Wall clock time and date at job start Mon Mar 30 2020 09:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00179 * 2 1 4 4 C 1.52997 * 109.47348 * 124.99416 * 3 2 1 5 5 H 1.08993 * 109.47194 * 304.99609 * 4 3 2 6 6 C 1.52999 * 109.46991 * 65.00452 * 4 3 2 7 7 C 1.52997 * 109.46991 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47131 * 299.99311 * 7 6 4 9 9 C 1.53002 * 109.46972 * 60.00459 * 8 7 6 10 10 C 1.52997 * 109.46817 * 299.99733 * 9 8 7 11 11 H 1.09001 * 109.47289 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47254 * 300.00227 * 10 9 8 13 13 C 1.46902 * 110.99869 * 274.99746 * 12 10 9 14 14 C 1.52998 * 109.47056 * 179.97438 * 13 12 10 15 15 O 1.42898 * 109.47136 * 65.00234 * 14 13 12 16 16 C 1.42901 * 114.00210 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47129 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99857 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99931 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99660 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99994 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47318 * 59.99859 * 21 19 17 23 23 H 1.48502 * 109.47326 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47325 * 299.99855 * 21 19 17 25 25 H 1.08002 * 120.00129 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00044 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00129 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46894 * 4.99328 * 3 2 1 29 29 H 1.09001 * 109.46755 * 244.99952 * 3 2 1 30 30 H 1.09002 * 109.46719 * 299.99711 * 6 4 3 31 31 H 1.08993 * 109.47839 * 59.99553 * 6 4 3 32 32 H 1.09001 * 109.47289 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47611 * 59.99933 * 7 6 4 34 34 H 1.08996 * 109.47452 * 300.00000 * 8 7 6 35 35 H 1.09000 * 109.47054 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47070 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47407 * 59.99513 * 9 8 7 38 38 H 1.00896 * 111.00381 * 38.95478 * 12 10 9 39 39 H 1.08993 * 109.47122 * 300.00280 * 13 12 10 40 40 H 1.09003 * 109.47035 * 60.00136 * 13 12 10 41 41 H 1.08998 * 109.47090 * 184.99810 * 14 13 12 42 42 H 1.08998 * 109.47451 * 305.00594 * 14 13 12 43 43 H 1.09002 * 109.46772 * 300.00142 * 16 15 14 44 44 H 1.08999 * 109.46857 * 59.99890 * 16 15 14 45 45 H 0.97004 * 119.99821 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 1 2.4881 1.1471 2.1060 6 6 4.0998 0.2510 0.9922 7 6 5.0709 0.2787 2.1742 8 6 5.7451 1.6501 2.2484 9 6 4.6802 2.7323 2.4378 10 6 3.7092 2.7046 1.2558 11 1 2.9508 3.4759 1.3905 12 7 4.4465 2.9558 0.0104 13 6 4.5987 4.3970 -0.2298 14 6 5.3703 4.6183 -1.5323 15 8 4.5983 4.1314 -2.6318 16 6 5.2316 4.2914 -3.9028 17 6 4.3339 3.7462 -4.9836 18 1 3.3754 3.3206 -4.7257 19 6 4.7358 3.7918 -6.3017 20 7 5.9027 4.3106 -6.6157 21 14 3.6228 3.1168 -7.6414 22 1 2.3344 3.8553 -7.6334 23 1 4.2809 3.2829 -8.9622 24 1 3.3683 1.6749 -7.3936 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0894 29 1 2.6213 1.4025 -0.9314 30 1 3.6195 -0.7261 0.9398 31 1 4.6466 0.4371 0.0679 32 1 5.8293 -0.4925 2.0395 33 1 4.5238 0.0922 3.0984 34 1 6.2922 1.8365 1.3243 35 1 6.4372 1.6696 3.0902 36 1 5.1606 3.7093 2.4911 37 1 4.1331 2.5459 3.3619 38 1 5.3437 2.4944 0.0219 39 1 3.6143 4.8584 -0.3073 40 1 5.1469 4.8473 0.5978 41 1 5.5606 5.6833 -1.6654 42 1 6.3184 4.0824 -1.4886 43 1 5.4187 5.3497 -4.0848 44 1 6.1771 3.7490 -3.9084 45 1 6.1857 4.3424 -7.5430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595603877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:19:02 Heat of formation + Delta-G solvation = -55.578514 kcal Electronic energy + Delta-G solvation = -21023.549927 eV Core-core repulsion = 18040.269276 eV Total energy + Delta-G solvation = -2983.280650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66136 -36.76682 -35.06353 -34.09580 -32.59057 -31.01535 -30.24654 -27.77354 -26.42924 -25.44511 -22.61902 -22.26537 -21.89670 -21.19485 -19.37515 -18.89355 -16.46755 -16.07788 -15.55400 -15.46221 -15.05766 -14.82115 -14.37793 -14.20475 -13.74987 -13.58548 -13.46800 -12.96641 -12.69683 -12.58031 -12.13898 -12.02161 -11.90502 -11.59830 -11.31267 -11.18147 -11.00731 -10.87764 -10.79271 -10.68880 -10.58614 -10.31979 -10.08883 -9.97626 -9.82738 -9.15573 -9.03632 -8.73960 -8.09009 -8.00825 -6.04875 -4.05624 2.43524 3.36745 3.38856 3.43415 4.35221 4.40920 4.61631 4.70467 4.77831 4.96551 5.04430 5.14738 5.23139 5.31646 5.38712 5.41175 5.45488 5.50866 5.56263 5.61041 5.68462 5.71498 5.82985 5.89749 5.95858 6.02736 6.07895 6.10158 6.14699 6.17539 6.22596 6.35900 6.36171 6.46587 6.61665 6.82018 6.97334 7.16946 7.32489 7.50186 7.67630 7.86982 8.23556 8.68824 9.09073 9.59050 11.06814 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016421 B = 0.004647 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.723851 B = 6023.656446 C = 7095.038020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.085 4.085 4 C -0.063 4.063 5 H 0.063 0.937 6 C -0.117 4.117 7 C -0.118 4.118 8 C -0.121 4.121 9 C -0.150 4.150 10 C 0.091 3.909 11 H 0.074 0.926 12 N -0.666 5.666 13 C 0.065 3.935 14 C 0.065 3.935 15 O -0.379 6.379 16 C 0.194 3.806 17 C -0.510 4.510 18 H 0.066 0.934 19 C 0.056 3.944 20 N -0.901 5.901 21 Si 0.907 3.093 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.339 0.661 39 H 0.076 0.924 40 H 0.031 0.969 41 H 0.038 0.962 42 H 0.032 0.968 43 H 0.001 0.999 44 H 0.002 0.998 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.114 -5.839 19.563 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.159 4.159 3 C -0.122 4.122 4 C -0.082 4.082 5 H 0.081 0.919 6 C -0.154 4.154 7 C -0.156 4.156 8 C -0.159 4.159 9 C -0.189 4.189 10 C -0.020 4.020 11 H 0.093 0.907 12 N -0.298 5.298 13 C -0.064 4.064 14 C -0.013 4.013 15 O -0.298 6.298 16 C 0.120 3.880 17 C -0.548 4.548 18 H 0.084 0.916 19 C -0.145 4.145 20 N -0.541 5.541 21 Si 0.734 3.266 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.160 0.840 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.019 0.981 44 H 0.020 0.980 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.731 -5.931 19.003 20.254 hybrid contribution 0.552 0.077 -0.142 0.575 sum -3.179 -5.854 18.861 20.003 Atomic orbital electron populations 1.23763 0.96109 1.01305 1.03620 1.23122 0.95877 0.99100 0.97799 1.20736 0.97424 0.93827 1.00248 1.21020 0.95300 0.94064 0.97832 0.91865 1.21619 0.96724 0.98398 0.98707 1.21532 0.98560 0.96633 0.98854 1.21526 0.97671 0.95080 1.01589 1.22211 0.98173 0.98693 0.99840 1.21589 0.95428 0.97320 0.87647 0.90734 1.60491 1.24843 1.10407 1.34108 1.21994 1.00770 0.88821 0.94846 1.22222 0.93903 0.96981 0.88176 1.87954 1.44289 1.82534 1.15041 1.20166 0.93392 0.95283 0.79187 1.21026 1.04101 1.39373 0.90281 0.91575 1.24936 0.95486 0.95536 0.98562 1.69959 1.19925 1.45479 1.18699 0.86419 0.80428 0.79603 0.80158 1.20055 1.21246 1.20013 0.88848 0.89182 0.87801 0.92128 0.88515 0.92234 0.90721 0.92271 0.92436 0.91855 0.92298 0.92284 0.91753 0.83978 0.90549 0.95108 0.94411 0.95000 0.98107 0.97984 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.39 14.32 29.02 0.42 -1.98 16 2 C -0.14 -1.69 9.02 -36.02 -0.33 -2.01 16 3 C -0.09 -1.11 4.90 -27.88 -0.14 -1.24 16 4 C -0.06 -0.70 2.00 -90.62 -0.18 -0.88 16 5 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 6 C -0.12 -1.26 4.78 -26.73 -0.13 -1.38 16 7 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 8 C -0.12 -1.14 5.67 -26.73 -0.15 -1.29 16 9 C -0.15 -1.45 5.52 -26.73 -0.15 -1.60 16 10 C 0.09 1.04 2.30 -67.71 -0.16 0.88 16 11 H 0.07 0.88 7.80 -51.93 -0.40 0.47 16 12 N -0.67 -9.33 5.05 -106.72 -0.54 -9.86 16 13 C 0.06 0.95 5.87 -3.82 -0.02 0.93 16 14 C 0.07 1.21 6.22 37.16 0.23 1.44 16 15 O -0.38 -9.24 10.27 -35.23 -0.36 -9.60 16 16 C 0.19 5.42 5.69 36.01 0.20 5.63 16 17 C -0.51 -15.28 9.43 -34.44 -0.32 -15.60 16 18 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 21 Si 0.91 22.25 29.54 -169.99 -5.02 17.23 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.09 1.04 7.84 -52.49 -0.41 0.63 16 26 H 0.09 0.90 8.06 -52.49 -0.42 0.47 16 27 H 0.10 1.16 6.96 -52.49 -0.37 0.79 16 28 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 29 H 0.10 1.55 7.77 -51.93 -0.40 1.15 16 30 H 0.06 0.61 6.73 -51.93 -0.35 0.26 16 31 H 0.07 0.94 7.21 -51.93 -0.37 0.56 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.65 6.26 -51.93 -0.32 0.32 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.57 7.46 -51.93 -0.39 0.19 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.34 4.65 5.56 -39.29 -0.22 4.44 16 39 H 0.08 1.17 8.05 -51.93 -0.42 0.76 16 40 H 0.03 0.38 7.44 -51.93 -0.39 0.00 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 44 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -30.75 350.88 -9.10 -39.85 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.22 Total: 0.56 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.98 Total: -16.83 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.20 Total: -36.49 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.36 Total: -9.60 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.75 -9.10 -39.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595603877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.731 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds