14 13 12 43 43 H 1.08993 * 109.47645 * 300.00647 * 16 15 14 44 44 H 1.09005 * 109.46554 * 60.00705 * 16 15 14 45 45 H 0.97000 * 120.00038 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 1 3.6826 0.4574 1.1405 6 6 2.2449 1.3219 2.4918 7 6 3.2164 1.3493 3.6735 8 6 4.0695 2.6175 3.6032 9 6 4.8595 2.6287 2.2930 10 6 3.8879 2.6014 1.1114 11 1 4.4508 2.6089 0.1780 12 7 3.0156 3.7820 1.1673 13 6 3.6568 4.9409 0.5319 14 6 2.7199 6.1480 0.6090 15 8 2.5347 6.5207 1.9762 16 6 1.6717 7.6447 2.1604 17 6 1.5494 7.9482 3.6315 18 1 2.0775 7.3430 4.3534 19 6 0.7625 8.9978 4.0557 20 7 0.1182 9.7339 3.1766 21 14 0.6103 9.3736 5.8791 22 1 1.9522 9.6840 6.4343 23 1 -0.2864 10.5417 6.0707 24 1 0.0446 8.1942 6.5821 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.5972 2.1977 2.5331 31 1 1.6376 0.4182 2.5422 32 1 2.6536 1.3409 4.6069 33 1 3.8637 0.4733 3.6321 34 1 4.7612 2.6372 4.4453 35 1 3.4221 3.4935 3.6446 36 1 5.5068 1.7527 2.2515 37 1 5.4668 3.5324 2.2427 38 1 2.7509 3.9914 2.1181 39 1 4.5883 5.1698 1.0495 40 1 3.8684 4.7118 -0.5125 41 1 3.1568 6.9827 0.0609 42 1 1.7567 5.8891 0.1695 43 1 2.0872 8.5102 1.6445 44 1 0.6867 7.4170 1.7529 45 1 -0.4351 10.4726 3.4750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595603876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:57 Heat of formation + Delta-G solvation = -59.808439 kcal Electronic energy + Delta-G solvation = -21077.925815 eV Core-core repulsion = 18094.461741 eV Total energy + Delta-G solvation = -2983.464074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.60202 -36.85382 -35.11711 -34.02111 -32.63610 -30.96468 -30.17335 -27.79373 -26.52002 -25.51347 -22.39917 -22.36693 -21.79002 -21.11094 -19.65270 -18.77343 -16.50005 -16.01111 -15.63855 -15.22072 -15.18502 -14.83155 -14.33062 -14.29330 -14.05656 -13.48594 -13.22898 -13.06860 -12.91355 -12.28469 -12.06395 -11.99245 -11.83054 -11.59881 -11.47967 -11.15302 -10.99473 -10.82695 -10.75756 -10.70979 -10.56438 -10.31777 -10.15347 -10.02856 -9.86329 -9.22181 -9.10787 -8.80636 -8.15481 -8.05566 -6.09915 -4.11776 2.30874 3.32253 3.35121 3.38715 4.35455 4.42527 4.68102 4.81083 4.85955 4.98320 5.03322 5.17145 5.26489 5.27317 5.41085 5.46731 5.53018 5.54911 5.56311 5.64254 5.74880 5.75080 5.87248 5.90577 6.00351 6.02156 6.10902 6.17943 6.22921 6.27241 6.28199 6.36991 6.40161 6.45405 6.59168 6.69233 6.84783 7.12989 7.34778 7.45559 7.77072 7.79666 8.16587 8.59484 9.01099 9.53050 11.01543 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.004177 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.605579 B = 6701.113380 C = 6831.877619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.083 4.083 4 C -0.065 4.065 5 H 0.064 0.936 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.124 4.124 9 C -0.148 4.148 10 C 0.090 3.910 11 H 0.071 0.929 12 N -0.679 5.679 13 C 0.065 3.935 14 C 0.062 3.938 15 O -0.399 6.399 16 C 0.198 3.802 17 C -0.515 4.515 18 H 0.065 0.935 19 C 0.057 3.943 20 N -0.898 5.898 21 Si 0.907 3.093 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.356 0.644 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.045 0.955 43 H 0.003 0.997 44 H 0.005 0.995 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.526 -18.313 -5.292 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.167 4.167 3 C -0.120 4.120 4 C -0.084 4.084 5 H 0.082 0.918 6 C -0.152 4.152 7 C -0.155 4.155 8 C -0.162 4.162 9 C -0.187 4.187 10 C -0.020 4.020 11 H 0.090 0.910 12 N -0.313 5.313 13 C -0.064 4.064 14 C -0.016 4.016 15 O -0.319 6.319 16 C 0.124 3.876 17 C -0.553 4.553 18 H 0.083 0.917 19 C -0.144 4.144 20 N -0.537 5.537 21 Si 0.734 3.266 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.179 0.821 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.023 0.977 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.117 -18.396 -5.707 20.209 hybrid contribution 0.421 0.691 1.319 1.547 sum 6.538 -17.705 -4.388 19.376 Atomic orbital electron populations 1.23838 0.96101 1.01593 1.02230 1.23034 0.96051 0.98638 0.98946 1.20718 0.98585 0.95155 0.97531 1.21039 0.96200 0.96313 0.94834 0.91793 1.21575 0.97807 1.02354 0.93428 1.21527 0.97935 0.97538 0.98517 1.21546 0.98935 0.98723 0.96996 1.22169 0.98635 1.01758 0.96131 1.21564 0.92117 0.91323 0.97029 0.91041 1.60659 1.41279 1.03519 1.25860 1.21965 0.95796 0.89997 0.98664 1.22299 0.98143 0.94609 0.86537 1.87785 1.69883 1.52062 1.22171 1.20157 0.87906 0.82339 0.97239 1.21006 1.28655 1.14175 0.91465 0.91722 1.24935 0.95274 0.95709 0.98497 1.69954 1.30584 1.19338 1.33872 0.86416 0.78073 0.77794 0.84304 1.20076 1.21153 1.20003 0.89158 0.88434 0.88201 0.89799 0.91782 0.90855 0.92356 0.92187 0.92640 0.92219 0.91021 0.92026 0.92066 0.82076 0.94935 0.90920 0.94364 0.93649 0.97908 0.97670 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 14.32 29.01 0.42 -1.60 16 2 C -0.15 -1.49 8.50 -36.03 -0.31 -1.79 16 3 C -0.08 -0.90 4.90 -27.89 -0.14 -1.03 16 4 C -0.06 -0.69 2.00 -90.62 -0.18 -0.87 16 5 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 6 C -0.11 -1.30 4.78 -26.73 -0.13 -1.43 16 7 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 8 C -0.12 -1.51 5.67 -26.73 -0.15 -1.66 16 9 C -0.15 -1.69 5.52 -26.73 -0.15 -1.83 16 10 C 0.09 1.05 2.30 -67.71 -0.16 0.89 16 11 H 0.07 0.79 7.80 -51.93 -0.41 0.39 16 12 N -0.68 -9.69 5.10 -106.73 -0.54 -10.23 16 13 C 0.07 0.97 5.90 -3.82 -0.02 0.95 16 14 C 0.06 1.16 6.28 37.16 0.23 1.39 16 15 O -0.40 -9.48 9.85 -35.23 -0.35 -9.83 16 16 C 0.20 5.45 5.69 36.01 0.20 5.65 16 17 C -0.51 -15.14 9.43 -34.44 -0.32 -15.47 16 18 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 21 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 25 H 0.09 0.79 8.06 -52.48 -0.42 0.36 16 26 H 0.10 1.03 7.84 -52.48 -0.41 0.62 16 27 H 0.10 0.89 8.06 -52.48 -0.42 0.46 16 28 H 0.08 1.07 7.42 -51.93 -0.39 0.69 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.99 7.21 -51.93 -0.37 0.61 16 31 H 0.06 0.64 7.38 -51.93 -0.38 0.26 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.04 6.26 -51.93 -0.32 0.71 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.75 7.45 -51.93 -0.39 0.37 16 38 H 0.36 5.83 5.12 -39.29 -0.20 5.63 16 39 H 0.03 0.50 7.43 -51.93 -0.39 0.11 16 40 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -29.62 351.39 -9.13 -38.75 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.30 Total: 2.13 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -0.96 Total: -16.71 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.19 Total: -36.49 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.35 Total: -9.83 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.62 -9.13 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595603876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.054 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds