Wall clock time and date at job start Mon Mar 30 2020 09:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99826 * 2 1 4 4 C 1.52997 * 109.47191 * 124.99808 * 3 2 1 5 5 H 1.09002 * 109.47497 * 54.99704 * 4 3 2 6 6 C 1.52997 * 109.47232 * 294.99929 * 4 3 2 7 7 C 1.53005 * 109.47452 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47159 * 59.99536 * 7 6 4 9 9 C 1.52997 * 109.47317 * 300.00546 * 8 7 6 10 10 C 1.53000 * 109.47060 * 59.99960 * 9 8 7 11 11 H 1.09004 * 109.46724 * 180.02562 * 10 9 8 12 12 N 1.46896 * 109.47261 * 59.99962 * 10 9 8 13 13 C 1.46902 * 110.99921 * 85.00186 * 12 10 9 14 14 C 1.53001 * 109.46911 * 179.97438 * 13 12 10 15 15 O 1.42907 * 109.46958 * 64.99720 * 14 13 12 16 16 C 1.42905 * 113.99741 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.46904 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99772 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99726 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00398 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99754 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47236 * 59.99933 * 21 19 17 23 23 H 1.48505 * 109.47052 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47450 * 299.99931 * 21 19 17 25 25 H 1.08005 * 120.00113 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99917 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99917 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47355 * 4.99995 * 3 2 1 29 29 H 1.09001 * 109.47069 * 244.99786 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99992 * 6 4 3 31 31 H 1.09001 * 109.47289 * 60.00075 * 6 4 3 32 32 H 1.09000 * 109.47360 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46935 * 300.00125 * 7 6 4 34 34 H 1.08996 * 109.46929 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.46716 * 60.00455 * 8 7 6 36 36 H 1.09002 * 109.47153 * 299.99641 * 9 8 7 37 37 H 1.09001 * 109.46832 * 179.97438 * 9 8 7 38 38 H 1.00899 * 111.00327 * 321.04527 * 12 10 9 39 39 H 1.08995 * 109.46956 * 299.99627 * 13 12 10 40 40 H 1.08994 * 109.47343 * 59.99699 * 13 12 10 41 41 H 1.08999 * 109.47040 * 184.99499 * 14 13 12 42 42 H 1.08996 * 109.47628 * 305.00033 * 14 13 12 43 43 H 1.08993 * 109.47645 * 300.00647 * 16 15 14 44 44 H 1.09005 * 109.46554 * 60.00705 * 16 15 14 45 45 H 0.97000 * 120.00038 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 1 3.6826 0.4574 1.1405 6 6 2.2449 1.3219 2.4918 7 6 3.2164 1.3493 3.6735 8 6 4.0695 2.6175 3.6032 9 6 4.8595 2.6287 2.2930 10 6 3.8879 2.6014 1.1114 11 1 4.4508 2.6089 0.1780 12 7 3.0156 3.7820 1.1673 13 6 3.6568 4.9409 0.5319 14 6 2.7199 6.1480 0.6090 15 8 2.5347 6.5207 1.9762 16 6 1.6717 7.6447 2.1604 17 6 1.5494 7.9482 3.6315 18 1 2.0775 7.3430 4.3534 19 6 0.7625 8.9978 4.0557 20 7 0.1182 9.7339 3.1766 21 14 0.6103 9.3736 5.8791 22 1 1.9522 9.6840 6.4343 23 1 -0.2864 10.5417 6.0707 24 1 0.0446 8.1942 6.5821 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.5972 2.1977 2.5331 31 1 1.6376 0.4182 2.5422 32 1 2.6536 1.3409 4.6069 33 1 3.8637 0.4733 3.6321 34 1 4.7612 2.6372 4.4453 35 1 3.4221 3.4935 3.6446 36 1 5.5068 1.7527 2.2515 37 1 5.4668 3.5324 2.2427 38 1 2.7509 3.9914 2.1181 39 1 4.5883 5.1698 1.0495 40 1 3.8684 4.7118 -0.5125 41 1 3.1568 6.9827 0.0609 42 1 1.7567 5.8891 0.1695 43 1 2.0872 8.5102 1.6445 44 1 0.6867 7.4170 1.7529 45 1 -0.4351 10.4726 3.4750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595603876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:18:57 Heat of formation + Delta-G solvation = -76.531533 kcal Electronic energy + Delta-G solvation = -21078.650983 eV Core-core repulsion = 18094.461741 eV Total energy + Delta-G solvation = -2984.189241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.57557 -38.63058 -36.08431 -35.30331 -34.67760 -31.87605 -31.34079 -29.52871 -28.10838 -26.50054 -24.53158 -23.36256 -22.99791 -22.19555 -20.46572 -19.72456 -18.65342 -17.51177 -17.09168 -16.67114 -16.40132 -16.14635 -15.70004 -15.44732 -15.30603 -14.90618 -14.43008 -14.12431 -13.97560 -13.87129 -13.31806 -13.24391 -13.00213 -12.82391 -12.77920 -12.73145 -12.56797 -12.29265 -12.25849 -11.87276 -11.82071 -11.60467 -11.30985 -11.24266 -11.05351 -10.88780 -10.82158 -10.23247 -10.02733 -9.17136 -8.32549 -6.45179 1.38911 1.43628 1.52018 1.52293 2.33801 3.01282 3.22407 3.32203 3.78208 3.89176 3.92078 4.16628 4.25289 4.29331 4.37318 4.43534 4.51623 4.56186 4.61244 4.64589 4.66196 4.72266 4.80219 4.81082 4.90594 4.95572 4.98810 5.08933 5.13523 5.15603 5.18560 5.24329 5.33839 5.37069 5.45857 5.52274 5.53845 5.67598 5.87231 5.95137 6.05934 6.26319 6.51294 6.53688 6.81096 7.26789 8.79635 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.004177 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.605579 B = 6701.113380 C = 6831.877619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.080 4.080 4 C -0.058 4.058 5 H 0.086 0.914 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.125 4.125 9 C -0.143 4.143 10 C 0.090 3.910 11 H 0.085 0.915 12 N -0.686 5.686 13 C 0.076 3.924 14 C 0.054 3.946 15 O -0.408 6.408 16 C 0.212 3.788 17 C -0.548 4.548 18 H 0.062 0.938 19 C 0.007 3.993 20 N -0.931 5.931 21 Si 0.982 3.018 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.266 1.266 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.342 0.658 39 H 0.030 0.970 40 H 0.103 0.897 41 H 0.045 0.955 42 H 0.041 0.959 43 H -0.016 1.016 44 H -0.017 1.017 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 -20.022 -4.802 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.166 4.166 3 C -0.117 4.117 4 C -0.077 4.077 5 H 0.104 0.896 6 C -0.148 4.148 7 C -0.150 4.150 8 C -0.162 4.162 9 C -0.182 4.182 10 C -0.020 4.020 11 H 0.103 0.897 12 N -0.319 5.319 13 C -0.054 4.054 14 C -0.023 4.023 15 O -0.328 6.328 16 C 0.137 3.863 17 C -0.585 4.585 18 H 0.080 0.920 19 C -0.191 4.191 20 N -0.570 5.570 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.190 1.190 25 H 0.123 0.877 26 H 0.102 0.898 27 H 0.137 0.863 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.163 0.837 39 H 0.048 0.952 40 H 0.121 0.879 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.002 0.998 44 H 0.001 0.999 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.239 -20.124 -5.245 22.021 hybrid contribution 0.071 1.202 1.078 1.616 sum 7.310 -18.923 -4.166 20.709 Atomic orbital electron populations 1.23927 0.96432 1.01717 1.02540 1.23119 0.95991 0.98847 0.98618 1.20650 0.98226 0.94848 0.97962 1.21016 0.96117 0.96483 0.94096 0.89599 1.21518 0.97733 1.01265 0.94305 1.21498 0.97853 0.97569 0.98122 1.21527 0.98780 0.98068 0.97864 1.22125 0.98473 1.02236 0.95328 1.21679 0.92051 0.90468 0.97800 0.89667 1.60700 1.42228 1.04096 1.24860 1.21916 0.94318 0.88689 1.00445 1.22617 0.99071 0.96584 0.84024 1.87757 1.68880 1.50590 1.25530 1.19770 0.87242 0.82814 0.96448 1.21340 1.29765 1.15158 0.92259 0.92024 1.25950 0.94219 0.94973 1.03980 1.70068 1.30812 1.19693 1.36417 0.85254 0.78635 0.78052 0.77597 1.18989 1.19962 1.19031 0.87668 0.89831 0.86265 0.92428 0.91067 0.93754 0.91717 0.92543 0.90601 0.91736 0.94186 0.89754 0.93180 0.83674 0.95180 0.87923 0.93681 0.94112 0.99849 0.99933 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.01 14.32 67.78 0.97 -3.04 16 2 C -0.15 -2.69 8.50 25.65 0.22 -2.47 16 3 C -0.08 -1.62 4.90 29.85 0.15 -1.47 16 4 C -0.06 -1.13 2.00 -10.79 -0.02 -1.15 16 5 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 6 C -0.11 -2.43 4.78 30.60 0.15 -2.28 16 7 C -0.11 -2.33 5.92 30.60 0.18 -2.15 16 8 C -0.12 -2.95 5.67 30.59 0.17 -2.78 16 9 C -0.14 -3.01 5.52 30.59 0.17 -2.84 16 10 C 0.09 1.94 2.30 44.92 0.10 2.04 16 11 H 0.09 1.64 7.80 -2.39 -0.02 1.62 16 12 N -0.69 -19.55 5.10 -491.58 -2.51 -22.05 16 13 C 0.08 2.21 5.90 86.30 0.51 2.72 16 14 C 0.05 2.07 6.28 71.98 0.45 2.52 16 15 O -0.41 -20.09 9.85 -148.98 -1.47 -21.56 16 16 C 0.21 12.20 5.69 71.24 0.41 12.60 16 17 C -0.55 -33.03 9.43 25.60 0.24 -32.79 16 18 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 19 C 0.01 0.43 5.46 84.65 0.46 0.89 16 20 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 21 Si 0.98 44.77 29.54 68.60 2.03 46.80 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H 0.11 1.67 8.06 -2.91 -0.02 1.65 16 26 H 0.08 1.81 7.84 -2.91 -0.02 1.79 16 27 H 0.12 1.74 8.06 -2.91 -0.02 1.71 16 28 H 0.06 1.48 7.42 -2.39 -0.02 1.46 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 1.23 7.21 -2.39 -0.02 1.21 16 31 H 0.06 1.33 7.38 -2.39 -0.02 1.31 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.04 1.20 6.26 -2.39 -0.01 1.19 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.17 7.45 -2.39 -0.02 1.15 16 38 H 0.34 11.61 5.12 -89.69 -0.46 11.15 16 39 H 0.03 0.90 7.43 -2.39 -0.02 0.88 16 40 H 0.10 2.41 8.06 -2.39 -0.02 2.39 16 41 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 44 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 45 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -64.73 351.39 2.96 -61.77 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.46 Total: 21.65 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 4.16 Total: -30.20 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -2.22 Total: -78.47 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.47 Total: -21.56 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.73 2.96 -61.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595603876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.758 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds